Wall clock time and date at job start Mon Mar 8 2021 11:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47215 * 2 1 4 4 H 1.48503 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47432 * 300.00169 * 3 2 1 6 6 H 1.48493 * 109.47251 * 60.00463 * 3 2 1 7 7 C 1.50697 * 109.47241 * 120.00429 * 2 1 3 8 8 C 1.33388 * 125.20637 * 38.87236 * 7 2 1 9 9 S 1.76202 * 122.53588 * 0.02615 * 8 7 2 10 10 O 1.42104 * 106.40318 * 50.99763 * 9 8 7 11 11 O 1.42105 * 106.40152 * 278.07424 * 9 8 7 12 12 N 1.65606 * 107.21826 * 164.53878 * 9 8 7 13 13 C 1.43957 * 122.79303 * 266.56817 * 12 9 8 14 14 C 1.55550 * 110.01729 * 291.08749 * 13 12 9 15 15 C 1.56829 * 111.25873 * 322.51966 * 14 13 12 16 16 Si 1.83029 * 113.74434 * 319.77670 * 15 14 13 17 17 C 1.87575 * 112.77245 * 208.10336 * 16 15 14 18 18 C 1.56449 * 98.93775 * 100.63427 * 17 16 15 19 19 C 1.53773 * 109.81640 * 39.20375 * 18 17 16 20 20 C 1.55737 * 111.40479 * 312.28439 * 19 18 17 21 21 C 1.88535 * 109.77137 * 84.97313 * 16 15 14 22 22 C 1.46411 * 104.59194 * 294.13932 * 21 16 15 23 23 C 1.38417 * 114.92132 * 179.75429 * 8 7 2 24 24 C 1.33390 * 114.92332 * 0.24845 * 23 8 7 25 25 S 1.75885 * 109.59248 * 359.97438 * 24 23 8 26 26 H 0.96707 * 113.99844 * 305.70097 * 1 2 3 27 27 H 1.09005 * 109.46743 * 240.00310 * 2 1 3 28 28 H 1.09006 * 109.38001 * 51.25169 * 13 12 9 29 29 H 1.08993 * 109.37866 * 171.03133 * 13 12 9 30 30 H 1.08996 * 109.12004 * 82.98580 * 14 13 12 31 31 H 1.09003 * 109.11925 * 202.12361 * 14 13 12 32 32 H 1.09004 * 108.63018 * 80.88274 * 15 14 13 33 33 H 1.08998 * 108.63205 * 198.81108 * 15 14 13 34 34 H 1.08995 * 111.49556 * 218.07165 * 17 16 15 35 35 H 1.08997 * 111.50031 * 343.20066 * 17 16 15 36 36 H 1.09000 * 109.41380 * 279.09311 * 18 17 16 37 37 H 1.09007 * 109.36317 * 159.27195 * 18 17 16 38 38 H 1.08998 * 109.10061 * 191.77303 * 19 18 17 39 39 H 1.08997 * 109.01337 * 72.73607 * 19 18 17 40 40 H 1.08998 * 111.15512 * 270.12146 * 20 19 18 41 41 H 1.09001 * 111.19205 * 145.90399 * 20 19 18 42 42 H 1.08998 * 110.40271 * 175.37375 * 21 16 15 43 43 H 1.08993 * 110.40514 * 52.90285 * 21 16 15 44 44 H 1.08995 * 108.75438 * 178.70671 * 22 21 16 45 45 H 1.09003 * 108.75075 * 296.95399 * 22 21 16 46 46 H 1.08004 * 122.54035 * 180.22281 * 23 8 7 47 47 H 1.07997 * 125.20194 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7563 -0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5551 2.4564 1.2125 7 6 1.9313 -0.7105 1.2304 8 6 1.3877 -1.8068 1.7611 9 16 -0.0314 -2.5905 1.0706 10 8 0.2465 -2.7793 -0.3102 11 8 -1.1594 -1.8678 1.5446 12 7 -0.1303 -4.1025 1.7388 13 6 0.4429 -5.2682 1.1183 14 6 -0.3413 -5.6214 -0.1778 15 6 -1.8784 -5.3666 0.0003 16 14 -2.5238 -5.8689 1.6377 17 6 -4.3339 -6.3581 1.5858 18 6 -4.1652 -7.9134 1.5743 19 6 -3.0185 -8.3203 2.5146 20 6 -1.7491 -7.4515 2.2721 21 6 -2.2655 -4.4746 2.8802 22 6 -0.8118 -4.3665 3.0163 23 6 2.0263 -2.2856 2.8920 24 6 3.0854 -1.5751 3.2827 25 16 3.3226 -0.2193 2.1878 26 1 -0.3933 0.5156 0.7174 27 1 1.7922 -0.5138 -0.8901 28 1 1.4849 -5.0691 0.8676 29 1 0.3916 -6.1085 1.8105 30 1 0.0299 -5.0072 -0.9982 31 1 -0.1798 -6.6724 -0.4175 32 1 -2.0737 -4.3034 -0.1397 33 1 -2.4150 -5.9224 -0.7686 34 1 -4.8646 -6.0203 2.4759 35 1 -4.8180 -6.0020 0.6765 36 1 -3.9383 -8.2457 0.5613 37 1 -5.0915 -8.3799 1.9096 38 1 -2.7717 -9.3681 2.3434 39 1 -3.3446 -8.1951 3.5471 40 1 -1.1019 -7.9019 1.5195 41 1 -1.2063 -7.2788 3.2014 42 1 -2.7189 -4.7302 3.8379 43 1 -2.6817 -3.5428 2.4976 44 1 -0.5840 -3.5564 3.7091 45 1 -0.4283 -5.2991 3.4301 46 1 1.6920 -3.1674 3.4185 47 1 3.7029 -1.7983 4.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607860_14772022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:04 Heat of formation + Delta-G solvation = -95.510613 kcal Electronic energy + Delta-G solvation = -30208.569095 eV Core-core repulsion = 26347.886832 eV Total energy + Delta-G solvation = -3860.682262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 375.095 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.69979 -38.93841 -38.22719 -37.73006 -36.73482 -36.11606 -33.73663 -31.87819 -30.93674 -29.71084 -27.59029 -26.82274 -24.86321 -24.46811 -23.47743 -22.38328 -21.69572 -20.93166 -19.65963 -18.97982 -18.55856 -17.86042 -17.28179 -17.18367 -16.63955 -16.07758 -15.88605 -15.81888 -15.67947 -15.56240 -15.31292 -15.08002 -14.70414 -14.61747 -14.21125 -14.16309 -13.94424 -13.92341 -13.60080 -13.18999 -13.09261 -12.98543 -12.79027 -12.72021 -12.59216 -12.53953 -12.35684 -12.25917 -12.22390 -12.10633 -12.05202 -11.71278 -11.62746 -11.44706 -11.27245 -11.09076 -10.46180 -10.27528 -10.19135 -10.15559 -9.97499 -9.79022 -0.72895 -0.54905 0.30142 0.58574 0.88417 1.14596 1.28851 1.36776 1.74023 1.75528 1.89433 2.01861 2.03471 2.68241 2.76078 3.09733 3.28470 3.53161 3.80973 4.05219 4.13601 4.15134 4.15221 4.18389 4.20462 4.33987 4.37794 4.46801 4.59232 4.62789 4.66121 4.70297 4.76106 4.81237 4.85513 4.86566 4.96312 5.08229 5.12178 5.14104 5.16389 5.19462 5.28545 5.39141 5.40695 5.43733 5.57002 5.58388 5.67683 5.75135 6.26117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.099 4.099 3 Si 0.943 3.057 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.232 1.232 7 C -0.122 4.122 8 C -0.675 4.675 9 S 2.726 3.274 10 O -0.971 6.971 11 O -0.973 6.973 12 N -0.993 5.993 13 C 0.099 3.901 14 C -0.138 4.138 15 C -0.432 4.432 16 Si 1.028 2.972 17 C -0.428 4.428 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.393 4.393 21 C -0.442 4.442 22 C 0.114 3.886 23 C -0.095 4.095 24 C -0.201 4.201 25 S 0.149 5.851 26 H 0.395 0.605 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.180 0.820 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -2.913 5.885 8.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.209 4.209 3 Si 0.758 3.242 4 H -0.139 1.139 5 H -0.152 1.152 6 H -0.154 1.154 7 C -0.243 4.243 8 C -0.775 4.775 9 S 2.815 3.185 10 O -0.961 6.961 11 O -0.964 6.964 12 N -0.832 5.832 13 C -0.026 4.026 14 C -0.177 4.177 15 C -0.515 4.515 16 Si 1.219 2.781 17 C -0.513 4.513 18 C -0.165 4.165 19 C -0.158 4.158 20 C -0.481 4.481 21 C -0.529 4.529 22 C -0.009 4.009 23 C -0.122 4.122 24 C -0.336 4.336 25 S 0.413 5.587 26 H 0.246 0.754 27 H 0.163 0.837 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.197 0.803 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.803 -0.809 4.662 7.488 hybrid contribution -1.162 -0.996 0.311 1.561 sum 4.642 -1.804 4.973 7.037 Atomic orbital electron populations 1.86548 1.17155 1.76148 1.56120 1.25347 0.85197 1.13787 0.96550 0.85673 0.82459 0.72117 0.83966 1.13908 1.15198 1.15424 1.25157 1.00221 0.98135 1.00776 1.30012 1.26019 1.10138 1.11322 1.01031 0.73114 0.71794 0.72608 1.93515 1.85789 1.85460 1.31381 1.93507 1.48750 1.71995 1.82119 1.57385 1.68383 1.22203 1.35236 1.21874 0.96934 0.88416 0.95389 1.22833 0.93332 1.03066 0.98463 1.26846 1.01007 1.03724 1.19961 0.79234 0.66279 0.67610 0.65021 1.26858 1.20064 1.00385 1.03999 1.22111 0.99080 0.95101 1.00222 1.21855 0.93919 1.00273 0.99755 1.26505 1.00938 1.13089 1.07559 1.25664 0.99699 1.13661 1.13842 1.20133 0.92603 1.05405 0.82745 1.20018 0.95429 1.02294 0.94481 1.26242 1.03359 0.98822 1.05220 1.84397 1.26040 1.28562 1.19681 0.75394 0.83683 0.90032 0.84955 0.92766 0.88656 0.94383 0.90824 0.89989 0.91638 0.92066 0.92279 0.91702 0.91424 0.89125 0.87723 0.86438 0.91262 0.90439 0.85520 0.80297 0.77761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.50 9.69 -124.84 -1.21 -5.71 16 2 C -0.10 -0.45 2.36 71.24 0.17 -0.28 16 3 Si 0.94 0.03 26.38 68.60 1.81 1.84 16 4 H -0.22 0.38 7.11 99.48 0.71 1.09 16 5 H -0.23 -0.31 7.11 99.48 0.71 0.40 16 6 H -0.23 0.10 7.11 99.48 0.71 0.80 16 7 C -0.12 -0.57 5.77 24.59 0.14 -0.43 16 8 C -0.67 -3.24 5.72 21.21 0.12 -3.12 16 9 S 2.73 22.57 3.85 -56.49 -0.22 22.36 16 10 O -0.97 -13.74 14.60 -122.57 -1.79 -15.53 16 11 O -0.97 -12.62 15.32 -120.75 -1.85 -14.47 16 12 N -0.99 0.18 1.53 -526.27 -0.80 -0.62 16 13 C 0.10 -0.36 5.36 87.73 0.47 0.11 16 14 C -0.14 -0.17 5.53 32.81 0.18 0.01 16 15 C -0.43 -1.44 4.44 73.32 0.33 -1.11 16 16 Si 1.03 -2.76 9.04 68.60 0.62 -2.14 16 17 C -0.43 -0.30 5.94 73.18 0.44 0.14 16 18 C -0.13 0.04 5.97 32.06 0.19 0.23 16 19 C -0.12 0.42 6.10 31.80 0.19 0.61 16 20 C -0.39 2.67 4.73 72.93 0.35 3.02 16 21 C -0.44 0.90 5.14 69.95 0.36 1.26 16 22 C 0.11 -0.56 4.53 84.22 0.38 -0.17 16 23 C -0.09 0.11 9.74 21.21 0.21 0.31 16 24 C -0.20 0.60 11.23 66.72 0.75 1.35 16 25 S 0.15 0.00 20.87 -56.49 -1.18 -1.18 16 26 H 0.40 0.93 8.50 -74.05 -0.63 0.30 16 27 H 0.15 0.56 7.96 -2.38 -0.02 0.54 16 28 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H 0.13 -1.51 5.61 -2.39 -0.01 -1.52 16 30 H 0.05 0.39 6.93 -2.39 -0.02 0.37 16 31 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.04 0.33 7.57 -2.39 -0.02 0.31 16 33 H 0.07 0.22 7.90 -2.39 -0.02 0.20 16 34 H 0.08 0.02 8.04 -2.39 -0.02 0.00 16 35 H 0.06 0.17 8.04 -2.39 -0.02 0.15 16 36 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 38 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.09 -0.72 8.01 -2.39 -0.02 -0.74 16 41 H 0.10 -1.16 7.18 -2.39 -0.02 -1.18 16 42 H 0.12 -0.73 8.02 -2.39 -0.02 -0.75 16 43 H 0.07 0.28 6.95 -2.39 -0.02 0.26 16 44 H 0.08 -0.47 7.90 -2.39 -0.02 -0.49 16 45 H 0.13 -1.65 5.99 -2.39 -0.01 -1.67 16 46 H 0.18 -1.36 7.16 -2.91 -0.02 -1.38 16 47 H 0.21 -1.96 8.06 -2.91 -0.02 -1.98 16 Total: 0.00 -20.94 373.83 0.75 -20.19 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: 1.10 Total: -6.67 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 4.27 Total: 1.93 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -0.80 Total: -0.62 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -4.85 Total: -35.71 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.43 Total: -0.30 kcal Atomic # 16 Polarization: 22.58 SS G_CDS: -1.40 Total: 21.18 kcal Total: -20.94 0.75 -20.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_14772022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.321 kcal (2) G-P(sol) polarization free energy of solvation -20.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds