Wall clock time and date at job start Mon Mar 8 2021 11:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47678 * 2 1 4 4 H 1.48496 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47252 * 300.00140 * 3 2 1 6 6 H 1.48504 * 109.46901 * 59.99577 * 3 2 1 7 7 C 1.50699 * 109.47302 * 239.99634 * 2 1 3 8 8 C 1.33391 * 125.20493 * 300.34390 * 7 2 1 9 9 C 1.38423 * 114.91980 * 180.20374 * 8 7 2 10 10 S 1.76204 * 122.53668 * 179.76028 * 9 8 7 11 11 O 1.42099 * 106.40149 * 156.19877 * 10 9 8 12 12 O 1.42099 * 106.40451 * 23.27648 * 10 9 8 13 13 N 1.65596 * 107.21592 * 269.73423 * 10 9 8 14 14 C 1.46119 * 122.74578 * 83.74168 * 13 10 9 15 15 C 1.45999 * 114.84952 * 78.72033 * 14 13 10 16 16 C 1.56491 * 109.11235 * 60.17404 * 15 14 13 17 17 Si 1.83357 * 108.27965 * 291.77887 * 16 15 14 18 18 C 1.88357 * 111.31772 * 210.69682 * 17 16 15 19 19 C 1.56246 * 99.08983 * 97.70713 * 18 17 16 20 20 C 1.53716 * 109.69272 * 39.75237 * 19 18 17 21 21 C 1.55530 * 111.35795 * 311.82980 * 20 19 18 22 22 C 1.87792 * 113.97709 * 86.47255 * 17 16 15 23 23 C 1.44744 * 122.74885 * 263.73979 * 13 10 9 24 24 C 1.33384 * 114.92124 * 359.49379 * 9 8 7 25 25 S 1.75882 * 109.59649 * 0.26729 * 24 9 8 26 26 H 0.96706 * 114.00030 * 300.00416 * 1 2 3 27 27 H 1.09008 * 109.46575 * 120.00217 * 2 1 3 28 28 H 1.08003 * 122.53918 * 359.96794 * 8 7 2 29 29 H 1.09005 * 108.40704 * 317.33046 * 14 13 10 30 30 H 1.09001 * 108.41028 * 200.10746 * 14 13 10 31 31 H 1.09000 * 109.54321 * 180.08965 * 15 14 13 32 32 H 1.09006 * 109.54109 * 300.26180 * 15 14 13 33 33 H 1.08992 * 109.70205 * 51.40429 * 16 15 14 34 34 H 1.08997 * 109.70312 * 172.01886 * 16 15 14 35 35 H 1.09002 * 111.46904 * 215.17284 * 18 17 16 36 36 H 1.08993 * 111.47209 * 340.23323 * 18 17 16 37 37 H 1.09003 * 109.43116 * 279.68314 * 19 18 17 38 38 H 1.08998 * 109.39593 * 159.80431 * 19 18 17 39 39 H 1.08995 * 109.10869 * 191.33286 * 20 19 18 40 40 H 1.08996 * 109.01971 * 72.27391 * 20 19 18 41 41 H 1.09001 * 111.11048 * 270.21992 * 21 20 19 42 42 H 1.09002 * 111.14255 * 146.11365 * 21 20 19 43 43 H 1.08994 * 110.13232 * 201.86988 * 22 17 16 44 44 H 1.09003 * 110.13180 * 80.13462 * 22 17 16 45 45 H 1.08995 * 110.00883 * 50.50984 * 23 13 10 46 46 H 1.08998 * 110.01515 * 171.84646 * 23 13 10 47 47 H 1.08001 * 125.20151 * 180.29314 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 1 3.5351 1.7563 0.0006 5 1 1.5552 2.4565 -1.2125 6 1 1.5551 2.4564 1.2125 7 6 1.9314 -0.7105 -1.2304 8 6 1.6686 -1.9794 -1.5468 9 6 2.2440 -2.4173 -2.7272 10 16 2.0334 -4.0587 -3.3323 11 8 2.2480 -3.9996 -4.7357 12 8 0.8344 -4.5506 -2.7494 13 7 3.2656 -4.9727 -2.7090 14 6 3.2105 -5.5704 -1.3768 15 6 2.4124 -6.7894 -1.2838 16 6 3.0160 -7.8712 -2.2400 17 14 2.7495 -7.3232 -3.9693 18 6 2.5479 -8.7929 -5.1300 19 6 0.9878 -8.8374 -5.2033 20 6 0.4313 -7.4060 -5.2689 21 6 1.0741 -6.4980 -4.1820 22 6 4.0960 -6.1916 -4.6273 23 6 4.4854 -5.2449 -3.4391 24 6 2.9653 -1.5009 -3.3747 25 16 2.9474 0.0090 -2.4729 26 1 -0.3933 0.4418 0.7651 27 1 1.7922 -0.5139 0.8901 28 1 1.0566 -2.6179 -0.9270 29 1 2.7974 -4.8350 -0.6863 30 1 4.2279 -5.8003 -1.0602 31 1 2.4291 -7.1589 -0.2584 32 1 1.3847 -6.5756 -1.5775 33 1 4.0840 -7.9756 -2.0491 34 1 2.5175 -8.8265 -2.0753 35 1 2.9877 -8.5928 -6.1072 36 1 2.9531 -9.7053 -4.6926 37 1 0.5974 -9.3382 -4.3173 38 1 0.6828 -9.3864 -6.0941 39 1 -0.6476 -7.4354 -5.1169 40 1 0.6416 -6.9880 -6.2533 41 1 0.5008 -6.5288 -3.2555 42 1 1.1833 -5.4741 -4.5395 43 1 3.7177 -5.6060 -5.4651 44 1 4.9605 -6.7784 -4.9382 45 1 4.9046 -4.3155 -3.8245 46 1 5.2075 -5.7381 -2.7885 47 1 3.4810 -1.6615 -4.3099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607860_15065232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:19 Heat of formation + Delta-G solvation = -75.636704 kcal Electronic energy + Delta-G solvation = -30071.687058 eV Core-core repulsion = 26211.866593 eV Total energy + Delta-G solvation = -3859.820465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 375.095 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.41944 -39.22518 -38.24528 -37.61764 -37.21131 -35.91764 -34.12050 -32.01602 -30.43266 -29.62955 -27.25957 -26.83472 -25.30836 -24.69796 -23.59118 -22.61043 -21.25792 -20.80350 -19.60553 -18.94454 -18.58800 -18.35073 -17.83258 -17.16745 -16.58943 -16.24986 -15.98899 -15.78544 -15.54411 -15.34527 -15.07191 -14.87086 -14.63621 -14.39320 -14.30630 -14.14960 -14.09467 -13.90685 -13.69048 -13.25938 -13.02999 -12.96196 -12.89839 -12.78989 -12.66432 -12.53253 -12.47915 -12.28121 -12.21690 -11.97342 -11.82200 -11.80600 -11.58601 -11.31908 -11.11008 -10.67090 -10.54113 -10.42103 -10.14979 -10.10771 -9.98667 -9.84000 -0.75871 -0.47902 0.25734 0.52214 0.88385 1.06585 1.28297 1.31737 1.69365 1.73909 1.80022 1.98166 2.06086 2.70361 2.81179 3.14002 3.31887 3.60670 3.63619 3.82999 3.91213 4.08973 4.14456 4.24773 4.26676 4.28089 4.32105 4.45827 4.50360 4.51380 4.62341 4.65763 4.73629 4.76651 4.80934 4.84280 4.90363 4.94863 5.04837 5.08262 5.15623 5.18256 5.24456 5.35534 5.41512 5.50750 5.53231 5.55101 5.59684 5.80989 6.40644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.041 4.041 3 Si 0.887 3.113 4 H -0.232 1.232 5 H -0.230 1.230 6 H -0.226 1.226 7 C -0.184 4.184 8 C -0.042 4.042 9 C -0.693 4.693 10 S 2.716 3.284 11 O -0.942 6.942 12 O -0.935 6.935 13 N -0.997 5.997 14 C 0.119 3.881 15 C -0.144 4.144 16 C -0.403 4.403 17 Si 0.964 3.036 18 C -0.402 4.402 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.441 4.441 22 C -0.434 4.434 23 C 0.129 3.871 24 C -0.083 4.083 25 S 0.147 5.853 26 H 0.385 0.615 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 1.070 4.808 6.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.154 4.154 3 Si 0.706 3.294 4 H -0.154 1.154 5 H -0.152 1.152 6 H -0.148 1.148 7 C -0.301 4.301 8 C -0.071 4.071 9 C -0.792 4.792 10 S 2.804 3.196 11 O -0.932 6.932 12 O -0.925 6.925 13 N -0.835 5.835 14 C -0.006 4.006 15 C -0.183 4.183 16 C -0.491 4.491 17 Si 1.158 2.842 18 C -0.488 4.488 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.527 4.527 22 C -0.521 4.521 23 C 0.004 3.996 24 C -0.222 4.222 25 S 0.411 5.589 26 H 0.233 0.767 27 H 0.107 0.893 28 H 0.177 0.823 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.093 2.878 3.577 6.857 hybrid contribution -0.673 -0.912 0.882 1.436 sum 4.420 1.966 4.459 6.579 Atomic orbital electron populations 1.86537 1.16562 1.81724 1.49843 1.23977 0.86064 1.09689 0.95656 0.86386 0.82308 0.76145 0.84543 1.15448 1.15236 1.14814 1.23830 1.07139 0.97842 1.01323 1.19593 0.97756 0.95333 0.94407 1.30205 1.14016 1.26510 1.08492 1.02042 0.72720 0.71442 0.73399 1.93581 1.85274 1.86690 1.27659 1.93662 1.41877 1.77576 1.79407 1.57670 1.34139 1.64090 1.27553 1.19922 1.02877 0.95835 0.81928 1.21145 1.01621 0.94541 1.00991 1.26297 1.04028 1.02750 1.15990 0.80165 0.67685 0.68696 0.67650 1.26661 0.98343 1.13543 1.10296 1.21998 0.94725 0.96955 1.02080 1.21715 1.00469 0.93966 0.98851 1.27970 1.18324 1.03113 1.03294 1.27724 1.12800 1.08233 1.03387 1.21515 0.85310 0.99587 0.93176 1.25838 0.98654 0.95652 1.02101 1.84422 1.47023 1.13298 1.14113 0.76721 0.89313 0.82347 0.91254 0.89553 0.89659 0.89247 0.90269 0.90016 0.90330 0.90564 0.91881 0.91742 0.91820 0.91988 0.87543 0.91629 0.88003 0.89496 0.90902 0.88722 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.03 12.83 -35.23 -0.45 -0.42 16 2 C -0.04 0.03 2.95 36.00 0.11 0.14 16 3 Si 0.89 -0.91 26.25 -169.99 -4.46 -5.38 16 4 H -0.23 0.18 7.11 56.52 0.40 0.59 16 5 H -0.23 -0.13 7.11 56.52 0.40 0.27 16 6 H -0.23 0.36 7.11 56.52 0.40 0.76 16 7 C -0.18 -0.26 5.76 -36.00 -0.21 -0.47 16 8 C -0.04 -0.08 9.56 -41.21 -0.39 -0.48 16 9 C -0.69 -1.33 5.89 -41.21 -0.24 -1.57 16 10 S 2.72 6.47 3.44 -107.50 -0.37 6.10 16 11 O -0.94 -3.94 13.09 -57.17 -0.75 -4.69 16 12 O -0.93 -3.94 12.44 -57.17 -0.71 -4.65 16 13 N -1.00 0.63 1.78 -117.37 -0.21 0.42 16 14 C 0.12 -0.25 4.97 -7.57 -0.04 -0.29 16 15 C -0.14 0.18 5.61 -28.17 -0.16 0.02 16 16 C -0.40 0.51 4.83 39.04 0.19 0.70 16 17 Si 0.96 0.12 8.63 -169.99 -1.47 -1.35 16 18 C -0.40 -0.35 5.95 38.90 0.23 -0.12 16 19 C -0.12 -0.22 5.96 -24.62 -0.15 -0.36 16 20 C -0.11 -0.35 6.09 -25.01 -0.15 -0.50 16 21 C -0.44 -1.46 3.57 38.50 0.14 -1.32 16 22 C -0.43 0.16 4.93 39.23 0.19 0.35 16 23 C 0.13 -0.24 5.97 -2.91 -0.02 -0.25 16 24 C -0.08 -0.07 10.70 29.04 0.31 0.24 16 25 S 0.15 0.11 20.58 -107.50 -2.21 -2.10 16 26 H 0.38 -1.85 8.74 45.56 0.40 -1.45 16 27 H 0.09 -0.28 7.96 -51.92 -0.41 -0.69 16 28 H 0.16 0.18 7.96 -52.48 -0.42 -0.24 16 29 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 30 H 0.09 -0.37 7.19 -51.93 -0.37 -0.74 16 31 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 32 H 0.09 0.03 5.02 -51.93 -0.26 -0.24 16 33 H 0.08 -0.20 7.93 -51.93 -0.41 -0.61 16 34 H 0.08 -0.10 7.95 -51.93 -0.41 -0.51 16 35 H 0.08 0.07 8.05 -51.93 -0.42 -0.35 16 36 H 0.08 0.00 8.05 -51.93 -0.42 -0.41 16 37 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.11 0.38 5.18 -51.93 -0.27 0.11 16 42 H 0.07 0.29 3.15 -26.66 -0.08 0.21 16 43 H 0.10 0.14 6.66 -51.93 -0.35 -0.21 16 44 H 0.09 -0.16 8.00 -51.93 -0.42 -0.58 16 45 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 46 H 0.09 -0.40 7.19 -51.93 -0.37 -0.77 16 47 H 0.19 -0.28 8.00 -52.49 -0.42 -0.70 16 LS Contribution 367.12 15.07 5.53 5.53 Total: 0.00 -7.37 367.12 -11.68 -19.05 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -6.39 Total: -8.59 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.19 Total: -3.92 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -0.21 Total: 0.42 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -1.91 Total: -9.76 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: -5.93 Total: -6.73 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -2.58 Total: 3.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -7.37 -11.68 -19.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_15065232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.590 kcal (2) G-P(sol) polarization free energy of solvation -7.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds