Wall clock time and date at job start Mon Mar 8 2021 11:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47678 * 2 1 4 4 H 1.48496 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47252 * 300.00140 * 3 2 1 6 6 H 1.48504 * 109.46901 * 59.99577 * 3 2 1 7 7 C 1.50699 * 109.47302 * 239.99634 * 2 1 3 8 8 C 1.33391 * 125.20493 * 300.34390 * 7 2 1 9 9 C 1.38423 * 114.91980 * 180.20374 * 8 7 2 10 10 S 1.76204 * 122.53668 * 179.76028 * 9 8 7 11 11 O 1.42099 * 106.40149 * 156.19877 * 10 9 8 12 12 O 1.42099 * 106.40451 * 23.27648 * 10 9 8 13 13 N 1.65596 * 107.21592 * 269.73423 * 10 9 8 14 14 C 1.46119 * 122.74578 * 83.74168 * 13 10 9 15 15 C 1.45999 * 114.84952 * 78.72033 * 14 13 10 16 16 C 1.56491 * 109.11235 * 60.17404 * 15 14 13 17 17 Si 1.83357 * 108.27965 * 291.77887 * 16 15 14 18 18 C 1.88357 * 111.31772 * 210.69682 * 17 16 15 19 19 C 1.56246 * 99.08983 * 97.70713 * 18 17 16 20 20 C 1.53716 * 109.69272 * 39.75237 * 19 18 17 21 21 C 1.55530 * 111.35795 * 311.82980 * 20 19 18 22 22 C 1.87792 * 113.97709 * 86.47255 * 17 16 15 23 23 C 1.44744 * 122.74885 * 263.73979 * 13 10 9 24 24 C 1.33384 * 114.92124 * 359.49379 * 9 8 7 25 25 S 1.75882 * 109.59649 * 0.26729 * 24 9 8 26 26 H 0.96706 * 114.00030 * 300.00416 * 1 2 3 27 27 H 1.09008 * 109.46575 * 120.00217 * 2 1 3 28 28 H 1.08003 * 122.53918 * 359.96794 * 8 7 2 29 29 H 1.09005 * 108.40704 * 317.33046 * 14 13 10 30 30 H 1.09001 * 108.41028 * 200.10746 * 14 13 10 31 31 H 1.09000 * 109.54321 * 180.08965 * 15 14 13 32 32 H 1.09006 * 109.54109 * 300.26180 * 15 14 13 33 33 H 1.08992 * 109.70205 * 51.40429 * 16 15 14 34 34 H 1.08997 * 109.70312 * 172.01886 * 16 15 14 35 35 H 1.09002 * 111.46904 * 215.17284 * 18 17 16 36 36 H 1.08993 * 111.47209 * 340.23323 * 18 17 16 37 37 H 1.09003 * 109.43116 * 279.68314 * 19 18 17 38 38 H 1.08998 * 109.39593 * 159.80431 * 19 18 17 39 39 H 1.08995 * 109.10869 * 191.33286 * 20 19 18 40 40 H 1.08996 * 109.01971 * 72.27391 * 20 19 18 41 41 H 1.09001 * 111.11048 * 270.21992 * 21 20 19 42 42 H 1.09002 * 111.14255 * 146.11365 * 21 20 19 43 43 H 1.08994 * 110.13232 * 201.86988 * 22 17 16 44 44 H 1.09003 * 110.13180 * 80.13462 * 22 17 16 45 45 H 1.08995 * 110.00883 * 50.50984 * 23 13 10 46 46 H 1.08998 * 110.01515 * 171.84646 * 23 13 10 47 47 H 1.08001 * 125.20151 * 180.29314 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 1 3.5351 1.7563 0.0006 5 1 1.5552 2.4565 -1.2125 6 1 1.5551 2.4564 1.2125 7 6 1.9314 -0.7105 -1.2304 8 6 1.6686 -1.9794 -1.5468 9 6 2.2440 -2.4173 -2.7272 10 16 2.0334 -4.0587 -3.3323 11 8 2.2480 -3.9996 -4.7357 12 8 0.8344 -4.5506 -2.7494 13 7 3.2656 -4.9727 -2.7090 14 6 3.2105 -5.5704 -1.3768 15 6 2.4124 -6.7894 -1.2838 16 6 3.0160 -7.8712 -2.2400 17 14 2.7495 -7.3232 -3.9693 18 6 2.5479 -8.7929 -5.1300 19 6 0.9878 -8.8374 -5.2033 20 6 0.4313 -7.4060 -5.2689 21 6 1.0741 -6.4980 -4.1820 22 6 4.0960 -6.1916 -4.6273 23 6 4.4854 -5.2449 -3.4391 24 6 2.9653 -1.5009 -3.3747 25 16 2.9474 0.0090 -2.4729 26 1 -0.3933 0.4418 0.7651 27 1 1.7922 -0.5139 0.8901 28 1 1.0566 -2.6179 -0.9270 29 1 2.7974 -4.8350 -0.6863 30 1 4.2279 -5.8003 -1.0602 31 1 2.4291 -7.1589 -0.2584 32 1 1.3847 -6.5756 -1.5775 33 1 4.0840 -7.9756 -2.0491 34 1 2.5175 -8.8265 -2.0753 35 1 2.9877 -8.5928 -6.1072 36 1 2.9531 -9.7053 -4.6926 37 1 0.5974 -9.3382 -4.3173 38 1 0.6828 -9.3864 -6.0941 39 1 -0.6476 -7.4354 -5.1169 40 1 0.6416 -6.9880 -6.2533 41 1 0.5008 -6.5288 -3.2555 42 1 1.1833 -5.4741 -4.5395 43 1 3.7177 -5.6060 -5.4651 44 1 4.9605 -6.7784 -4.9382 45 1 4.9046 -4.3155 -3.8245 46 1 5.2075 -5.7381 -2.7885 47 1 3.4810 -1.6615 -4.3099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607860_15065232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:18 Heat of formation + Delta-G solvation = -71.714989 kcal Electronic energy + Delta-G solvation = -30071.517000 eV Core-core repulsion = 26211.866593 eV Total energy + Delta-G solvation = -3859.650407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 375.095 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.44962 -39.09569 -38.44378 -37.57579 -37.41173 -36.09762 -33.98293 -32.03702 -30.33130 -29.77345 -27.26194 -26.69285 -25.41072 -24.73731 -23.54066 -22.49691 -21.35564 -20.91648 -19.66774 -18.99112 -18.55755 -18.31889 -17.88987 -17.11945 -16.59436 -16.30114 -15.93732 -15.88547 -15.66610 -15.36106 -14.98114 -14.79262 -14.55722 -14.41190 -14.39813 -14.19817 -14.11044 -13.94480 -13.64533 -13.39031 -13.12612 -13.00464 -12.96351 -12.80411 -12.67329 -12.49771 -12.42227 -12.34805 -12.17202 -12.03520 -11.86765 -11.74042 -11.48323 -11.45226 -11.28360 -10.62761 -10.48108 -10.40852 -10.16248 -10.12884 -9.97644 -9.89533 -0.84865 -0.55424 0.22764 0.48446 0.87857 1.06611 1.36703 1.38796 1.62855 1.80960 1.82131 2.00279 2.11525 2.68183 2.72407 3.12309 3.37075 3.69357 3.81489 3.86339 4.04527 4.06604 4.09739 4.14737 4.25774 4.30223 4.39790 4.47865 4.54987 4.57453 4.65444 4.66946 4.74961 4.83643 4.86837 4.94369 4.96787 4.98263 5.00957 5.03574 5.10411 5.17541 5.22190 5.27921 5.37700 5.47509 5.50498 5.61355 5.63733 5.73843 6.73108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.044 4.044 3 Si 0.909 3.091 4 H -0.234 1.234 5 H -0.259 1.259 6 H -0.213 1.213 7 C -0.193 4.193 8 C -0.058 4.058 9 C -0.703 4.703 10 S 2.721 3.279 11 O -0.969 6.969 12 O -0.963 6.963 13 N -0.990 5.990 14 C 0.107 3.893 15 C -0.149 4.149 16 C -0.395 4.395 17 Si 0.998 3.002 18 C -0.412 4.412 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.473 4.473 22 C -0.440 4.440 23 C 0.121 3.879 24 C -0.087 4.087 25 S 0.152 5.848 26 H 0.403 0.597 27 H 0.116 0.884 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.132 0.868 47 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 0.574 6.686 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.156 4.156 3 Si 0.729 3.271 4 H -0.157 1.157 5 H -0.183 1.183 6 H -0.135 1.135 7 C -0.311 4.311 8 C -0.086 4.086 9 C -0.803 4.803 10 S 2.810 3.190 11 O -0.959 6.959 12 O -0.953 6.953 13 N -0.829 5.829 14 C -0.017 4.017 15 C -0.188 4.188 16 C -0.485 4.485 17 Si 1.190 2.810 18 C -0.497 4.497 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.555 4.555 22 C -0.528 4.528 23 C -0.004 4.004 24 C -0.226 4.226 25 S 0.416 5.584 26 H 0.255 0.745 27 H 0.134 0.866 28 H 0.177 0.823 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.150 0.850 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.378 2.391 5.448 9.478 hybrid contribution -1.491 -0.710 0.252 1.671 sum 5.886 1.681 5.700 8.364 Atomic orbital electron populations 1.86487 1.17005 1.82273 1.51436 1.24122 0.85867 1.09931 0.95725 0.86101 0.81846 0.75574 0.83622 1.15676 1.18315 1.13462 1.24201 1.06987 0.97845 1.02060 1.19704 0.98334 0.95832 0.94766 1.30175 1.14712 1.26518 1.08853 1.01600 0.72899 0.71683 0.72812 1.93540 1.85762 1.87141 1.29489 1.93623 1.43881 1.78169 1.79675 1.57444 1.33843 1.63228 1.28382 1.20207 1.04845 0.95564 0.81069 1.21197 1.00540 0.95135 1.01910 1.26173 1.05774 1.02614 1.13912 0.79841 0.65070 0.67301 0.68814 1.26791 0.97161 1.15003 1.10773 1.22010 0.95935 0.95724 1.02389 1.21790 1.00143 0.95249 0.98537 1.28337 1.21995 1.02664 1.02506 1.27726 1.13325 1.08349 1.03394 1.21829 0.85183 1.00121 0.93231 1.26123 0.98398 0.95476 1.02603 1.84376 1.46856 1.13115 1.14009 0.74513 0.86621 0.82267 0.90598 0.86054 0.87899 0.91645 0.87601 0.89805 0.90622 0.89166 0.91168 0.91851 0.92859 0.93023 0.88587 0.93258 0.90325 0.87463 0.90067 0.85022 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.03 12.83 -148.98 -1.91 -1.88 16 2 C -0.04 0.08 2.95 71.24 0.21 0.29 16 3 Si 0.91 -2.11 26.25 68.60 1.80 -0.31 16 4 H -0.23 0.49 7.11 99.48 0.71 1.20 16 5 H -0.26 -0.59 7.11 99.48 0.71 0.11 16 6 H -0.21 0.94 7.11 99.48 0.71 1.65 16 7 C -0.19 -0.62 5.76 24.59 0.14 -0.48 16 8 C -0.06 -0.28 9.56 21.22 0.20 -0.08 16 9 C -0.70 -3.46 5.89 21.21 0.12 -3.34 16 10 S 2.72 17.29 3.44 -56.49 -0.19 17.10 16 11 O -0.97 -10.39 13.09 -128.00 -1.68 -12.06 16 12 O -0.96 -10.70 12.44 -128.00 -1.59 -12.29 16 13 N -0.99 1.76 1.78 -525.24 -0.93 0.83 16 14 C 0.11 -0.63 4.97 84.30 0.42 -0.21 16 15 C -0.15 0.53 5.61 29.66 0.17 0.70 16 16 C -0.40 1.78 4.83 73.20 0.35 2.13 16 17 Si 1.00 0.20 8.63 68.60 0.59 0.80 16 18 C -0.41 -0.77 5.95 73.11 0.43 -0.34 16 19 C -0.12 -0.63 5.96 31.96 0.19 -0.44 16 20 C -0.12 -1.10 6.09 31.71 0.19 -0.91 16 21 C -0.47 -4.39 3.57 72.85 0.26 -4.13 16 22 C -0.44 0.59 4.93 73.32 0.36 0.95 16 23 C 0.12 -0.65 5.97 88.05 0.53 -0.13 16 24 C -0.09 -0.21 10.70 66.72 0.71 0.50 16 25 S 0.15 0.30 20.58 -56.49 -1.16 -0.86 16 26 H 0.40 -4.03 8.74 -74.05 -0.65 -4.67 16 27 H 0.12 -0.87 7.96 -2.38 -0.02 -0.88 16 28 H 0.16 0.59 7.96 -2.91 -0.02 0.57 16 29 H 0.08 -0.53 8.14 -2.38 -0.02 -0.55 16 30 H 0.12 -1.52 7.19 -2.39 -0.02 -1.54 16 31 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.06 0.11 5.02 -2.38 -0.01 0.09 16 33 H 0.11 -0.98 7.93 -2.39 -0.02 -1.00 16 34 H 0.08 -0.36 7.95 -2.39 -0.02 -0.38 16 35 H 0.07 0.17 8.05 -2.39 -0.02 0.15 16 36 H 0.09 -0.09 8.05 -2.39 -0.02 -0.11 16 37 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 1.01 5.18 -2.39 -0.01 0.99 16 42 H 0.05 0.61 3.15 -18.45 -0.06 0.55 16 43 H 0.08 0.30 6.66 -2.39 -0.02 0.29 16 44 H 0.11 -0.60 8.00 -2.39 -0.02 -0.62 16 45 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.13 -1.65 7.19 -2.39 -0.02 -1.67 16 47 H 0.20 -0.47 8.00 -2.91 -0.02 -0.49 16 Total: 0.00 -20.53 367.12 0.26 -20.26 By element: Atomic # 1 Polarization: -7.16 SS G_CDS: 1.04 Total: -6.11 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 4.30 Total: -5.47 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -0.93 Total: 0.83 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -5.18 Total: -26.23 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.39 Total: 0.49 kcal Atomic # 16 Polarization: 17.59 SS G_CDS: -1.36 Total: 16.23 kcal Total: -20.53 0.26 -20.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_15065232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.451 kcal (2) G-P(sol) polarization free energy of solvation -20.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds