Wall clock time and date at job start Mon Mar 8 2021 11:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33391 * 125.20054 * 2 1 4 4 C 1.50701 * 122.53895 * 359.97162 * 3 2 1 5 5 O 1.42900 * 109.47339 * 63.61161 * 4 3 2 6 6 Si 1.86298 * 109.47348 * 303.60890 * 4 3 2 7 7 H 1.48503 * 109.47184 * 76.35141 * 6 4 3 8 8 H 1.48498 * 109.47626 * 196.35668 * 6 4 3 9 9 H 1.48501 * 109.47035 * 316.35671 * 6 4 3 10 10 C 1.38426 * 114.92036 * 180.20500 * 3 2 1 11 11 S 1.76207 * 122.53717 * 179.76137 * 10 3 2 12 12 O 1.42098 * 106.39656 * 162.93319 * 11 10 3 13 13 O 1.42093 * 106.40183 * 30.01297 * 11 10 3 14 14 N 1.65603 * 107.21641 * 276.46881 * 11 10 3 15 15 C 1.46119 * 122.74012 * 84.35915 * 14 11 10 16 16 C 1.45993 * 114.85091 * 78.72179 * 15 14 11 17 17 C 1.56485 * 109.11410 * 60.16741 * 16 15 14 18 18 Si 1.83349 * 108.28276 * 291.78462 * 17 16 15 19 19 C 1.88362 * 111.31922 * 210.69544 * 18 17 16 20 20 C 1.56248 * 99.08870 * 97.69805 * 19 18 17 21 21 C 1.53717 * 109.69022 * 39.75688 * 20 19 18 22 22 C 1.55524 * 111.35989 * 311.82602 * 21 20 19 23 23 C 1.87794 * 113.98335 * 86.46917 * 18 17 16 24 24 C 1.44734 * 122.74993 * 264.35559 * 14 11 10 25 25 C 1.33380 * 114.92179 * 359.49497 * 10 3 2 26 26 C 1.50706 * 125.20567 * 180.28815 * 25 10 3 27 27 S 1.75880 * 125.20705 * 179.68636 * 2 1 3 28 28 H 1.09010 * 109.47033 * 185.90684 * 1 2 3 29 29 H 1.08997 * 109.47438 * 305.90594 * 1 2 3 30 30 H 1.08999 * 109.47577 * 65.91036 * 1 2 3 31 31 H 1.09005 * 109.47062 * 183.61251 * 4 3 2 32 32 H 0.96702 * 114.00030 * 301.09843 * 5 4 3 33 33 H 1.08999 * 108.40812 * 317.32773 * 15 14 11 34 34 H 1.08994 * 108.40273 * 200.11296 * 15 14 11 35 35 H 1.08998 * 109.54316 * 180.08657 * 16 15 14 36 36 H 1.09006 * 109.54193 * 300.25563 * 16 15 14 37 37 H 1.09005 * 109.70097 * 51.40219 * 17 16 15 38 38 H 1.08997 * 109.70728 * 172.01376 * 17 16 15 39 39 H 1.08999 * 111.47299 * 215.16613 * 19 18 17 40 40 H 1.09003 * 111.46925 * 340.22954 * 19 18 17 41 41 H 1.08997 * 109.44079 * 279.68034 * 20 19 18 42 42 H 1.09003 * 109.38818 * 159.80470 * 20 19 18 43 43 H 1.09007 * 109.10648 * 191.32463 * 21 20 19 44 44 H 1.08997 * 109.02571 * 72.27472 * 21 20 19 45 45 H 1.09000 * 111.10985 * 270.22145 * 22 21 20 46 46 H 1.09000 * 111.14664 * 146.11381 * 22 21 20 47 47 H 1.08995 * 110.13088 * 201.87741 * 23 18 17 48 48 H 1.08996 * 110.12913 * 80.13502 * 23 18 17 49 49 H 1.09000 * 110.01370 * 50.50922 * 24 14 11 50 50 H 1.08997 * 110.01577 * 171.93733 * 24 14 11 51 51 H 1.08997 * 109.46799 * 90.00033 * 26 25 10 52 52 H 1.08999 * 109.46658 * 209.99933 * 26 25 10 53 53 H 1.08998 * 109.46797 * 330.00216 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7050 2.4847 -0.0006 5 8 0.9699 2.6991 1.2059 6 14 0.5706 2.6907 -1.4639 7 1 -0.7182 2.0051 -1.1916 8 1 0.3225 4.1360 -1.6985 9 1 1.2031 2.0953 -2.6683 10 6 3.6379 0.8430 -0.0045 11 16 4.8355 2.1355 -0.0115 12 8 6.0655 1.5448 0.3853 13 8 4.2449 3.2334 0.6702 14 7 5.0321 2.6129 -1.5850 15 6 4.1535 3.5851 -2.2315 16 6 4.4272 4.9789 -1.8942 17 6 5.8889 5.3332 -2.3263 18 14 7.0476 4.4035 -1.2516 19 6 8.6565 5.3499 -0.9994 20 6 8.3439 6.0037 0.3849 21 6 7.6069 4.9943 1.2798 22 6 6.4287 4.3195 0.5213 23 6 7.4349 2.6715 -1.8653 24 6 6.0883 2.1016 -2.4322 25 6 3.9751 -0.4475 0.0025 26 6 5.3861 -0.9768 0.0059 27 16 2.5210 -1.4370 0.0079 28 1 -0.3633 -1.0223 0.1058 29 1 -0.3634 0.6026 0.8323 30 1 -0.3634 0.4194 -0.9381 31 1 2.5166 3.2095 -0.0653 32 1 0.2409 2.0776 1.3380 33 1 3.1247 3.3588 -1.9515 34 1 4.2458 3.4677 -3.3112 35 1 3.7247 5.6259 -2.4196 36 1 4.3200 5.1217 -0.8189 37 1 6.0442 5.0468 -3.3665 38 1 6.0572 6.4038 -2.2102 39 1 9.5107 4.6755 -0.9383 40 1 8.8014 6.1039 -1.7731 41 1 7.7171 6.8831 0.2375 42 1 9.2770 6.2998 0.8642 43 1 7.2172 5.5124 2.1561 44 1 8.3098 4.2264 1.6029 45 1 5.5067 4.8881 0.6427 46 1 6.2950 3.2863 0.8419 47 1 7.7872 2.0515 -1.0410 48 1 8.1865 2.7122 -2.6537 49 1 6.1002 1.0122 -2.3972 50 1 5.9416 2.4413 -3.4575 51 1 5.7259 -1.0989 1.0343 52 1 5.4138 -1.9404 -0.5028 53 1 6.0390 -0.2739 -0.5114 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607860_15065288.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:32 Heat of formation + Delta-G solvation = -62.511539 kcal Electronic energy + Delta-G solvation = -36232.676745 eV Core-core repulsion = 32062.350192 eV Total energy + Delta-G solvation = -4170.326553 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 403.127 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.45242 -39.21634 -38.69977 -37.45603 -37.26943 -36.10617 -34.24338 -34.05317 -31.10962 -30.33879 -29.77830 -28.16470 -26.76162 -26.05153 -25.18357 -23.64638 -23.20486 -22.56709 -21.26061 -20.63444 -19.72521 -18.83957 -18.69444 -17.97843 -17.37576 -17.13450 -16.56576 -16.24002 -15.99530 -15.96077 -15.78587 -15.64948 -15.29808 -15.01444 -14.79491 -14.58851 -14.53983 -14.41148 -14.31465 -14.18074 -14.01230 -13.73575 -13.69531 -13.57988 -13.29111 -13.26689 -12.99707 -12.83744 -12.79139 -12.68121 -12.46712 -12.37941 -12.30329 -12.10691 -12.05041 -11.89894 -11.74173 -11.52744 -11.42948 -11.28377 -11.20233 -10.60423 -10.51472 -10.42530 -10.13637 -10.09707 -9.98028 -9.49748 -0.86340 -0.51356 0.33310 0.60033 0.71542 1.05883 1.27105 1.42543 1.62162 1.79193 1.82370 1.96178 2.09497 2.64002 2.69779 3.08854 3.37768 3.46800 3.64968 3.70788 3.94264 3.95596 4.04950 4.07650 4.09330 4.19858 4.24344 4.30254 4.41534 4.43918 4.46657 4.49585 4.55059 4.59161 4.61101 4.65289 4.66979 4.78938 4.82803 4.85115 4.89926 4.95373 4.95727 5.03566 5.07046 5.10215 5.14674 5.17361 5.18569 5.27401 5.34417 5.46726 5.48966 5.57860 5.61364 5.68494 6.58568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.197 4.197 3 C -0.086 4.086 4 C -0.110 4.110 5 O -0.540 6.540 6 Si 0.925 3.075 7 H -0.207 1.207 8 H -0.246 1.246 9 H -0.230 1.230 10 C -0.706 4.706 11 S 2.714 3.286 12 O -0.958 6.958 13 O -0.958 6.958 14 N -0.994 5.994 15 C 0.102 3.898 16 C -0.155 4.155 17 C -0.395 4.395 18 Si 0.996 3.004 19 C -0.409 4.409 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.476 4.476 23 C -0.436 4.436 24 C 0.118 3.882 25 C -0.061 4.061 26 C -0.124 4.124 27 S 0.184 5.816 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.378 0.622 33 H 0.052 0.948 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.052 0.948 47 H 0.083 0.917 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.133 0.867 51 H 0.095 0.905 52 H 0.104 0.896 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -3.092 -8.538 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.315 4.315 3 C -0.097 4.097 4 C -0.220 4.220 5 O -0.348 6.348 6 Si 0.742 3.258 7 H -0.130 1.130 8 H -0.170 1.170 9 H -0.152 1.152 10 C -0.805 4.805 11 S 2.805 3.195 12 O -0.948 6.948 13 O -0.948 6.948 14 N -0.832 5.832 15 C -0.022 4.022 16 C -0.194 4.194 17 C -0.484 4.484 18 Si 1.187 2.813 19 C -0.495 4.495 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.557 4.557 23 C -0.524 4.524 24 C -0.006 4.006 25 C -0.182 4.182 26 C -0.182 4.182 27 S 0.450 5.550 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.228 0.772 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.128 0.872 49 H 0.100 0.900 50 H 0.151 0.849 51 H 0.114 0.886 52 H 0.123 0.877 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.577 -3.840 -8.420 9.606 hybrid contribution -0.038 0.478 1.425 1.504 sum -2.615 -3.362 -6.995 8.189 Atomic orbital electron populations 1.21067 0.85701 1.05812 1.04677 1.24690 1.01416 0.95160 1.10196 1.18679 0.90814 0.97355 1.02857 1.25827 1.03327 0.94383 0.98506 1.86627 1.48447 1.58787 1.40975 0.86232 0.80989 0.82546 0.76058 1.12976 1.16966 1.15245 1.29668 1.12426 1.14126 1.24314 1.01743 0.72571 0.72508 0.72710 1.93522 1.41949 1.78782 1.80512 1.93577 1.79222 1.50669 1.71305 1.57522 1.41478 1.53184 1.31041 1.20317 0.91885 0.88475 1.01500 1.21248 0.98282 0.96414 1.03448 1.26178 1.03631 1.08355 1.10243 0.79870 0.67578 0.68575 0.65250 1.26770 1.15141 1.08568 0.99003 1.22013 1.00032 0.98371 0.95672 1.21770 0.96477 0.98290 0.99006 1.28352 1.02390 1.02280 1.22728 1.27687 1.01239 1.16292 1.07193 1.21899 0.83418 0.99432 0.95896 1.24895 1.01951 0.95043 0.96292 1.21171 0.87550 1.03878 1.05645 1.84179 0.94275 1.07620 1.68880 0.88602 0.88766 0.88455 0.85121 0.77178 0.92967 0.85194 0.87540 0.91378 0.87297 0.89493 0.90454 0.89142 0.91285 0.91820 0.93077 0.92905 0.88847 0.92997 0.89871 0.87168 0.89951 0.84872 0.88631 0.87718 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.48 8.43 71.23 0.60 1.08 16 2 C -0.20 -0.37 6.04 24.59 0.15 -0.22 16 3 C -0.09 -0.49 4.48 -20.92 -0.09 -0.58 16 4 C -0.11 -0.63 2.21 71.24 0.16 -0.47 16 5 O -0.54 -3.88 12.87 -148.98 -1.92 -5.79 16 6 Si 0.92 -0.05 23.08 68.60 1.58 1.53 16 7 H -0.21 0.86 5.45 99.48 0.54 1.41 16 8 H -0.25 -0.29 7.11 99.48 0.71 0.42 16 9 H -0.23 0.45 7.11 99.48 0.71 1.15 16 10 C -0.71 -4.75 5.88 21.21 0.12 -4.62 16 11 S 2.71 20.80 2.97 -56.49 -0.17 20.63 16 12 O -0.96 -9.50 10.05 -128.00 -1.29 -10.79 16 13 O -0.96 -12.22 9.79 -128.00 -1.25 -13.47 16 14 N -0.99 0.26 1.78 -525.28 -0.93 -0.67 16 15 C 0.10 -0.35 4.79 84.30 0.40 0.05 16 16 C -0.16 0.35 5.61 29.66 0.17 0.51 16 17 C -0.39 1.69 4.83 73.20 0.35 2.04 16 18 Si 1.00 0.06 8.63 68.60 0.59 0.65 16 19 C -0.41 -0.60 5.95 73.11 0.43 -0.17 16 20 C -0.12 -0.62 5.96 31.96 0.19 -0.42 16 21 C -0.12 -1.09 6.09 31.71 0.19 -0.89 16 22 C -0.48 -4.47 3.58 72.85 0.26 -4.21 16 23 C -0.44 0.92 4.93 73.32 0.36 1.28 16 24 C 0.12 -0.61 5.98 88.05 0.53 -0.09 16 25 C -0.06 -0.24 6.50 24.59 0.16 -0.08 16 26 C -0.12 -0.07 9.15 71.24 0.65 0.58 16 27 S 0.18 0.13 23.31 -56.49 -1.32 -1.19 16 28 H 0.10 -0.67 8.14 -2.38 -0.02 -0.69 16 29 H 0.09 -0.64 5.73 -2.39 -0.01 -0.66 16 30 H 0.10 -0.56 4.72 -2.39 -0.01 -0.57 16 31 H 0.13 1.00 3.32 -2.38 -0.01 1.00 16 32 H 0.38 -0.30 5.85 -74.06 -0.43 -0.73 16 33 H 0.05 -0.14 3.83 -2.39 -0.01 -0.14 16 34 H 0.13 -1.44 7.19 -2.39 -0.02 -1.46 16 35 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.07 0.19 5.03 -2.38 -0.01 0.18 16 37 H 0.11 -1.03 7.93 -2.38 -0.02 -1.05 16 38 H 0.09 -0.38 7.95 -2.39 -0.02 -0.40 16 39 H 0.08 0.13 8.05 -2.39 -0.02 0.11 16 40 H 0.09 -0.12 8.05 -2.39 -0.02 -0.14 16 41 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.09 1.04 5.20 -2.39 -0.01 1.03 16 46 H 0.05 0.64 3.12 -18.51 -0.06 0.58 16 47 H 0.08 0.20 6.65 -2.39 -0.02 0.18 16 48 H 0.11 -0.74 8.00 -2.39 -0.02 -0.76 16 49 H 0.08 -0.56 7.70 -2.39 -0.02 -0.58 16 50 H 0.13 -1.67 7.19 -2.39 -0.02 -1.68 16 51 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 52 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 53 H 0.11 0.06 5.52 -2.39 -0.01 0.05 16 Total: 0.00 -18.65 378.70 1.00 -17.65 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: 1.07 Total: -2.35 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.64 Total: -6.20 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -0.93 Total: -0.67 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -4.46 Total: -30.06 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 2.17 Total: 2.18 kcal Atomic # 16 Polarization: 20.93 SS G_CDS: -1.48 Total: 19.45 kcal Total: -18.65 1.00 -17.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_15065288.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.863 kcal (2) G-P(sol) polarization free energy of solvation -18.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds