Wall clock time and date at job start Mon Mar 8 2021 11:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86303 * 109.47066 * 2 1 4 4 H 1.48501 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47199 * 300.00109 * 3 2 1 6 6 H 1.48497 * 109.46845 * 60.00019 * 3 2 1 7 7 C 1.50694 * 109.47630 * 120.00097 * 2 1 3 8 8 C 1.38222 * 120.00077 * 289.69532 * 7 2 1 9 9 C 1.38258 * 119.99996 * 180.27044 * 8 7 2 10 10 C 1.38216 * 120.00071 * 359.74555 * 9 8 7 11 11 C 1.38256 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.38217 * 120.00245 * 0.02562 * 11 10 9 13 13 S 1.76195 * 120.00208 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40396 * 355.43201 * 13 12 11 15 15 O 1.42105 * 106.40106 * 222.51066 * 13 12 11 16 16 N 1.65598 * 107.21876 * 108.97273 * 13 12 11 17 17 C 1.46095 * 122.76846 * 88.01609 * 16 13 12 18 18 C 1.46010 * 114.87320 * 78.25884 * 17 16 13 19 19 C 1.56527 * 108.96444 * 60.18069 * 18 17 16 20 20 Si 1.83376 * 108.23729 * 291.78702 * 19 18 17 21 21 C 1.88362 * 111.34109 * 322.41807 * 20 19 18 22 22 C 1.56243 * 99.08481 * 221.44631 * 21 20 19 23 23 C 1.53718 * 109.68287 * 39.78191 * 22 21 20 24 24 C 1.55536 * 111.35386 * 311.78518 * 23 22 21 25 25 C 1.87773 * 113.96976 * 86.63899 * 20 19 18 26 26 C 1.44799 * 122.76560 * 267.72406 * 16 13 12 27 27 H 0.96702 * 114.00132 * 299.99794 * 1 2 3 28 28 H 1.09003 * 109.46990 * 240.00318 * 2 1 3 29 29 H 1.08003 * 119.99712 * 0.04047 * 8 7 2 30 30 H 1.07997 * 119.99760 * 179.76707 * 9 8 7 31 31 H 1.08000 * 120.00090 * 179.97438 * 10 9 8 32 32 H 1.07999 * 120.00150 * 180.02562 * 11 10 9 33 33 H 1.08999 * 108.40078 * 199.65846 * 17 16 13 34 34 H 1.09003 * 108.40018 * 317.03568 * 17 16 13 35 35 H 1.08999 * 109.55408 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.55442 * 300.23428 * 18 17 16 37 37 H 1.09008 * 109.71056 * 51.47267 * 19 18 17 38 38 H 1.09000 * 109.71101 * 172.05207 * 19 18 17 39 39 H 1.08995 * 111.47783 * 338.92020 * 21 20 19 40 40 H 1.09001 * 111.46827 * 103.98298 * 21 20 19 41 41 H 1.09002 * 109.44187 * 279.70299 * 22 21 20 42 42 H 1.09004 * 109.39109 * 159.81541 * 22 21 20 43 43 H 1.09003 * 109.11156 * 191.29098 * 23 22 21 44 44 H 1.08993 * 109.03337 * 72.22873 * 23 22 21 45 45 H 1.09000 * 111.11218 * 270.25426 * 24 23 22 46 46 H 1.09000 * 111.14364 * 146.14257 * 24 23 22 47 47 H 1.08991 * 110.13826 * 80.06030 * 25 20 19 48 48 H 1.09000 * 110.13331 * 201.81644 * 25 20 19 49 49 H 1.08997 * 110.04063 * 50.87009 * 26 16 13 50 50 H 1.09005 * 110.04064 * 172.37435 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5350 1.7566 -0.0006 5 1 1.5549 2.4565 -1.2125 6 1 1.5549 2.4564 1.2125 7 6 1.9314 -0.7104 1.2304 8 6 1.7815 -0.1274 2.4746 9 6 2.2475 -0.7767 3.6029 10 6 2.8585 -2.0110 3.4871 11 6 3.0033 -2.5967 2.2431 12 6 2.5375 -1.9478 1.1152 13 16 2.7225 -2.6939 -0.4702 14 8 3.4722 -3.8841 -0.2685 15 8 3.1297 -1.6595 -1.3554 16 7 1.2160 -3.1688 -0.9673 17 6 0.3118 -2.2878 -1.7026 18 6 0.6177 -2.1405 -3.1226 19 6 0.5397 -3.5454 -3.8083 20 14 1.9252 -4.5687 -3.1791 21 6 3.4846 -3.5394 -2.9409 22 6 4.5358 -4.5510 -3.5002 23 6 3.9646 -5.2592 -4.7392 24 6 2.5267 -5.7902 -4.4754 25 6 1.5357 -5.4839 -1.5865 26 6 0.6888 -4.4935 -0.7146 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.3037 0.8369 2.5651 30 1 2.1337 -0.3194 4.5746 31 1 3.2229 -2.5180 4.3684 32 1 3.4804 -3.5614 2.1527 33 1 -0.7015 -2.6780 -1.6075 34 1 0.3434 -1.3004 -1.2419 35 1 -0.1061 -1.4686 -3.5839 36 1 1.6212 -1.7312 -3.2390 37 1 -0.4098 -4.0217 -3.5635 38 1 0.6263 -3.4324 -4.8889 39 1 3.4545 -2.6260 -3.5349 40 1 3.6617 -3.3214 -1.8877 41 1 4.7700 -5.2910 -2.7349 42 1 5.4437 -4.0143 -3.7756 43 1 4.6116 -6.0964 -5.0016 44 1 3.9380 -4.5549 -5.5705 45 1 2.5496 -6.8049 -4.0781 46 1 1.9167 -5.7379 -5.3773 47 1 0.9579 -6.3826 -1.8018 48 1 2.4585 -5.7448 -1.0684 49 1 0.7937 -4.7421 0.3415 50 1 -0.3599 -4.5405 -1.0082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607860_2726874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:39:52 Heat of formation + Delta-G solvation = -52.803016 kcal Electronic energy + Delta-G solvation = -33152.109916 eV Core-core repulsion = 29204.127348 eV Total energy + Delta-G solvation = -3947.982568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.139 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.86818 -39.32559 -38.53243 -37.63188 -37.51067 -35.89553 -34.04994 -32.97916 -32.44572 -30.35686 -29.61652 -27.27648 -26.61596 -25.16962 -24.51785 -23.56854 -22.89483 -22.53149 -20.99268 -20.06022 -19.26953 -18.78214 -17.84269 -17.46814 -17.22614 -16.79358 -16.30232 -15.94742 -15.92602 -15.70461 -15.52498 -15.34972 -15.17185 -14.83447 -14.76606 -14.43525 -14.27495 -14.13300 -13.91656 -13.71859 -13.51920 -13.28113 -13.14418 -13.00469 -12.91612 -12.65237 -12.48759 -12.41451 -12.36426 -12.24796 -12.08010 -11.91224 -11.76927 -11.73356 -11.40335 -11.18245 -11.02670 -10.79774 -10.57604 -10.47187 -10.37792 -10.10683 -9.97325 -9.89334 -0.72704 -0.33690 0.02703 1.02797 1.34665 1.51120 1.68398 1.78679 1.89362 1.92224 2.05008 2.35349 2.70931 2.74024 3.09679 3.17297 3.36446 3.66173 3.76856 3.80265 4.00976 4.08844 4.13647 4.16918 4.23399 4.28449 4.38753 4.40974 4.46374 4.49036 4.55562 4.66053 4.71058 4.72844 4.75566 4.81280 4.89808 4.91549 4.96811 5.01943 5.05151 5.06042 5.17509 5.20035 5.26286 5.30691 5.36463 5.46308 5.52752 5.56618 5.59428 5.62668 5.63680 5.74275 6.35069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.524 6.524 2 C -0.150 4.150 3 Si 0.956 3.044 4 H -0.242 1.242 5 H -0.238 1.238 6 H -0.249 1.249 7 C -0.011 4.011 8 C -0.148 4.148 9 C -0.055 4.055 10 C -0.137 4.137 11 C -0.019 4.019 12 C -0.674 4.674 13 S 2.712 3.288 14 O -0.942 6.942 15 O -0.945 6.945 16 N -0.994 5.994 17 C 0.088 3.912 18 C -0.142 4.142 19 C -0.405 4.405 20 Si 0.967 3.033 21 C -0.419 4.419 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.402 4.402 25 C -0.433 4.433 26 C 0.131 3.869 27 H 0.375 0.625 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.102 0.898 49 H 0.071 0.929 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 1.119 3.243 5.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.258 4.258 3 Si 0.775 3.225 4 H -0.165 1.165 5 H -0.161 1.161 6 H -0.173 1.173 7 C -0.012 4.012 8 C -0.167 4.167 9 C -0.073 4.073 10 C -0.156 4.156 11 C -0.038 4.038 12 C -0.760 4.760 13 S 2.803 3.197 14 O -0.932 6.932 15 O -0.935 6.935 16 N -0.831 5.831 17 C -0.035 4.035 18 C -0.180 4.180 19 C -0.493 4.493 20 Si 1.160 2.840 21 C -0.504 4.504 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.489 4.489 25 C -0.521 4.521 26 C 0.006 3.994 27 H 0.224 0.776 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.121 0.879 49 H 0.090 0.910 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.177 1.588 2.293 4.227 hybrid contribution -0.353 -0.085 1.325 1.373 sum -3.530 1.503 3.617 5.273 Atomic orbital electron populations 1.86484 1.16044 1.81337 1.49284 1.26123 0.86001 1.13929 0.99752 0.85544 0.81822 0.73265 0.81869 1.16534 1.16096 1.17250 1.19913 0.93155 0.92190 0.95965 1.21245 1.02170 1.01066 0.92170 1.21508 0.92933 0.94048 0.98856 1.21410 1.00208 0.96137 0.97872 1.21086 0.92644 0.98753 0.91292 1.30909 1.15012 1.07001 1.23109 1.02200 0.71896 0.73526 0.72046 1.93569 1.67275 1.45951 1.86373 1.93554 1.79061 1.58696 1.62150 1.57508 1.35835 1.21990 1.67792 1.20561 0.93700 0.96441 0.92829 1.21142 1.04496 0.97281 0.95115 1.26354 1.13214 1.04513 1.05207 0.80148 0.67352 0.68285 0.68199 1.28017 1.15258 1.05231 1.01935 1.21922 0.98724 0.97617 0.97202 1.21807 0.95773 0.99684 0.98144 1.26502 1.01327 1.09196 1.11857 1.27725 1.04942 1.05378 1.14033 1.21514 0.98842 0.79372 0.99665 0.77562 0.82939 0.84555 0.84604 0.84485 0.83541 0.89637 0.87373 0.89591 0.89669 0.90296 0.90142 0.88694 0.93741 0.91370 0.91655 0.91947 0.92056 0.90468 0.90521 0.89612 0.87935 0.91036 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.86 10.58 -35.23 -0.37 0.48 16 2 C -0.15 -0.07 1.62 36.00 0.06 -0.01 16 3 Si 0.96 0.28 26.82 -169.99 -4.56 -4.28 16 4 H -0.24 -0.48 7.11 56.52 0.40 -0.08 16 5 H -0.24 -0.19 7.11 56.52 0.40 0.21 16 6 H -0.25 0.30 6.62 56.52 0.37 0.67 16 7 C -0.01 -0.01 4.70 -104.62 -0.49 -0.50 16 8 C -0.15 0.09 8.53 -39.58 -0.34 -0.24 16 9 C -0.06 0.06 10.05 -39.58 -0.40 -0.33 16 10 C -0.14 0.06 10.05 -39.58 -0.40 -0.33 16 11 C -0.02 -0.02 9.55 -39.58 -0.38 -0.40 16 12 C -0.67 -1.45 5.93 -39.58 -0.23 -1.68 16 13 S 2.71 7.99 2.86 -107.50 -0.31 7.68 16 14 O -0.94 -4.16 12.38 -57.17 -0.71 -4.87 16 15 O -0.94 -3.96 10.72 -57.17 -0.61 -4.57 16 16 N -0.99 -0.51 1.79 -117.36 -0.21 -0.72 16 17 C 0.09 -0.04 4.61 -7.57 -0.03 -0.07 16 18 C -0.14 0.01 5.62 -28.15 -0.16 -0.14 16 19 C -0.41 0.21 4.83 39.06 0.19 0.39 16 20 Si 0.97 0.58 8.58 -169.99 -1.46 -0.88 16 21 C -0.42 -1.44 3.59 38.90 0.14 -1.30 16 22 C -0.12 -0.38 5.96 -24.62 -0.15 -0.53 16 23 C -0.12 -0.24 6.09 -25.01 -0.15 -0.39 16 24 C -0.40 -0.44 5.84 38.51 0.22 -0.21 16 25 C -0.43 -0.11 4.93 39.21 0.19 0.08 16 26 C 0.13 -0.10 6.04 -2.90 -0.02 -0.12 16 27 H 0.37 -1.93 8.53 45.56 0.39 -1.54 16 28 H 0.15 0.21 2.57 -51.92 -0.13 0.08 16 29 H 0.14 -0.42 6.61 -52.48 -0.35 -0.77 16 30 H 0.14 -0.51 8.06 -52.49 -0.42 -0.93 16 31 H 0.14 -0.38 8.06 -52.49 -0.42 -0.81 16 32 H 0.15 0.03 7.34 -52.49 -0.39 -0.36 16 33 H 0.09 -0.18 7.19 -51.93 -0.37 -0.56 16 34 H 0.11 -0.04 2.35 -51.93 -0.12 -0.16 16 35 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 36 H 0.08 0.08 5.25 -51.93 -0.27 -0.20 16 37 H 0.08 -0.13 7.93 -51.92 -0.41 -0.54 16 38 H 0.08 -0.06 7.95 -51.93 -0.41 -0.47 16 39 H 0.09 0.31 6.82 -51.93 -0.35 -0.04 16 40 H 0.05 0.19 1.64 -19.83 -0.03 0.16 16 41 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 45 H 0.08 0.06 8.03 -51.93 -0.42 -0.35 16 46 H 0.08 0.03 8.03 -51.93 -0.42 -0.39 16 47 H 0.09 -0.11 8.00 -51.93 -0.42 -0.53 16 48 H 0.10 0.19 6.58 -51.93 -0.34 -0.16 16 49 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 50 H 0.10 -0.28 7.19 -51.93 -0.37 -0.66 16 LS Contribution 359.47 15.07 5.42 5.42 Total: 0.00 -5.69 359.47 -11.38 -17.07 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -6.63 Total: -9.52 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.94 Total: -5.80 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: -0.21 Total: -0.72 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -1.69 Total: -8.96 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: -6.02 Total: -5.16 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -0.31 Total: 7.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -5.69 -11.38 -17.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_2726874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.730 kcal (2) G-P(sol) polarization free energy of solvation -5.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds