Wall clock time and date at job start Mon Mar 8 2021 11:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86303 * 109.47066 * 2 1 4 4 H 1.48501 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47199 * 300.00109 * 3 2 1 6 6 H 1.48497 * 109.46845 * 60.00019 * 3 2 1 7 7 C 1.50694 * 109.47630 * 120.00097 * 2 1 3 8 8 C 1.38222 * 120.00077 * 289.69532 * 7 2 1 9 9 C 1.38258 * 119.99996 * 180.27044 * 8 7 2 10 10 C 1.38216 * 120.00071 * 359.74555 * 9 8 7 11 11 C 1.38256 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.38217 * 120.00245 * 0.02562 * 11 10 9 13 13 S 1.76195 * 120.00208 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40396 * 355.43201 * 13 12 11 15 15 O 1.42105 * 106.40106 * 222.51066 * 13 12 11 16 16 N 1.65598 * 107.21876 * 108.97273 * 13 12 11 17 17 C 1.46095 * 122.76846 * 88.01609 * 16 13 12 18 18 C 1.46010 * 114.87320 * 78.25884 * 17 16 13 19 19 C 1.56527 * 108.96444 * 60.18069 * 18 17 16 20 20 Si 1.83376 * 108.23729 * 291.78702 * 19 18 17 21 21 C 1.88362 * 111.34109 * 322.41807 * 20 19 18 22 22 C 1.56243 * 99.08481 * 221.44631 * 21 20 19 23 23 C 1.53718 * 109.68287 * 39.78191 * 22 21 20 24 24 C 1.55536 * 111.35386 * 311.78518 * 23 22 21 25 25 C 1.87773 * 113.96976 * 86.63899 * 20 19 18 26 26 C 1.44799 * 122.76560 * 267.72406 * 16 13 12 27 27 H 0.96702 * 114.00132 * 299.99794 * 1 2 3 28 28 H 1.09003 * 109.46990 * 240.00318 * 2 1 3 29 29 H 1.08003 * 119.99712 * 0.04047 * 8 7 2 30 30 H 1.07997 * 119.99760 * 179.76707 * 9 8 7 31 31 H 1.08000 * 120.00090 * 179.97438 * 10 9 8 32 32 H 1.07999 * 120.00150 * 180.02562 * 11 10 9 33 33 H 1.08999 * 108.40078 * 199.65846 * 17 16 13 34 34 H 1.09003 * 108.40018 * 317.03568 * 17 16 13 35 35 H 1.08999 * 109.55408 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.55442 * 300.23428 * 18 17 16 37 37 H 1.09008 * 109.71056 * 51.47267 * 19 18 17 38 38 H 1.09000 * 109.71101 * 172.05207 * 19 18 17 39 39 H 1.08995 * 111.47783 * 338.92020 * 21 20 19 40 40 H 1.09001 * 111.46827 * 103.98298 * 21 20 19 41 41 H 1.09002 * 109.44187 * 279.70299 * 22 21 20 42 42 H 1.09004 * 109.39109 * 159.81541 * 22 21 20 43 43 H 1.09003 * 109.11156 * 191.29098 * 23 22 21 44 44 H 1.08993 * 109.03337 * 72.22873 * 23 22 21 45 45 H 1.09000 * 111.11218 * 270.25426 * 24 23 22 46 46 H 1.09000 * 111.14364 * 146.14257 * 24 23 22 47 47 H 1.08991 * 110.13826 * 80.06030 * 25 20 19 48 48 H 1.09000 * 110.13331 * 201.81644 * 25 20 19 49 49 H 1.08997 * 110.04063 * 50.87009 * 26 16 13 50 50 H 1.09005 * 110.04064 * 172.37435 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5350 1.7566 -0.0006 5 1 1.5549 2.4565 -1.2125 6 1 1.5549 2.4564 1.2125 7 6 1.9314 -0.7104 1.2304 8 6 1.7815 -0.1274 2.4746 9 6 2.2475 -0.7767 3.6029 10 6 2.8585 -2.0110 3.4871 11 6 3.0033 -2.5967 2.2431 12 6 2.5375 -1.9478 1.1152 13 16 2.7225 -2.6939 -0.4702 14 8 3.4722 -3.8841 -0.2685 15 8 3.1297 -1.6595 -1.3554 16 7 1.2160 -3.1688 -0.9673 17 6 0.3118 -2.2878 -1.7026 18 6 0.6177 -2.1405 -3.1226 19 6 0.5397 -3.5454 -3.8083 20 14 1.9252 -4.5687 -3.1791 21 6 3.4846 -3.5394 -2.9409 22 6 4.5358 -4.5510 -3.5002 23 6 3.9646 -5.2592 -4.7392 24 6 2.5267 -5.7902 -4.4754 25 6 1.5357 -5.4839 -1.5865 26 6 0.6888 -4.4935 -0.7146 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.3037 0.8369 2.5651 30 1 2.1337 -0.3194 4.5746 31 1 3.2229 -2.5180 4.3684 32 1 3.4804 -3.5614 2.1527 33 1 -0.7015 -2.6780 -1.6075 34 1 0.3434 -1.3004 -1.2419 35 1 -0.1061 -1.4686 -3.5839 36 1 1.6212 -1.7312 -3.2390 37 1 -0.4098 -4.0217 -3.5635 38 1 0.6263 -3.4324 -4.8889 39 1 3.4545 -2.6260 -3.5349 40 1 3.6617 -3.3214 -1.8877 41 1 4.7700 -5.2910 -2.7349 42 1 5.4437 -4.0143 -3.7756 43 1 4.6116 -6.0964 -5.0016 44 1 3.9380 -4.5549 -5.5705 45 1 2.5496 -6.8049 -4.0781 46 1 1.9167 -5.7379 -5.3773 47 1 0.9579 -6.3826 -1.8018 48 1 2.4585 -5.7448 -1.0684 49 1 0.7937 -4.7421 0.3415 50 1 -0.3599 -4.5405 -1.0082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607860_2726874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:39:51 Heat of formation + Delta-G solvation = -46.251099 kcal Electronic energy + Delta-G solvation = -33151.825804 eV Core-core repulsion = 29204.127348 eV Total energy + Delta-G solvation = -3947.698456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.139 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.81058 -39.29910 -38.67089 -37.71471 -37.56113 -36.09597 -33.99988 -32.91457 -32.39668 -30.33241 -29.77498 -27.22541 -26.57001 -25.29728 -24.50166 -23.56993 -22.85244 -22.51173 -21.16532 -20.13869 -19.25058 -18.85601 -17.80636 -17.51432 -17.18818 -16.76020 -16.30179 -16.01801 -15.92656 -15.80651 -15.58042 -15.40242 -15.16419 -14.78256 -14.74671 -14.44200 -14.34455 -14.15798 -13.93788 -13.73133 -13.52166 -13.34345 -13.27394 -13.01565 -12.96533 -12.69158 -12.54429 -12.51033 -12.40683 -12.24578 -12.12611 -12.00269 -11.78423 -11.74691 -11.47855 -11.27847 -11.13251 -10.73739 -10.55654 -10.47146 -10.42119 -10.17339 -9.93101 -9.92051 -0.81638 -0.34757 0.07257 1.02178 1.31867 1.46431 1.58505 1.74366 1.87556 1.88831 2.07753 2.38609 2.63242 2.66968 3.07704 3.24267 3.42499 3.72306 3.87134 3.91187 3.99382 4.06477 4.11924 4.17122 4.21545 4.23765 4.26217 4.43798 4.47873 4.52638 4.55529 4.62292 4.65208 4.75860 4.79656 4.83070 4.83906 4.95568 4.97519 5.03238 5.06619 5.09285 5.13705 5.17334 5.24419 5.24911 5.27309 5.39085 5.45171 5.46515 5.58634 5.60995 5.71074 5.72669 6.68491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.523 6.523 2 C -0.147 4.147 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.250 1.250 6 H -0.214 1.214 7 C -0.023 4.023 8 C -0.150 4.150 9 C -0.054 4.054 10 C -0.142 4.142 11 C -0.040 4.040 12 C -0.692 4.692 13 S 2.710 3.290 14 O -0.969 6.969 15 O -0.969 6.969 16 N -0.989 5.989 17 C 0.080 3.920 18 C -0.147 4.147 19 C -0.399 4.399 20 Si 0.999 3.001 21 C -0.452 4.452 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.409 4.409 25 C -0.439 4.439 26 C 0.124 3.876 27 H 0.392 0.608 28 H 0.140 0.860 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 1.459 4.351 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.173 1.173 6 H -0.136 1.136 7 C -0.025 4.025 8 C -0.169 4.169 9 C -0.072 4.072 10 C -0.161 4.161 11 C -0.059 4.059 12 C -0.780 4.780 13 S 2.804 3.196 14 O -0.960 6.960 15 O -0.959 6.959 16 N -0.827 5.827 17 C -0.043 4.043 18 C -0.186 4.186 19 C -0.488 4.488 20 Si 1.190 2.810 21 C -0.534 4.534 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.495 4.495 25 C -0.527 4.527 26 C -0.001 4.001 27 H 0.244 0.756 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.124 0.876 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.102 1.938 3.408 7.253 hybrid contribution 0.658 -0.146 1.013 1.217 sum -5.443 1.792 4.422 7.238 Atomic orbital electron populations 1.86448 1.14714 1.81679 1.50404 1.25973 0.87063 1.13382 0.99157 0.85457 0.79411 0.73655 0.82873 1.20353 1.17305 1.13588 1.20103 0.93440 0.91966 0.96993 1.21618 1.01748 1.02015 0.91496 1.21938 0.91610 0.93530 1.00129 1.21738 0.99882 0.96666 0.97786 1.21246 0.93471 0.99142 0.92073 1.30806 1.16539 1.08031 1.22650 1.01909 0.72531 0.72900 0.72287 1.93524 1.68664 1.46954 1.86818 1.93523 1.80020 1.59191 1.63168 1.57335 1.35053 1.22630 1.67686 1.20751 0.94549 0.96620 0.92401 1.21196 1.03905 0.97809 0.95693 1.26248 1.13356 1.03806 1.05353 0.79826 0.66023 0.67093 0.68060 1.28386 1.18380 1.05515 1.01086 1.21977 0.98784 0.97609 0.97718 1.21818 0.96792 0.99690 0.97385 1.26598 1.00508 1.09572 1.12836 1.27740 1.04678 1.06596 1.13701 1.21775 1.00160 0.78252 0.99896 0.75594 0.84331 0.81832 0.81501 0.82366 0.83875 0.86957 0.87493 0.88145 0.91594 0.87967 0.89665 0.89662 0.94786 0.92295 0.92687 0.91854 0.91730 0.90135 0.89296 0.87573 0.90153 0.90675 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 2.21 10.58 -148.98 -1.58 0.64 16 2 C -0.15 -0.19 1.62 71.23 0.12 -0.07 16 3 Si 0.97 0.93 26.82 68.60 1.84 2.77 16 4 H -0.28 -1.85 7.11 99.48 0.71 -1.15 16 5 H -0.25 -0.62 7.11 99.48 0.71 0.08 16 6 H -0.21 1.01 6.62 99.48 0.66 1.67 16 7 C -0.02 -0.05 4.70 -19.86 -0.09 -0.15 16 8 C -0.15 0.39 8.53 22.27 0.19 0.58 16 9 C -0.05 0.21 10.05 22.27 0.22 0.44 16 10 C -0.14 0.18 10.05 22.27 0.22 0.40 16 11 C -0.04 -0.15 9.55 22.27 0.21 0.06 16 12 C -0.69 -4.03 5.93 22.27 0.13 -3.89 16 13 S 2.71 22.51 2.86 -56.49 -0.16 22.35 16 14 O -0.97 -11.91 12.38 -128.00 -1.58 -13.49 16 15 O -0.97 -11.43 10.72 -128.00 -1.37 -12.80 16 16 N -0.99 -1.49 1.79 -525.22 -0.94 -2.43 16 17 C 0.08 -0.11 4.61 84.31 0.39 0.28 16 18 C -0.15 0.06 5.62 29.68 0.17 0.22 16 19 C -0.40 0.87 4.83 73.21 0.35 1.22 16 20 Si 1.00 1.76 8.58 68.60 0.59 2.35 16 21 C -0.45 -4.53 3.59 73.11 0.26 -4.27 16 22 C -0.12 -1.22 5.96 31.96 0.19 -1.03 16 23 C -0.12 -0.70 6.09 31.71 0.19 -0.51 16 24 C -0.41 -1.03 5.84 72.86 0.43 -0.61 16 25 C -0.44 -0.34 4.93 73.31 0.36 0.02 16 26 C 0.12 -0.26 6.04 88.02 0.53 0.28 16 27 H 0.39 -4.78 8.53 -74.06 -0.63 -5.41 16 28 H 0.14 0.62 2.57 -2.40 -0.01 0.61 16 29 H 0.16 -1.47 6.61 -2.91 -0.02 -1.49 16 30 H 0.17 -1.76 8.06 -2.91 -0.02 -1.78 16 31 H 0.16 -1.02 8.06 -2.91 -0.02 -1.05 16 32 H 0.14 0.44 7.34 -2.91 -0.02 0.42 16 33 H 0.11 -0.77 7.19 -2.39 -0.02 -0.79 16 34 H 0.11 -0.10 2.35 -2.39 -0.01 -0.10 16 35 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.07 0.24 5.25 -2.39 -0.01 0.23 16 37 H 0.10 -0.65 7.93 -2.38 -0.02 -0.67 16 38 H 0.08 -0.23 7.95 -2.39 -0.02 -0.25 16 39 H 0.08 0.90 6.82 -2.39 -0.02 0.89 16 40 H 0.03 0.43 1.64 -45.94 -0.08 0.35 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.08 0.14 8.03 -2.39 -0.02 0.13 16 46 H 0.09 0.01 8.03 -2.39 -0.02 -0.01 16 47 H 0.11 -0.39 8.00 -2.39 -0.02 -0.41 16 48 H 0.08 0.46 6.58 -2.39 -0.02 0.44 16 49 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 50 H 0.13 -1.10 7.19 -2.38 -0.02 -1.12 16 Total: 0.00 -17.53 359.47 1.65 -15.88 By element: Atomic # 1 Polarization: -9.21 SS G_CDS: 0.97 Total: -8.23 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 3.88 Total: -7.03 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -0.94 Total: -2.43 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -4.53 Total: -25.66 kcal Atomic # 14 Polarization: 2.70 SS G_CDS: 2.43 Total: 5.12 kcal Atomic # 16 Polarization: 22.51 SS G_CDS: -0.16 Total: 22.35 kcal Total: -17.53 1.65 -15.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607860_2726874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.369 kcal (2) G-P(sol) polarization free energy of solvation -17.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds