Wall clock time and date at job start Mon Mar 8 2021 12:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 C 1.52992 * 109.46876 * 120.00381 * 2 1 3 5 5 H 1.09000 * 109.47466 * 299.99901 * 4 2 1 6 6 C 1.53000 * 109.47631 * 60.00023 * 4 2 1 7 7 C 1.52997 * 109.47323 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46939 * 299.99827 * 7 6 4 9 9 H 1.08998 * 109.47083 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47285 * 299.99947 * 8 7 6 11 11 S 1.65599 * 120.00418 * 215.00047 * 10 8 7 12 12 O 1.42100 * 106.40241 * 311.46108 * 11 10 8 13 13 O 1.42096 * 106.40379 * 178.53729 * 11 10 8 14 14 C 1.76199 * 107.21658 * 65.00023 * 11 10 8 15 15 C 1.38238 * 120.00251 * 269.72679 * 14 11 10 16 16 C 1.38238 * 120.00111 * 179.78510 * 15 14 11 17 17 C 1.38229 * 119.99700 * 0.46904 * 16 15 14 18 18 C 1.50706 * 119.99458 * 179.78524 * 17 16 15 19 19 O 1.42904 * 109.46684 * 119.97933 * 18 17 16 20 20 Si 1.86295 * 109.47317 * 359.97438 * 18 17 16 21 21 C 1.38237 * 120.00404 * 359.76549 * 17 16 15 22 22 C 1.38234 * 120.00019 * 90.00010 * 14 11 10 23 23 C 1.52992 * 109.47374 * 60.00136 * 8 7 6 24 24 C 1.53001 * 109.46876 * 179.97438 * 4 2 1 25 25 H 1.08999 * 109.47412 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46926 * 299.99971 * 1 2 3 27 27 H 1.09003 * 109.47171 * 60.00033 * 1 2 3 28 28 H 1.08998 * 109.46926 * 240.00029 * 2 1 3 29 29 H 1.09002 * 109.46834 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47578 * 300.00139 * 3 2 1 31 31 H 1.09000 * 109.46795 * 60.00452 * 3 2 1 32 32 H 1.08998 * 109.47271 * 59.99678 * 6 4 2 33 33 H 1.09002 * 109.46834 * 300.00259 * 6 4 2 34 34 H 1.08999 * 109.47137 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47301 * 59.99584 * 7 6 4 36 36 H 0.97001 * 119.99713 * 35.00253 * 10 8 7 37 37 H 1.08004 * 119.99572 * 0.02562 * 15 14 11 38 38 H 1.07999 * 119.99919 * 180.25463 * 16 15 14 39 39 H 1.09004 * 109.47028 * 239.97218 * 18 17 16 40 40 H 0.96703 * 114.00043 * 299.99714 * 19 18 17 41 41 H 1.48501 * 109.99801 * 179.97438 * 20 18 17 42 42 H 1.48503 * 110.00011 * 301.31825 * 20 18 17 43 43 H 1.07996 * 119.99812 * 180.02562 * 21 17 16 44 44 H 1.07999 * 120.00005 * 359.97438 * 22 14 11 45 45 H 1.09004 * 109.47109 * 59.99594 * 23 8 7 46 46 H 1.09004 * 109.47645 * 179.97438 * 23 8 7 47 47 H 1.08996 * 109.47659 * 299.99569 * 24 4 2 48 48 H 1.09005 * 109.47479 * 60.00244 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.6766 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 2.0394 -2.8849 2.4987 8 6 3.5694 -2.8849 2.4993 9 1 3.9324 -3.3990 3.3892 10 7 4.0583 -3.5757 1.3034 11 16 5.4418 -4.4826 1.3784 12 8 6.4173 -3.6740 2.0218 13 8 5.6259 -5.0414 0.0850 14 6 5.1216 -5.8337 2.4631 15 6 5.3803 -5.7108 3.8154 16 6 5.1249 -6.7693 4.6671 17 6 4.6199 -7.9540 4.1649 18 6 4.3460 -9.1097 5.0926 19 8 2.9597 -9.4511 5.0318 20 14 4.7905 -8.6254 6.8358 21 6 4.3657 -8.0787 2.8118 22 6 4.6170 -7.0186 1.9609 23 6 4.0795 -1.4425 2.4993 24 6 3.5699 -0.7219 1.2488 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.8933 -2.6776 0.3592 33 1 0.4399 -2.1638 1.2491 34 1 1.6765 -3.9127 2.4984 35 1 1.6758 -2.3709 3.3884 36 1 3.5715 -3.5018 0.4677 37 1 5.7783 -4.7864 4.2072 38 1 5.3231 -6.6719 5.7242 39 1 4.9453 -9.9684 4.7900 40 1 2.3660 -8.7322 5.2884 41 1 4.5244 -9.7565 7.7606 42 1 6.2223 -8.2376 6.9058 43 1 3.9708 -9.0042 2.4196 44 1 4.4186 -7.1161 0.9037 45 1 3.7157 -0.9285 3.3891 46 1 5.1695 -1.4424 2.5002 47 1 3.9330 -1.2359 0.3589 48 1 3.9337 0.3057 1.2487 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623132_13421422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:11 Heat of formation + Delta-G solvation = -98.626078 kcal Electronic energy + Delta-G solvation = -28795.524762 eV Core-core repulsion = 24942.912781 eV Total energy + Delta-G solvation = -3852.611981 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.154 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.79012 -40.65155 -38.22888 -37.82013 -37.01548 -36.82392 -33.32683 -33.07069 -32.28182 -31.97231 -29.56691 -28.08751 -27.31102 -24.26885 -24.00268 -23.42803 -23.05996 -21.26908 -20.90940 -20.23249 -19.15976 -18.74455 -18.23359 -17.33260 -16.87178 -16.64919 -16.47050 -16.12351 -15.89767 -15.56674 -15.38998 -15.32740 -14.94840 -14.85263 -14.53199 -14.45855 -14.28989 -14.02171 -13.92835 -13.63985 -13.49147 -13.17318 -13.07619 -13.00930 -12.71672 -12.70813 -12.59898 -12.45777 -12.39042 -12.12873 -12.08591 -11.99883 -11.83644 -11.75868 -11.38289 -11.19035 -10.90632 -10.77157 -10.45537 -10.37875 -10.22430 -5.19732 -0.70428 -0.39299 0.10670 1.09405 1.48681 1.83114 1.89455 2.29399 2.74721 3.21771 3.25782 3.37939 3.51414 3.60634 3.64828 3.69614 3.73192 3.94131 4.00093 4.05183 4.07621 4.20736 4.24654 4.26513 4.31882 4.35328 4.49165 4.50876 4.53122 4.59987 4.69406 4.72085 4.73191 4.74994 4.86627 4.90592 4.90955 4.94824 5.02491 5.06155 5.10524 5.13197 5.16027 5.18346 5.25301 5.31815 5.38488 5.48758 5.55897 5.61342 5.90076 6.35430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.084 4.084 5 H 0.072 0.928 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.155 3.845 9 H 0.083 0.917 10 N -1.108 6.108 11 S 2.692 3.308 12 O -0.951 6.951 13 O -0.958 6.958 14 C -0.674 4.674 15 C -0.017 4.017 16 C -0.139 4.139 17 C -0.063 4.063 18 C -0.078 4.078 19 O -0.535 6.535 20 Si 0.691 3.309 21 C -0.114 4.114 22 C -0.016 4.016 23 C -0.140 4.140 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.419 0.581 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.380 0.620 41 H -0.251 1.251 42 H -0.255 1.255 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 2.252 3.143 6.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.091 0.909 6 C -0.155 4.155 7 C -0.163 4.163 8 C 0.048 3.952 9 H 0.101 0.899 10 N -0.869 5.869 11 S 2.781 3.219 12 O -0.941 6.941 13 O -0.948 6.948 14 C -0.761 4.761 15 C -0.036 4.036 16 C -0.157 4.157 17 C -0.064 4.064 18 C -0.188 4.188 19 O -0.341 6.341 20 Si 0.592 3.408 21 C -0.133 4.133 22 C -0.036 4.036 23 C -0.179 4.179 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.255 0.745 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.228 0.772 41 H -0.176 1.176 42 H -0.180 1.180 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.503 1.651 3.395 5.150 hybrid contribution -0.415 -0.757 -0.491 0.993 sum -3.918 0.894 2.904 4.958 Atomic orbital electron populations 1.21906 0.95275 1.01800 1.01773 1.21150 0.95700 0.96265 0.98054 1.21906 1.01266 0.95895 1.01746 1.21251 0.95321 0.95409 0.98236 0.90943 1.21647 1.00905 0.95295 0.97697 1.21823 0.93670 1.01420 0.99435 1.20802 0.95254 0.93225 0.85877 0.89860 1.55665 1.47519 1.64441 1.19319 1.02019 0.73078 0.73346 0.73486 1.93610 1.56448 1.66835 1.77168 1.93614 1.84483 1.78983 1.37700 1.31047 1.16709 1.17833 1.10477 1.20927 0.92419 0.99190 0.91095 1.21165 1.01354 0.93238 0.99951 1.20743 0.95198 0.95042 0.95432 1.25236 0.86918 0.98292 1.08394 1.86539 1.14246 1.41837 1.91437 0.94709 0.84012 0.86248 0.75805 1.21187 0.99948 0.99539 0.92578 1.20999 0.91198 0.90942 1.00414 1.22086 1.02102 0.94633 0.99048 1.21625 0.94897 1.00726 0.98118 0.92421 0.92722 0.92831 0.91309 0.92319 0.92825 0.92720 0.91989 0.91133 0.91114 0.90326 0.74456 0.83696 0.84583 0.86257 0.77214 1.17573 1.17979 0.84504 0.83938 0.90646 0.90215 0.91840 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.24 8.84 37.16 0.33 0.57 16 2 C -0.09 0.15 2.51 -90.62 -0.23 -0.08 16 3 C -0.15 0.18 8.84 37.16 0.33 0.51 16 4 C -0.08 0.19 1.78 -90.62 -0.16 0.03 16 5 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 6 C -0.12 0.35 4.66 -26.73 -0.12 0.22 16 7 C -0.12 0.44 5.63 -26.73 -0.15 0.29 16 8 C 0.16 -0.41 2.98 -67.93 -0.20 -0.61 16 9 H 0.08 -0.31 7.24 -51.93 -0.38 -0.69 16 10 N -1.11 2.00 4.74 -4.89 -0.02 1.98 16 11 S 2.69 2.82 5.65 -107.50 -0.61 2.22 16 12 O -0.95 -3.38 16.54 -57.17 -0.95 -4.33 16 13 O -0.96 -3.98 17.28 -57.17 -0.99 -4.97 16 14 C -0.67 -0.15 5.81 -39.58 -0.23 -0.38 16 15 C -0.02 0.01 8.92 -39.58 -0.35 -0.34 16 16 C -0.14 0.18 8.67 -39.58 -0.34 -0.17 16 17 C -0.06 0.05 5.39 -104.62 -0.56 -0.51 16 18 C -0.08 0.10 2.82 36.01 0.10 0.20 16 19 O -0.54 0.56 12.77 -35.23 -0.45 0.11 16 20 Si 0.69 -1.43 29.79 -169.99 -5.06 -6.49 16 21 C -0.11 0.02 9.61 -39.58 -0.38 -0.36 16 22 C -0.02 0.00 9.52 -39.58 -0.38 -0.38 16 23 C -0.14 0.25 5.64 -26.70 -0.15 0.09 16 24 C -0.12 0.19 4.69 -26.70 -0.13 0.06 16 25 H 0.06 -0.11 6.43 -51.93 -0.33 -0.45 16 26 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 27 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 28 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 29 H 0.06 -0.07 6.43 -51.93 -0.33 -0.40 16 30 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 32 H 0.06 -0.19 6.51 -51.93 -0.34 -0.52 16 33 H 0.07 -0.20 6.43 -51.93 -0.33 -0.54 16 34 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 35 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 36 H 0.42 -1.20 6.81 -34.47 -0.23 -1.44 16 37 H 0.15 -0.31 7.61 -52.48 -0.40 -0.71 16 38 H 0.14 -0.46 4.88 -52.49 -0.26 -0.71 16 39 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 40 H 0.38 -1.91 8.70 45.56 0.40 -1.51 16 41 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 42 H -0.26 -0.09 7.11 56.52 0.40 0.31 16 43 H 0.14 -0.14 8.06 -52.49 -0.42 -0.56 16 44 H 0.14 -0.12 7.62 -52.49 -0.40 -0.52 16 45 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 46 H 0.08 -0.02 7.64 -51.93 -0.40 -0.41 16 47 H 0.06 -0.07 7.44 -51.93 -0.39 -0.46 16 48 H 0.07 -0.09 6.43 -51.93 -0.33 -0.42 16 LS Contribution 376.78 15.07 5.68 5.68 Total: 0.00 -8.60 376.78 -12.60 -21.20 By element: Atomic # 1 Polarization: -6.98 SS G_CDS: -7.57 Total: -14.55 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.63 Total: -0.84 kcal Atomic # 7 Polarization: 2.00 SS G_CDS: -0.02 Total: 1.98 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -2.38 Total: -9.19 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: -5.06 Total: -6.49 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -0.61 Total: 2.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -8.60 -12.60 -21.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_13421422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.425 kcal (2) G-P(sol) polarization free energy of solvation -8.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds