Wall clock time and date at job start Mon Mar 8 2021 12:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 C 1.52992 * 109.46876 * 120.00381 * 2 1 3 5 5 H 1.09000 * 109.47466 * 299.99901 * 4 2 1 6 6 C 1.53000 * 109.47631 * 60.00023 * 4 2 1 7 7 C 1.52997 * 109.47323 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46939 * 299.99827 * 7 6 4 9 9 H 1.08998 * 109.47083 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47285 * 299.99947 * 8 7 6 11 11 S 1.65599 * 120.00418 * 215.00047 * 10 8 7 12 12 O 1.42100 * 106.40241 * 311.46108 * 11 10 8 13 13 O 1.42096 * 106.40379 * 178.53729 * 11 10 8 14 14 C 1.76199 * 107.21658 * 65.00023 * 11 10 8 15 15 C 1.38238 * 120.00251 * 269.72679 * 14 11 10 16 16 C 1.38238 * 120.00111 * 179.78510 * 15 14 11 17 17 C 1.38229 * 119.99700 * 0.46904 * 16 15 14 18 18 C 1.50706 * 119.99458 * 179.78524 * 17 16 15 19 19 O 1.42904 * 109.46684 * 119.97933 * 18 17 16 20 20 Si 1.86295 * 109.47317 * 359.97438 * 18 17 16 21 21 C 1.38237 * 120.00404 * 359.76549 * 17 16 15 22 22 C 1.38234 * 120.00019 * 90.00010 * 14 11 10 23 23 C 1.52992 * 109.47374 * 60.00136 * 8 7 6 24 24 C 1.53001 * 109.46876 * 179.97438 * 4 2 1 25 25 H 1.08999 * 109.47412 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46926 * 299.99971 * 1 2 3 27 27 H 1.09003 * 109.47171 * 60.00033 * 1 2 3 28 28 H 1.08998 * 109.46926 * 240.00029 * 2 1 3 29 29 H 1.09002 * 109.46834 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47578 * 300.00139 * 3 2 1 31 31 H 1.09000 * 109.46795 * 60.00452 * 3 2 1 32 32 H 1.08998 * 109.47271 * 59.99678 * 6 4 2 33 33 H 1.09002 * 109.46834 * 300.00259 * 6 4 2 34 34 H 1.08999 * 109.47137 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47301 * 59.99584 * 7 6 4 36 36 H 0.97001 * 119.99713 * 35.00253 * 10 8 7 37 37 H 1.08004 * 119.99572 * 0.02562 * 15 14 11 38 38 H 1.07999 * 119.99919 * 180.25463 * 16 15 14 39 39 H 1.09004 * 109.47028 * 239.97218 * 18 17 16 40 40 H 0.96703 * 114.00043 * 299.99714 * 19 18 17 41 41 H 1.48501 * 109.99801 * 179.97438 * 20 18 17 42 42 H 1.48503 * 110.00011 * 301.31825 * 20 18 17 43 43 H 1.07996 * 119.99812 * 180.02562 * 21 17 16 44 44 H 1.07999 * 120.00005 * 359.97438 * 22 14 11 45 45 H 1.09004 * 109.47109 * 59.99594 * 23 8 7 46 46 H 1.09004 * 109.47645 * 179.97438 * 23 8 7 47 47 H 1.08996 * 109.47659 * 299.99569 * 24 4 2 48 48 H 1.09005 * 109.47479 * 60.00244 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.6766 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 2.0394 -2.8849 2.4987 8 6 3.5694 -2.8849 2.4993 9 1 3.9324 -3.3990 3.3892 10 7 4.0583 -3.5757 1.3034 11 16 5.4418 -4.4826 1.3784 12 8 6.4173 -3.6740 2.0218 13 8 5.6259 -5.0414 0.0850 14 6 5.1216 -5.8337 2.4631 15 6 5.3803 -5.7108 3.8154 16 6 5.1249 -6.7693 4.6671 17 6 4.6199 -7.9540 4.1649 18 6 4.3460 -9.1097 5.0926 19 8 2.9597 -9.4511 5.0318 20 14 4.7905 -8.6254 6.8358 21 6 4.3657 -8.0787 2.8118 22 6 4.6170 -7.0186 1.9609 23 6 4.0795 -1.4425 2.4993 24 6 3.5699 -0.7219 1.2488 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.8933 -2.6776 0.3592 33 1 0.4399 -2.1638 1.2491 34 1 1.6765 -3.9127 2.4984 35 1 1.6758 -2.3709 3.3884 36 1 3.5715 -3.5018 0.4677 37 1 5.7783 -4.7864 4.2072 38 1 5.3231 -6.6719 5.7242 39 1 4.9453 -9.9684 4.7900 40 1 2.3660 -8.7322 5.2884 41 1 4.5244 -9.7565 7.7606 42 1 6.2223 -8.2376 6.9058 43 1 3.9708 -9.0042 2.4196 44 1 4.4186 -7.1161 0.9037 45 1 3.7157 -0.9285 3.3891 46 1 5.1695 -1.4424 2.5002 47 1 3.9330 -1.2359 0.3589 48 1 3.9337 0.3057 1.2487 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623132_13421422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:10 Heat of formation + Delta-G solvation = -97.497872 kcal Electronic energy + Delta-G solvation = -28795.475839 eV Core-core repulsion = 24942.912781 eV Total energy + Delta-G solvation = -3852.563058 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.154 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.70806 -40.49266 -38.41055 -37.71191 -37.02507 -36.88607 -33.22185 -33.00133 -32.21031 -31.78124 -29.41345 -27.97340 -27.23870 -24.17368 -23.86780 -23.24138 -23.00394 -21.18482 -20.79566 -20.15506 -19.11064 -18.75092 -18.19415 -17.29852 -16.78903 -16.57319 -16.35175 -16.03854 -15.82943 -15.56615 -15.25774 -15.21604 -14.84537 -14.71078 -14.46846 -14.36749 -14.15922 -13.96885 -13.88308 -13.61694 -13.34049 -13.29030 -13.21188 -13.04184 -12.66322 -12.57124 -12.53081 -12.42492 -12.24181 -12.01152 -11.97633 -11.90915 -11.79432 -11.63120 -11.23316 -11.04272 -10.74645 -10.67966 -10.33628 -10.28780 -10.15958 -5.05401 -0.73429 -0.38918 0.17394 1.22386 1.59572 1.91648 1.93503 2.33178 2.70387 3.21839 3.39668 3.49382 3.70940 3.75107 3.80119 3.82738 3.85044 4.08505 4.17659 4.18301 4.22547 4.30852 4.36153 4.38699 4.46987 4.51786 4.58467 4.69404 4.71616 4.74509 4.82678 4.83721 4.85295 4.88143 4.93505 4.97386 5.05875 5.10555 5.17308 5.22684 5.23393 5.26961 5.32396 5.34771 5.40492 5.44985 5.53205 5.63414 5.68589 5.71105 6.06173 6.69441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.074 0.926 6 C -0.119 4.119 7 C -0.119 4.119 8 C 0.150 3.850 9 H 0.098 0.902 10 N -1.098 6.098 11 S 2.706 3.294 12 O -0.980 6.980 13 O -0.994 6.994 14 C -0.676 4.676 15 C -0.023 4.023 16 C -0.138 4.138 17 C -0.064 4.064 18 C -0.082 4.082 19 O -0.550 6.550 20 Si 0.781 3.219 21 C -0.122 4.122 22 C -0.027 4.027 23 C -0.141 4.141 24 C -0.117 4.117 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.424 0.576 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.113 0.887 40 H 0.398 0.602 41 H -0.298 1.298 42 H -0.284 1.284 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 2.252 4.255 7.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.157 4.157 7 C -0.158 4.158 8 C 0.044 3.956 9 H 0.116 0.884 10 N -0.861 5.861 11 S 2.797 3.203 12 O -0.969 6.969 13 O -0.984 6.984 14 C -0.765 4.765 15 C -0.042 4.042 16 C -0.157 4.157 17 C -0.065 4.065 18 C -0.192 4.192 19 O -0.358 6.358 20 Si 0.687 3.313 21 C -0.141 4.141 22 C -0.046 4.046 23 C -0.180 4.180 24 C -0.155 4.155 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.262 0.738 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.130 0.870 40 H 0.248 0.752 41 H -0.226 1.226 42 H -0.211 1.211 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.512 1.689 4.467 6.570 hybrid contribution -0.123 -0.782 -0.808 1.131 sum -4.636 0.906 3.659 5.975 Atomic orbital electron populations 1.21890 0.95082 1.02074 1.01529 1.21147 0.95824 0.95974 0.98242 1.21906 1.01117 0.96241 1.01561 1.21185 0.94620 0.95926 0.97856 0.90735 1.21663 1.01120 0.94748 0.98136 1.21805 0.92546 1.01946 0.99491 1.20995 0.96090 0.92648 0.85856 0.88423 1.55421 1.46666 1.63943 1.20111 1.01287 0.73201 0.73218 0.72602 1.93571 1.58173 1.67714 1.77475 1.93559 1.85380 1.79707 1.39790 1.30839 1.17563 1.17354 1.10709 1.21183 0.92161 1.00092 0.90771 1.21397 1.00601 0.92685 1.00974 1.20853 0.94928 0.95380 0.95297 1.25343 0.87030 0.97891 1.08924 1.86504 1.14502 1.43192 1.91610 0.93700 0.81142 0.83738 0.72752 1.21310 1.00167 0.99631 0.92952 1.21117 0.91554 0.91126 1.00820 1.22093 1.01023 0.95423 0.99428 1.21623 0.95505 1.00366 0.97999 0.91882 0.92653 0.93373 0.91863 0.92565 0.93249 0.92640 0.92072 0.90755 0.90333 0.89193 0.73780 0.82271 0.82482 0.86955 0.75204 1.22625 1.21108 0.84058 0.83629 0.89369 0.91988 0.92623 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.50 8.84 71.98 0.64 1.14 16 2 C -0.09 0.28 2.51 -10.80 -0.03 0.25 16 3 C -0.15 0.29 8.84 71.98 0.64 0.92 16 4 C -0.08 0.37 1.78 -10.80 -0.02 0.35 16 5 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 6 C -0.12 0.80 4.66 30.59 0.14 0.94 16 7 C -0.12 1.01 5.63 30.59 0.17 1.18 16 8 C 0.15 -0.89 2.98 44.99 0.13 -0.75 16 9 H 0.10 -0.84 7.24 -2.39 -0.02 -0.86 16 10 N -1.10 3.70 4.74 -169.40 -0.80 2.89 16 11 S 2.71 7.88 5.65 -56.49 -0.32 7.56 16 12 O -0.98 -7.89 16.54 -128.00 -2.12 -10.00 16 13 O -0.99 -9.69 17.28 -128.00 -2.21 -11.90 16 14 C -0.68 -0.31 5.81 22.27 0.13 -0.18 16 15 C -0.02 0.05 8.92 22.27 0.20 0.25 16 16 C -0.14 0.52 8.67 22.27 0.19 0.72 16 17 C -0.06 0.15 5.39 -19.86 -0.11 0.04 16 18 C -0.08 0.27 2.82 71.24 0.20 0.47 16 19 O -0.55 1.64 12.77 -148.98 -1.90 -0.27 16 20 Si 0.78 -3.78 29.79 68.60 2.04 -1.73 16 21 C -0.12 0.07 9.61 22.27 0.21 0.29 16 22 C -0.03 -0.01 9.52 22.27 0.21 0.20 16 23 C -0.14 0.50 5.64 30.61 0.17 0.68 16 24 C -0.12 0.33 4.69 30.61 0.14 0.47 16 25 H 0.06 -0.28 6.43 -2.39 -0.02 -0.29 16 26 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.06 -0.08 6.43 -2.39 -0.02 -0.10 16 30 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.06 -0.39 6.51 -2.39 -0.02 -0.41 16 33 H 0.07 -0.52 6.43 -2.39 -0.02 -0.53 16 34 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.42 -2.26 6.81 -96.74 -0.66 -2.91 16 37 H 0.16 -0.85 7.61 -2.91 -0.02 -0.87 16 38 H 0.16 -1.35 4.88 -2.91 -0.01 -1.37 16 39 H 0.11 -0.21 7.96 -2.39 -0.02 -0.23 16 40 H 0.40 -4.54 8.70 -74.05 -0.64 -5.19 16 41 H -0.30 -0.93 7.11 99.48 0.71 -0.22 16 42 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 43 H 0.14 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.15 -0.13 7.62 -2.91 -0.02 -0.15 16 45 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 46 H 0.06 0.02 7.64 -2.38 -0.02 0.01 16 47 H 0.06 -0.07 7.44 -2.39 -0.02 -0.09 16 48 H 0.06 -0.12 6.43 -2.38 -0.02 -0.13 16 Total: 0.00 -20.18 376.78 -2.57 -22.76 By element: Atomic # 1 Polarization: -15.98 SS G_CDS: -0.30 Total: -16.27 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 3.03 Total: 6.96 kcal Atomic # 7 Polarization: 3.70 SS G_CDS: -0.80 Total: 2.89 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -6.23 Total: -22.17 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.04 Total: -1.73 kcal Atomic # 16 Polarization: 7.88 SS G_CDS: -0.32 Total: 7.56 kcal Total: -20.18 -2.57 -22.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_13421422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.742 kcal (2) G-P(sol) polarization free energy of solvation -20.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds