Wall clock time and date at job start Mon Mar 8 2021 12:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 5 5 H 1.09002 * 109.47103 * 299.99915 * 4 2 1 6 6 C 1.52997 * 109.47482 * 60.00162 * 4 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 4 9 9 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.47042 * 300.00642 * 8 7 6 11 11 S 1.65607 * 119.99689 * 214.99732 * 10 8 7 12 12 O 1.42100 * 106.39864 * 178.53881 * 11 10 8 13 13 O 1.42097 * 106.39937 * 311.46076 * 11 10 8 14 14 C 1.76198 * 107.21703 * 64.99856 * 11 10 8 15 15 C 1.33390 * 125.20120 * 89.99842 * 14 11 10 16 16 C 1.50697 * 122.54243 * 359.97438 * 15 14 11 17 17 O 1.42900 * 109.46892 * 74.99962 * 16 15 14 18 18 Si 1.86299 * 109.47284 * 194.99581 * 16 15 14 19 19 C 1.38427 * 114.92072 * 179.97438 * 15 14 11 20 20 C 1.33397 * 114.91862 * 0.02562 * 19 15 14 21 21 S 1.75882 * 109.59422 * 359.75180 * 20 19 15 22 22 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 23 23 C 1.52999 * 109.46961 * 180.02562 * 4 2 1 24 24 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 25 25 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 26 26 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47070 * 240.00180 * 2 1 3 28 28 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 30 30 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 4 2 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 4 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 4 35 35 H 0.96995 * 119.99920 * 34.99552 * 10 8 7 36 36 H 1.08999 * 109.46978 * 315.00175 * 16 15 14 37 37 H 0.96701 * 113.99888 * 180.02562 * 17 16 15 38 38 H 1.48503 * 110.00016 * 178.68137 * 18 16 15 39 39 H 1.48490 * 110.00309 * 300.00256 * 18 16 15 40 40 H 1.07996 * 122.54092 * 180.02562 * 19 15 14 41 41 H 1.07994 * 125.19967 * 180.02562 * 20 19 15 42 42 H 1.09002 * 109.47153 * 60.00231 * 22 8 7 43 43 H 1.09001 * 109.47289 * 180.02562 * 22 8 7 44 44 H 1.09000 * 109.47486 * 59.99547 * 23 4 2 45 45 H 1.09002 * 109.46716 * 299.99630 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8848 2.4987 8 6 3.5696 -2.8848 2.4993 9 1 3.9327 -3.3988 3.3892 10 7 4.0584 -3.5755 1.3034 11 16 5.4421 -4.4824 1.3784 12 8 5.6262 -5.0411 0.0849 13 8 6.4174 -3.6737 2.0218 14 6 5.1219 -5.8335 2.4631 15 6 4.6372 -7.0194 2.0918 16 6 4.2988 -7.3446 0.6598 17 8 5.5038 -7.5643 -0.0762 18 14 3.2479 -8.8818 0.6036 19 6 4.4684 -7.9289 3.1217 20 6 4.8157 -7.4813 4.3294 21 16 5.3990 -5.8271 4.2000 22 6 4.0795 -1.4423 2.4993 23 6 3.5700 -0.7207 1.2494 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.8934 -2.6776 0.3591 32 1 0.4401 -2.1638 1.2492 33 1 1.6759 -2.3709 3.3884 34 1 1.6767 -3.9126 2.4984 35 1 3.5716 -3.5016 0.4677 36 1 3.7499 -6.5128 0.2183 37 1 5.3618 -7.7785 -1.0085 38 1 2.8809 -9.1952 -0.8009 39 1 3.9850 -10.0232 1.2026 40 1 4.0847 -8.9253 2.9597 41 1 4.7527 -8.0494 5.2456 42 1 3.7158 -0.9283 3.3891 43 1 5.1695 -1.4422 2.4993 44 1 3.9330 0.3071 1.2496 45 1 3.9336 -1.2343 0.3594 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623132_13652106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:16 Heat of formation + Delta-G solvation = -82.529045 kcal Electronic energy + Delta-G solvation = -28053.068452 eV Core-core repulsion = 24290.306738 eV Total energy + Delta-G solvation = -3762.761715 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.64874 -39.94619 -38.03967 -37.11120 -36.99305 -36.69764 -33.28751 -31.95789 -31.46683 -29.55083 -28.07913 -27.99103 -24.17133 -24.08078 -23.40542 -21.59101 -21.13498 -20.72502 -19.57220 -19.35637 -18.65363 -18.37401 -17.35103 -16.98178 -16.58760 -16.11048 -15.76285 -15.67083 -15.36121 -15.28380 -14.88528 -14.60937 -14.48689 -14.28302 -14.19984 -14.17500 -13.62452 -13.60936 -13.46886 -13.15659 -12.93518 -12.86487 -12.69222 -12.64184 -12.54626 -12.44758 -12.39975 -12.31120 -12.09237 -12.06054 -11.74495 -11.58663 -11.36710 -11.18985 -10.89168 -10.51113 -10.42735 -10.36151 -9.62771 -5.06354 -0.76074 -0.47158 0.32143 0.66003 1.16299 1.21441 1.52760 1.87732 2.07268 2.76138 3.24984 3.50962 3.58207 3.65702 3.69200 3.82155 3.90976 3.95879 4.02558 4.06930 4.13566 4.24723 4.25779 4.33107 4.35848 4.51345 4.55070 4.61659 4.67095 4.71258 4.73961 4.75862 4.89861 4.92442 4.95829 5.03706 5.05554 5.07646 5.12336 5.14868 5.20171 5.27107 5.33307 5.40082 5.50125 5.57212 5.92983 6.53526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.084 4.084 5 H 0.072 0.928 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.154 3.846 9 H 0.081 0.919 10 N -1.107 6.107 11 S 2.711 3.289 12 O -0.932 6.932 13 O -0.950 6.950 14 C -0.777 4.777 15 C 0.055 3.945 16 C -0.076 4.076 17 O -0.509 6.509 18 Si 0.686 3.314 19 C -0.163 4.163 20 C -0.164 4.164 21 S 0.224 5.776 22 C -0.140 4.140 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.418 0.582 36 H 0.080 0.920 37 H 0.383 0.617 38 H -0.255 1.255 39 H -0.251 1.251 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 -0.061 2.672 7.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.091 0.909 6 C -0.155 4.155 7 C -0.164 4.164 8 C 0.047 3.953 9 H 0.099 0.901 10 N -0.870 5.870 11 S 2.795 3.205 12 O -0.922 6.922 13 O -0.940 6.940 14 C -0.978 4.978 15 C 0.038 3.962 16 C -0.188 4.188 17 O -0.317 6.317 18 Si 0.586 3.414 19 C -0.193 4.193 20 C -0.302 4.302 21 S 0.491 5.509 22 C -0.179 4.179 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.255 0.745 36 H 0.098 0.902 37 H 0.232 0.768 38 H -0.179 1.179 39 H -0.176 1.176 40 H 0.172 0.828 41 H 0.196 0.804 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.298 0.458 3.809 6.541 hybrid contribution -0.346 -1.403 -1.750 2.269 sum -5.644 -0.944 2.058 6.081 Atomic orbital electron populations 1.21906 0.95263 1.01808 1.01767 1.21149 0.95700 0.96253 0.98044 1.21909 1.01276 0.95912 1.01742 1.21252 0.95294 0.95446 0.98242 0.90924 1.21648 1.00916 0.95272 0.97672 1.21831 0.93534 1.01541 0.99469 1.20816 0.95374 0.93243 0.85852 0.90087 1.55746 1.47784 1.64195 1.19225 1.01628 0.72937 0.72455 0.73464 1.93650 1.83908 1.78348 1.36293 1.93616 1.56292 1.66610 1.77455 1.35799 1.25189 1.21996 1.14796 1.18033 0.92425 0.90733 0.95056 1.24703 0.93922 1.10562 0.89616 1.86615 1.27315 1.91924 1.25807 0.95341 0.85198 0.76670 0.84184 1.20287 1.05685 1.01681 0.91657 1.26192 1.01984 0.99704 1.02343 1.84301 1.59522 1.09890 0.97223 1.22084 1.02106 0.94592 0.99099 1.21625 0.94926 1.00706 0.98084 0.92718 0.92847 0.92395 0.91320 0.92324 0.92838 0.92705 0.91991 0.91050 0.90282 0.90935 0.74502 0.90238 0.76812 1.17944 1.17561 0.82819 0.80352 0.90586 0.90282 0.91312 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 8.84 37.16 0.33 0.57 16 2 C -0.09 0.14 2.51 -90.62 -0.23 -0.08 16 3 C -0.15 0.16 8.84 37.16 0.33 0.49 16 4 C -0.08 0.17 1.77 -90.63 -0.16 0.01 16 5 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 6 C -0.12 0.34 4.66 -26.73 -0.12 0.21 16 7 C -0.12 0.39 5.63 -26.73 -0.15 0.24 16 8 C 0.15 -0.25 2.98 -67.93 -0.20 -0.45 16 9 H 0.08 -0.16 7.62 -51.93 -0.40 -0.56 16 10 N -1.11 0.97 4.74 -4.89 -0.02 0.94 16 11 S 2.71 7.34 5.58 -107.50 -0.60 6.74 16 12 O -0.93 -4.49 14.29 -66.03 -0.94 -5.43 16 13 O -0.95 -5.26 17.17 -57.17 -0.98 -6.24 16 14 C -0.78 -1.52 6.40 29.04 0.19 -1.33 16 15 C 0.06 0.08 5.17 -106.25 -0.55 -0.47 16 16 C -0.08 -0.06 1.78 36.00 0.06 0.00 16 17 O -0.51 -1.53 11.10 -56.67 -0.63 -2.16 16 18 Si 0.69 -0.77 30.42 -169.99 -5.17 -5.94 16 19 C -0.16 0.01 8.74 -41.20 -0.36 -0.35 16 20 C -0.16 0.17 11.23 29.04 0.33 0.50 16 21 S 0.22 0.10 22.99 -107.50 -2.47 -2.37 16 22 C -0.14 0.12 5.64 -26.70 -0.15 -0.03 16 23 C -0.12 0.13 4.70 -26.70 -0.13 0.01 16 24 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.06 -0.12 6.43 -51.93 -0.33 -0.45 16 27 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.06 -0.06 6.43 -51.93 -0.33 -0.39 16 29 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 30 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 31 H 0.06 -0.19 6.51 -51.93 -0.34 -0.53 16 32 H 0.07 -0.22 6.43 -51.93 -0.33 -0.55 16 33 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 34 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 35 H 0.42 -1.04 6.82 -34.48 -0.24 -1.28 16 36 H 0.08 -0.07 7.16 -51.93 -0.37 -0.44 16 37 H 0.38 -0.24 8.74 45.56 0.40 0.15 16 38 H -0.25 -0.22 7.11 56.52 0.40 0.19 16 39 H -0.25 -0.35 6.86 56.52 0.39 0.04 16 40 H 0.15 -0.26 5.57 -52.49 -0.29 -0.55 16 41 H 0.18 -0.71 8.06 -52.49 -0.42 -1.13 16 42 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 43 H 0.08 0.08 7.64 -51.93 -0.40 -0.32 16 44 H 0.07 -0.06 6.43 -51.93 -0.33 -0.39 16 45 H 0.06 -0.05 7.45 -51.93 -0.39 -0.43 16 LS Contribution 363.70 15.07 5.48 5.48 Total: 0.00 -8.31 363.70 -12.95 -21.26 By element: Atomic # 1 Polarization: -4.81 SS G_CDS: -6.79 Total: -11.60 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.82 Total: -0.68 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.02 Total: 0.94 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -2.55 Total: -13.83 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.17 Total: -5.94 kcal Atomic # 16 Polarization: 7.44 SS G_CDS: -3.07 Total: 4.37 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -8.31 -12.95 -21.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_13652106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.269 kcal (2) G-P(sol) polarization free energy of solvation -8.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds