Wall clock time and date at job start Mon Mar 8 2021 12:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 5 5 H 1.09002 * 109.47103 * 299.99915 * 4 2 1 6 6 C 1.52997 * 109.47482 * 60.00162 * 4 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 4 9 9 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.47042 * 300.00642 * 8 7 6 11 11 S 1.65607 * 119.99689 * 214.99732 * 10 8 7 12 12 O 1.42100 * 106.39864 * 178.53881 * 11 10 8 13 13 O 1.42097 * 106.39937 * 311.46076 * 11 10 8 14 14 C 1.76198 * 107.21703 * 64.99856 * 11 10 8 15 15 C 1.33390 * 125.20120 * 89.99842 * 14 11 10 16 16 C 1.50697 * 122.54243 * 359.97438 * 15 14 11 17 17 O 1.42900 * 109.46892 * 74.99962 * 16 15 14 18 18 Si 1.86299 * 109.47284 * 194.99581 * 16 15 14 19 19 C 1.38427 * 114.92072 * 179.97438 * 15 14 11 20 20 C 1.33397 * 114.91862 * 0.02562 * 19 15 14 21 21 S 1.75882 * 109.59422 * 359.75180 * 20 19 15 22 22 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 23 23 C 1.52999 * 109.46961 * 180.02562 * 4 2 1 24 24 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 25 25 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 26 26 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47070 * 240.00180 * 2 1 3 28 28 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 30 30 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 4 2 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 4 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 4 35 35 H 0.96995 * 119.99920 * 34.99552 * 10 8 7 36 36 H 1.08999 * 109.46978 * 315.00175 * 16 15 14 37 37 H 0.96701 * 113.99888 * 180.02562 * 17 16 15 38 38 H 1.48503 * 110.00016 * 178.68137 * 18 16 15 39 39 H 1.48490 * 110.00309 * 300.00256 * 18 16 15 40 40 H 1.07996 * 122.54092 * 180.02562 * 19 15 14 41 41 H 1.07994 * 125.19967 * 180.02562 * 20 19 15 42 42 H 1.09002 * 109.47153 * 60.00231 * 22 8 7 43 43 H 1.09001 * 109.47289 * 180.02562 * 22 8 7 44 44 H 1.09000 * 109.47486 * 59.99547 * 23 4 2 45 45 H 1.09002 * 109.46716 * 299.99630 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8848 2.4987 8 6 3.5696 -2.8848 2.4993 9 1 3.9327 -3.3988 3.3892 10 7 4.0584 -3.5755 1.3034 11 16 5.4421 -4.4824 1.3784 12 8 5.6262 -5.0411 0.0849 13 8 6.4174 -3.6737 2.0218 14 6 5.1219 -5.8335 2.4631 15 6 4.6372 -7.0194 2.0918 16 6 4.2988 -7.3446 0.6598 17 8 5.5038 -7.5643 -0.0762 18 14 3.2479 -8.8818 0.6036 19 6 4.4684 -7.9289 3.1217 20 6 4.8157 -7.4813 4.3294 21 16 5.3990 -5.8271 4.2000 22 6 4.0795 -1.4423 2.4993 23 6 3.5700 -0.7207 1.2494 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.8934 -2.6776 0.3591 32 1 0.4401 -2.1638 1.2492 33 1 1.6759 -2.3709 3.3884 34 1 1.6767 -3.9126 2.4984 35 1 3.5716 -3.5016 0.4677 36 1 3.7499 -6.5128 0.2183 37 1 5.3618 -7.7785 -1.0085 38 1 2.8809 -9.1952 -0.8009 39 1 3.9850 -10.0232 1.2026 40 1 4.0847 -8.9253 2.9597 41 1 4.7527 -8.0494 5.2456 42 1 3.7158 -0.9283 3.3891 43 1 5.1695 -1.4422 2.4993 44 1 3.9330 0.3071 1.2496 45 1 3.9336 -1.2343 0.3594 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623132_13652106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:15 Heat of formation + Delta-G solvation = -81.073897 kcal Electronic energy + Delta-G solvation = -28053.005353 eV Core-core repulsion = 24290.306738 eV Total energy + Delta-G solvation = -3762.698615 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.53183 -39.96389 -38.29602 -37.21476 -36.97499 -36.91532 -33.23206 -31.81406 -31.46092 -29.45161 -28.04137 -27.96968 -24.14268 -23.96941 -23.26392 -21.66698 -21.06301 -20.63009 -19.59442 -19.38272 -18.77569 -18.48529 -17.37463 -16.98583 -16.54689 -16.13121 -15.85953 -15.69268 -15.25193 -15.23268 -14.76014 -14.62810 -14.39181 -14.25176 -14.17662 -14.16592 -13.66209 -13.63269 -13.33465 -13.23920 -13.16539 -13.04158 -12.67186 -12.61059 -12.57304 -12.49846 -12.42440 -12.23831 -11.98640 -11.92742 -11.63469 -11.60174 -11.24265 -11.08067 -10.77661 -10.50899 -10.41384 -10.33562 -9.64159 -4.97544 -0.82715 -0.57801 0.29490 0.69732 1.21152 1.23352 1.59785 1.92185 1.99872 2.60340 3.24799 3.45766 3.68230 3.76596 3.81914 3.84174 3.95946 4.07274 4.14230 4.17500 4.19868 4.35192 4.35735 4.42964 4.49887 4.66402 4.70048 4.71456 4.73667 4.81417 4.85214 4.86367 4.93488 5.06129 5.09223 5.09462 5.16897 5.20565 5.25322 5.29722 5.32589 5.38668 5.43924 5.51428 5.62740 5.69976 6.03872 6.58216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.078 4.078 5 H 0.074 0.926 6 C -0.118 4.118 7 C -0.119 4.119 8 C 0.150 3.850 9 H 0.085 0.915 10 N -1.094 6.094 11 S 2.718 3.282 12 O -0.961 6.961 13 O -0.987 6.987 14 C -0.797 4.797 15 C 0.050 3.950 16 C -0.104 4.104 17 O -0.538 6.538 18 Si 0.785 3.215 19 C -0.178 4.178 20 C -0.145 4.145 21 S 0.213 5.787 22 C -0.142 4.142 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.426 0.574 36 H 0.091 0.909 37 H 0.394 0.606 38 H -0.282 1.282 39 H -0.283 1.283 40 H 0.171 0.829 41 H 0.212 0.788 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 -1.021 3.698 9.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.096 4.096 5 H 0.092 0.908 6 C -0.155 4.155 7 C -0.158 4.158 8 C 0.043 3.957 9 H 0.103 0.897 10 N -0.859 5.859 11 S 2.806 3.194 12 O -0.950 6.950 13 O -0.977 6.977 14 C -0.999 4.999 15 C 0.032 3.968 16 C -0.213 4.213 17 O -0.348 6.348 18 Si 0.687 3.313 19 C -0.207 4.207 20 C -0.283 4.283 21 S 0.480 5.520 22 C -0.181 4.181 23 C -0.154 4.154 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.244 0.756 38 H -0.209 1.209 39 H -0.210 1.210 40 H 0.188 0.812 41 H 0.229 0.771 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.016 -0.455 4.810 8.518 hybrid contribution 0.211 -1.093 -2.053 2.335 sum -6.804 -1.548 2.757 7.503 Atomic orbital electron populations 1.21889 0.94900 1.02230 1.01528 1.21139 0.95949 0.95853 0.98150 1.21915 1.01048 0.96371 1.01584 1.21190 0.94292 0.96167 0.97983 0.90765 1.21668 1.01382 0.94525 0.97975 1.21826 0.91809 1.02449 0.99727 1.20977 0.96683 0.92491 0.85517 0.89712 1.55449 1.46800 1.63590 1.20067 1.00974 0.73229 0.72445 0.72786 1.93605 1.84740 1.78911 1.37793 1.93569 1.58377 1.67760 1.77977 1.35563 1.26958 1.21978 1.15450 1.18318 0.91913 0.90777 0.95763 1.25223 0.93809 1.12920 0.89358 1.86566 1.29025 1.92308 1.26900 0.94265 0.82798 0.72947 0.81312 1.20487 1.06420 1.02205 0.91578 1.26597 0.99760 0.98612 1.03295 1.84338 1.59897 1.11461 0.96316 1.22092 1.00725 0.95487 0.99767 1.21617 0.95832 1.00256 0.97662 0.92708 0.93331 0.91632 0.91720 0.92711 0.93161 0.92674 0.91783 0.90221 0.89263 0.89668 0.73510 0.89100 0.75600 1.20899 1.20986 0.81172 0.77133 0.89397 0.92590 0.91852 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.55 8.84 71.98 0.64 1.18 16 2 C -0.09 0.27 2.51 -10.80 -0.03 0.25 16 3 C -0.15 0.23 8.84 71.98 0.64 0.87 16 4 C -0.08 0.33 1.77 -10.80 -0.02 0.31 16 5 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 6 C -0.12 0.79 4.66 30.59 0.14 0.93 16 7 C -0.12 0.88 5.63 30.60 0.17 1.06 16 8 C 0.15 -0.45 2.98 44.99 0.13 -0.32 16 9 H 0.08 -0.30 7.62 -2.39 -0.02 -0.32 16 10 N -1.09 1.02 4.74 -169.38 -0.80 0.21 16 11 S 2.72 19.10 5.58 -56.49 -0.31 18.79 16 12 O -0.96 -11.06 14.29 -119.53 -1.71 -12.77 16 13 O -0.99 -13.24 17.17 -128.00 -2.20 -15.44 16 14 C -0.80 -3.60 6.40 66.72 0.43 -3.17 16 15 C 0.05 0.14 5.17 -20.92 -0.11 0.03 16 16 C -0.10 -0.19 1.78 71.23 0.13 -0.06 16 17 O -0.54 -3.82 11.10 -128.49 -1.43 -5.25 16 18 Si 0.78 -2.31 30.42 68.60 2.09 -0.22 16 19 C -0.18 0.23 8.74 21.22 0.19 0.41 16 20 C -0.15 0.53 11.23 66.72 0.75 1.28 16 21 S 0.21 0.18 22.99 -56.49 -1.30 -1.12 16 22 C -0.14 0.11 5.64 30.61 0.17 0.29 16 23 C -0.12 0.16 4.70 30.61 0.14 0.31 16 24 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.06 -0.34 6.43 -2.39 -0.02 -0.35 16 27 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.05 -0.04 6.43 -2.39 -0.02 -0.06 16 29 H 0.05 -0.05 8.14 -2.38 -0.02 -0.07 16 30 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.06 -0.44 6.51 -2.39 -0.02 -0.46 16 32 H 0.08 -0.61 6.43 -2.39 -0.02 -0.63 16 33 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H 0.43 -1.85 6.82 -96.74 -0.66 -2.51 16 36 H 0.09 -0.13 7.16 -2.39 -0.02 -0.14 16 37 H 0.39 0.01 8.74 -74.06 -0.65 -0.64 16 38 H -0.28 -0.39 7.11 99.48 0.71 0.32 16 39 H -0.28 -0.64 6.86 99.48 0.68 0.05 16 40 H 0.17 -0.86 5.57 -2.91 -0.02 -0.87 16 41 H 0.21 -2.28 8.06 -2.91 -0.02 -2.31 16 42 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.06 0.23 7.64 -2.39 -0.02 0.21 16 44 H 0.06 -0.03 6.43 -2.39 -0.02 -0.05 16 45 H 0.06 -0.01 7.45 -2.39 -0.02 -0.03 16 Total: 0.00 -20.60 363.70 -2.57 -23.16 By element: Atomic # 1 Polarization: -10.46 SS G_CDS: -0.28 Total: -10.74 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 3.37 Total: 3.37 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -0.80 Total: 0.21 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -5.33 Total: -33.46 kcal Atomic # 14 Polarization: -2.31 SS G_CDS: 2.09 Total: -0.22 kcal Atomic # 16 Polarization: 19.28 SS G_CDS: -1.61 Total: 17.67 kcal Total: -20.60 -2.57 -23.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_13652106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.909 kcal (2) G-P(sol) polarization free energy of solvation -20.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds