Wall clock time and date at job start Mon Mar 8 2021 12:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47187 * 2 1 4 4 C 1.52999 * 109.46994 * 120.00166 * 2 1 3 5 5 H 1.08994 * 109.47415 * 299.99933 * 4 2 1 6 6 C 1.53004 * 109.47298 * 59.99965 * 4 2 1 7 7 C 1.52999 * 109.47298 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46756 * 299.99972 * 7 6 4 9 9 H 1.09003 * 109.47063 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47211 * 299.99776 * 8 7 6 11 11 S 1.65603 * 120.00121 * 216.07036 * 10 8 7 12 12 O 1.42101 * 106.40519 * 310.34991 * 11 10 8 13 13 O 1.42096 * 106.40323 * 177.42814 * 11 10 8 14 14 C 1.76200 * 107.21565 * 63.88988 * 11 10 8 15 15 C 1.33387 * 122.54378 * 63.64477 * 14 11 10 16 16 C 1.50700 * 125.19841 * 0.23867 * 15 14 11 17 17 O 1.42901 * 109.47581 * 282.36538 * 16 15 14 18 18 Si 1.86305 * 109.46985 * 162.36476 * 16 15 14 19 19 S 1.75881 * 109.59872 * 179.97438 * 15 14 11 20 20 C 1.75883 * 90.96849 * 359.97438 * 19 15 14 21 21 C 1.33389 * 109.59510 * 0.02562 * 20 19 15 22 22 C 1.52995 * 109.47543 * 60.00189 * 8 7 6 23 23 C 1.52999 * 109.46940 * 299.99698 * 22 8 7 24 24 H 1.09003 * 109.47301 * 59.99798 * 1 2 3 25 25 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46801 * 300.00093 * 1 2 3 27 27 H 1.08998 * 109.46801 * 239.99907 * 2 1 3 28 28 H 1.08999 * 109.47125 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47165 * 300.00285 * 3 2 1 30 30 H 1.09007 * 109.47080 * 60.00147 * 3 2 1 31 31 H 1.09006 * 109.46971 * 300.00214 * 6 4 2 32 32 H 1.08998 * 109.47378 * 59.99720 * 6 4 2 33 33 H 1.08996 * 109.46928 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47135 * 59.99571 * 7 6 4 35 35 H 0.97000 * 119.99807 * 36.07394 * 10 8 7 36 36 H 1.09006 * 109.47054 * 42.36759 * 16 15 14 37 37 H 0.96703 * 113.99711 * 302.20662 * 17 16 15 38 38 H 1.48493 * 109.99927 * 58.68355 * 18 16 15 39 39 H 1.48497 * 109.99971 * 180.02562 * 18 16 15 40 40 H 1.08003 * 125.20538 * 179.97438 * 20 19 15 41 41 H 1.08002 * 122.53725 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47386 * 59.99765 * 22 8 7 43 43 H 1.08999 * 109.47414 * 179.97438 * 22 8 7 44 44 H 1.09004 * 109.47429 * 179.97438 * 23 22 8 45 45 H 1.08994 * 109.47415 * 299.99823 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8853 2.4981 8 6 3.5705 -2.8853 2.4974 9 1 3.9342 -3.3997 3.3869 10 7 4.0583 -3.5757 1.3009 11 16 5.4272 -4.5041 1.3809 12 8 6.4175 -3.7053 2.0138 13 8 5.5986 -5.0782 0.0925 14 6 5.0883 -5.8394 2.4795 15 6 4.1585 -6.7609 2.2235 16 6 3.2897 -6.7996 0.9927 17 8 2.2432 -5.8346 1.1178 18 14 2.5486 -8.4991 0.8091 19 16 4.1068 -7.9280 3.5382 20 6 5.3893 -7.0740 4.3865 21 6 5.7676 -6.0122 3.6732 22 6 4.0805 -1.4429 2.4975 23 6 3.5700 -0.7214 1.2486 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 0.4399 -2.1638 1.2492 32 1 1.8933 -2.6777 0.3592 33 1 1.6768 -3.9128 2.4983 34 1 1.6776 -2.3716 3.3883 35 1 3.5794 -3.4890 0.4619 36 1 3.8931 -6.5695 0.1146 37 1 1.6857 -5.9579 1.8982 38 1 1.7494 -8.8376 2.0139 39 1 1.6900 -8.5506 -0.4014 40 1 5.8062 -7.3644 5.3395 41 1 6.5449 -5.3384 4.0022 42 1 3.7176 -0.9291 3.3877 43 1 5.1705 -1.4429 2.4974 44 1 3.9330 0.3064 1.2488 45 1 3.9329 -1.2350 0.3584 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623132_14772022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:20 Heat of formation + Delta-G solvation = -88.246100 kcal Electronic energy + Delta-G solvation = -28558.824735 eV Core-core repulsion = 24795.815110 eV Total energy + Delta-G solvation = -3763.009625 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59631 -39.64760 -38.24800 -37.64126 -36.90616 -36.75111 -33.21082 -31.93701 -31.86224 -29.47795 -28.05070 -27.45403 -24.51759 -23.98325 -23.34579 -21.89700 -21.05924 -20.74043 -19.89253 -19.23118 -18.71620 -18.10924 -17.14837 -16.92903 -16.62421 -16.36072 -15.91643 -15.58754 -15.43218 -15.30443 -15.08137 -14.81035 -14.45407 -14.23906 -14.22070 -14.05570 -13.92352 -13.57787 -13.41396 -13.13516 -13.07781 -13.00339 -12.90335 -12.64459 -12.59299 -12.51889 -12.32866 -12.20288 -12.04026 -12.00488 -11.70363 -11.55269 -11.31496 -11.09792 -10.93714 -10.83829 -10.35786 -10.25471 -9.89758 -5.16447 -0.68589 -0.50758 0.30157 0.55217 1.00310 1.07221 1.38451 1.75932 2.10439 2.74553 3.02215 3.23531 3.48681 3.61463 3.69640 3.74737 3.98907 4.02636 4.08458 4.12935 4.21379 4.31214 4.33739 4.39521 4.40607 4.58180 4.61651 4.64118 4.66101 4.77022 4.78253 4.80538 4.85259 4.97854 4.98863 5.07171 5.07826 5.12047 5.19280 5.21086 5.25461 5.32128 5.37206 5.45100 5.54323 5.62401 6.03870 6.09579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.084 4.084 5 H 0.070 0.930 6 C -0.114 4.114 7 C -0.120 4.120 8 C 0.161 3.839 9 H 0.080 0.920 10 N -1.095 6.095 11 S 2.707 3.293 12 O -0.953 6.953 13 O -0.957 6.957 14 C -0.660 4.660 15 C -0.096 4.096 16 C -0.080 4.080 17 O -0.508 6.508 18 Si 0.665 3.335 19 S 0.151 5.849 20 C -0.209 4.209 21 C -0.077 4.077 22 C -0.138 4.138 23 C -0.115 4.115 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.421 0.579 36 H 0.152 0.848 37 H 0.376 0.624 38 H -0.237 1.237 39 H -0.229 1.229 40 H 0.176 0.824 41 H 0.159 0.841 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -1.777 2.864 4.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.088 0.912 6 C -0.152 4.152 7 C -0.158 4.158 8 C 0.054 3.946 9 H 0.098 0.902 10 N -0.857 5.857 11 S 2.793 3.207 12 O -0.942 6.942 13 O -0.947 6.947 14 C -0.760 4.760 15 C -0.217 4.217 16 C -0.192 4.192 17 O -0.315 6.315 18 Si 0.562 3.438 19 S 0.416 5.584 20 C -0.345 4.345 21 C -0.105 4.105 22 C -0.178 4.178 23 C -0.153 4.153 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.258 0.742 36 H 0.169 0.831 37 H 0.225 0.775 38 H -0.161 1.161 39 H -0.151 1.151 40 H 0.193 0.807 41 H 0.176 0.824 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.599 -3.241 2.377 5.395 hybrid contribution -0.255 1.534 0.700 1.705 sum -3.854 -1.707 3.077 5.218 Atomic orbital electron populations 1.21902 0.95350 1.01777 1.01673 1.21145 0.95637 0.96205 0.98132 1.21906 1.01267 0.95946 1.01676 1.21252 0.95319 0.95590 0.98050 0.91152 1.21605 1.00595 0.94995 0.98000 1.21785 0.93788 1.01234 0.99039 1.20697 0.95145 0.92927 0.85869 0.90191 1.55447 1.48215 1.63091 1.18981 1.01654 0.72852 0.73026 0.73166 1.93594 1.55949 1.67130 1.77578 1.93584 1.84837 1.78471 1.37828 1.30006 1.08837 1.21581 1.15542 1.24951 0.99274 0.97218 1.00261 1.25065 0.91404 1.06511 0.96195 1.86724 1.43569 1.51404 1.49803 0.94544 0.87076 0.78608 0.83563 1.84507 1.34556 1.27557 1.11826 1.25912 1.02799 1.00438 1.05339 1.19794 1.00336 0.98563 0.91796 1.22060 1.01972 0.94813 0.98913 1.21603 0.94906 1.00582 0.98160 0.92884 0.92423 0.92807 0.91308 0.92319 0.92875 0.92770 0.91457 0.91635 0.91114 0.90955 0.74155 0.83087 0.77533 1.16065 1.15140 0.80712 0.82365 0.90889 0.90385 0.91478 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 8.84 37.16 0.33 0.46 16 2 C -0.09 0.08 2.50 -90.62 -0.23 -0.15 16 3 C -0.15 0.09 8.84 37.15 0.33 0.41 16 4 C -0.08 0.12 1.78 -90.62 -0.16 -0.04 16 5 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 6 C -0.11 0.23 4.66 -26.73 -0.12 0.11 16 7 C -0.12 0.31 5.63 -26.73 -0.15 0.16 16 8 C 0.16 -0.24 2.99 -67.94 -0.20 -0.44 16 9 H 0.08 -0.15 7.79 -51.93 -0.40 -0.56 16 10 N -1.09 0.67 3.95 -4.89 -0.02 0.65 16 11 S 2.71 5.52 5.21 -107.50 -0.56 4.96 16 12 O -0.95 -4.35 16.75 -57.17 -0.96 -5.31 16 13 O -0.96 -4.33 16.22 -57.17 -0.93 -5.26 16 14 C -0.66 -0.49 5.59 -41.21 -0.23 -0.72 16 15 C -0.10 0.04 5.59 -36.00 -0.20 -0.17 16 16 C -0.08 0.08 2.38 36.01 0.09 0.16 16 17 O -0.51 1.05 11.17 -35.23 -0.39 0.66 16 18 Si 0.66 -1.09 31.16 -169.99 -5.30 -6.39 16 19 S 0.15 -0.19 20.78 -107.50 -2.23 -2.42 16 20 C -0.21 0.21 11.23 29.04 0.33 0.54 16 21 C -0.08 -0.02 9.70 -41.21 -0.40 -0.42 16 22 C -0.14 0.09 5.64 -26.73 -0.15 -0.06 16 23 C -0.12 0.09 4.69 -26.73 -0.13 -0.04 16 24 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 25 H 0.06 -0.06 6.43 -51.93 -0.33 -0.40 16 26 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 27 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.06 -0.03 6.43 -51.93 -0.33 -0.36 16 29 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.07 -0.13 6.43 -51.93 -0.33 -0.46 16 32 H 0.07 -0.11 6.51 -51.93 -0.34 -0.45 16 33 H 0.07 -0.24 6.47 -51.93 -0.34 -0.57 16 34 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 35 H 0.42 -0.56 6.78 -34.47 -0.23 -0.79 16 36 H 0.15 -0.02 6.17 -51.93 -0.32 -0.34 16 37 H 0.38 -1.76 8.04 45.56 0.37 -1.40 16 38 H -0.24 0.18 7.11 56.52 0.40 0.58 16 39 H -0.23 -0.20 7.11 56.52 0.40 0.20 16 40 H 0.18 -0.56 8.06 -52.48 -0.42 -0.98 16 41 H 0.16 -0.04 7.74 -52.49 -0.41 -0.45 16 42 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 43 H 0.08 0.07 7.75 -51.93 -0.40 -0.33 16 44 H 0.07 -0.03 6.43 -51.93 -0.33 -0.37 16 45 H 0.06 -0.02 7.42 -51.93 -0.39 -0.40 16 LS Contribution 363.10 15.07 5.47 5.47 Total: 0.00 -6.19 363.10 -12.62 -18.81 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: -6.80 Total: -10.99 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.91 Total: -0.19 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -0.02 Total: 0.65 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -2.28 Total: -9.91 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: -5.30 Total: -6.39 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -2.79 Total: 2.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -6.19 -12.62 -18.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_14772022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.432 kcal (2) G-P(sol) polarization free energy of solvation -6.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds