Wall clock time and date at job start Mon Mar 8 2021 12:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47187 * 2 1 4 4 C 1.52999 * 109.46994 * 120.00166 * 2 1 3 5 5 H 1.08994 * 109.47415 * 299.99933 * 4 2 1 6 6 C 1.53004 * 109.47298 * 59.99965 * 4 2 1 7 7 C 1.52999 * 109.47298 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46756 * 299.99972 * 7 6 4 9 9 H 1.09003 * 109.47063 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47211 * 299.99776 * 8 7 6 11 11 S 1.65603 * 120.00121 * 216.07036 * 10 8 7 12 12 O 1.42101 * 106.40519 * 310.34991 * 11 10 8 13 13 O 1.42096 * 106.40323 * 177.42814 * 11 10 8 14 14 C 1.76200 * 107.21565 * 63.88988 * 11 10 8 15 15 C 1.33387 * 122.54378 * 63.64477 * 14 11 10 16 16 C 1.50700 * 125.19841 * 0.23867 * 15 14 11 17 17 O 1.42901 * 109.47581 * 282.36538 * 16 15 14 18 18 Si 1.86305 * 109.46985 * 162.36476 * 16 15 14 19 19 S 1.75881 * 109.59872 * 179.97438 * 15 14 11 20 20 C 1.75883 * 90.96849 * 359.97438 * 19 15 14 21 21 C 1.33389 * 109.59510 * 0.02562 * 20 19 15 22 22 C 1.52995 * 109.47543 * 60.00189 * 8 7 6 23 23 C 1.52999 * 109.46940 * 299.99698 * 22 8 7 24 24 H 1.09003 * 109.47301 * 59.99798 * 1 2 3 25 25 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46801 * 300.00093 * 1 2 3 27 27 H 1.08998 * 109.46801 * 239.99907 * 2 1 3 28 28 H 1.08999 * 109.47125 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47165 * 300.00285 * 3 2 1 30 30 H 1.09007 * 109.47080 * 60.00147 * 3 2 1 31 31 H 1.09006 * 109.46971 * 300.00214 * 6 4 2 32 32 H 1.08998 * 109.47378 * 59.99720 * 6 4 2 33 33 H 1.08996 * 109.46928 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47135 * 59.99571 * 7 6 4 35 35 H 0.97000 * 119.99807 * 36.07394 * 10 8 7 36 36 H 1.09006 * 109.47054 * 42.36759 * 16 15 14 37 37 H 0.96703 * 113.99711 * 302.20662 * 17 16 15 38 38 H 1.48493 * 109.99927 * 58.68355 * 18 16 15 39 39 H 1.48497 * 109.99971 * 180.02562 * 18 16 15 40 40 H 1.08003 * 125.20538 * 179.97438 * 20 19 15 41 41 H 1.08002 * 122.53725 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47386 * 59.99765 * 22 8 7 43 43 H 1.08999 * 109.47414 * 179.97438 * 22 8 7 44 44 H 1.09004 * 109.47429 * 179.97438 * 23 22 8 45 45 H 1.08994 * 109.47415 * 299.99823 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8853 2.4981 8 6 3.5705 -2.8853 2.4974 9 1 3.9342 -3.3997 3.3869 10 7 4.0583 -3.5757 1.3009 11 16 5.4272 -4.5041 1.3809 12 8 6.4175 -3.7053 2.0138 13 8 5.5986 -5.0782 0.0925 14 6 5.0883 -5.8394 2.4795 15 6 4.1585 -6.7609 2.2235 16 6 3.2897 -6.7996 0.9927 17 8 2.2432 -5.8346 1.1178 18 14 2.5486 -8.4991 0.8091 19 16 4.1068 -7.9280 3.5382 20 6 5.3893 -7.0740 4.3865 21 6 5.7676 -6.0122 3.6732 22 6 4.0805 -1.4429 2.4975 23 6 3.5700 -0.7214 1.2486 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 0.4399 -2.1638 1.2492 32 1 1.8933 -2.6777 0.3592 33 1 1.6768 -3.9128 2.4983 34 1 1.6776 -2.3716 3.3883 35 1 3.5794 -3.4890 0.4619 36 1 3.8931 -6.5695 0.1146 37 1 1.6857 -5.9579 1.8982 38 1 1.7494 -8.8376 2.0139 39 1 1.6900 -8.5506 -0.4014 40 1 5.8062 -7.3644 5.3395 41 1 6.5449 -5.3384 4.0022 42 1 3.7176 -0.9291 3.3877 43 1 5.1705 -1.4429 2.4974 44 1 3.9330 0.3064 1.2488 45 1 3.9329 -1.2350 0.3584 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623132_14772022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:19 Heat of formation + Delta-G solvation = -84.776964 kcal Electronic energy + Delta-G solvation = -28558.674302 eV Core-core repulsion = 24795.815110 eV Total energy + Delta-G solvation = -3762.859192 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.52218 -39.58945 -38.44133 -37.57466 -37.01114 -36.85935 -33.18524 -31.85923 -31.77364 -29.41581 -28.00102 -27.40568 -24.46154 -23.91506 -23.25317 -21.91235 -21.01528 -20.69717 -19.89337 -19.16875 -18.80434 -18.10392 -17.08653 -16.95270 -16.60150 -16.28593 -15.96676 -15.54290 -15.37634 -15.25380 -15.07217 -14.73359 -14.39696 -14.19091 -14.17897 -13.98276 -13.86379 -13.62691 -13.34694 -13.31859 -13.23093 -13.06720 -12.93872 -12.58786 -12.55123 -12.53145 -12.28907 -12.18539 -11.97879 -11.92181 -11.65039 -11.52911 -11.24816 -11.02570 -10.83173 -10.76801 -10.30392 -10.20855 -9.81611 -5.03614 -0.74913 -0.51922 0.36788 0.61458 1.09003 1.10195 1.47574 1.84214 2.05203 2.63918 3.16052 3.29172 3.42947 3.70105 3.77125 3.84208 4.05451 4.10400 4.16091 4.21728 4.27338 4.37065 4.40937 4.45163 4.50774 4.68493 4.69621 4.70273 4.73107 4.82765 4.83395 4.86896 4.92283 5.03187 5.08783 5.11358 5.14610 5.19926 5.25019 5.31057 5.34171 5.39013 5.42561 5.52393 5.61492 5.69860 6.12675 6.35681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.072 0.928 6 C -0.113 4.113 7 C -0.114 4.114 8 C 0.159 3.841 9 H 0.087 0.913 10 N -1.086 6.086 11 S 2.714 3.286 12 O -0.985 6.985 13 O -0.988 6.988 14 C -0.667 4.667 15 C -0.099 4.099 16 C -0.086 4.086 17 O -0.512 6.512 18 Si 0.718 3.282 19 S 0.183 5.817 20 C -0.206 4.206 21 C -0.096 4.096 22 C -0.139 4.139 23 C -0.115 4.115 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.425 0.575 36 H 0.140 0.860 37 H 0.389 0.611 38 H -0.240 1.240 39 H -0.266 1.266 40 H 0.198 0.802 41 H 0.157 0.843 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -2.667 4.138 6.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.090 0.910 6 C -0.151 4.151 7 C -0.153 4.153 8 C 0.052 3.948 9 H 0.105 0.895 10 N -0.850 5.850 11 S 2.803 3.197 12 O -0.975 6.975 13 O -0.979 6.979 14 C -0.769 4.769 15 C -0.220 4.220 16 C -0.197 4.197 17 O -0.320 6.320 18 Si 0.618 3.382 19 S 0.447 5.553 20 C -0.341 4.341 21 C -0.124 4.124 22 C -0.178 4.178 23 C -0.152 4.152 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.263 0.737 36 H 0.157 0.843 37 H 0.240 0.760 38 H -0.164 1.164 39 H -0.191 1.191 40 H 0.215 0.785 41 H 0.175 0.825 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.682 -4.101 3.647 7.214 hybrid contribution 0.048 1.813 0.310 1.840 sum -4.634 -2.288 3.957 6.509 Atomic orbital electron populations 1.21881 0.95092 1.02003 1.01505 1.21137 0.95807 0.95967 0.98184 1.21904 1.01117 0.96205 1.01563 1.21186 0.94555 0.96081 0.97752 0.90996 1.21593 1.00802 0.94445 0.98212 1.21774 0.92467 1.02038 0.99040 1.20825 0.96111 0.92256 0.85606 0.89536 1.55225 1.47404 1.62722 1.19611 1.01048 0.72977 0.73099 0.72542 1.93550 1.57756 1.68211 1.77966 1.93538 1.85580 1.79086 1.39647 1.29717 1.09976 1.21545 1.15693 1.25074 0.98906 0.97292 1.00760 1.25146 0.91619 1.07312 0.95626 1.86702 1.43459 1.51169 1.50714 0.93832 0.85738 0.77550 0.81122 1.84411 1.33845 1.26393 1.10640 1.26224 1.02387 0.99640 1.05898 1.19872 1.00952 0.99502 0.92086 1.22059 1.00791 0.95620 0.99366 1.21590 0.95564 1.00233 0.97852 0.93294 0.91989 0.92717 0.91902 0.92572 0.93158 0.92683 0.91005 0.92026 0.89887 0.90030 0.73683 0.84293 0.76016 1.16412 1.19143 0.78534 0.82521 0.89821 0.92338 0.91899 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.28 8.84 71.98 0.64 0.91 16 2 C -0.09 0.13 2.50 -10.79 -0.03 0.10 16 3 C -0.15 0.08 8.84 71.98 0.64 0.72 16 4 C -0.08 0.22 1.78 -10.79 -0.02 0.20 16 5 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 6 C -0.11 0.51 4.66 30.60 0.14 0.66 16 7 C -0.11 0.71 5.63 30.59 0.17 0.88 16 8 C 0.16 -0.45 2.99 44.99 0.13 -0.31 16 9 H 0.09 -0.33 7.79 -2.39 -0.02 -0.35 16 10 N -1.09 0.37 3.95 -169.40 -0.67 -0.30 16 11 S 2.71 15.13 5.21 -56.49 -0.29 14.83 16 12 O -0.98 -10.98 16.75 -128.00 -2.14 -13.12 16 13 O -0.99 -10.81 16.22 -128.00 -2.08 -12.89 16 14 C -0.67 -1.25 5.59 21.22 0.12 -1.13 16 15 C -0.10 0.11 5.59 24.59 0.14 0.24 16 16 C -0.09 0.17 2.38 71.24 0.17 0.34 16 17 O -0.51 2.34 11.17 -148.98 -1.66 0.68 16 18 Si 0.72 -2.59 31.16 68.60 2.14 -0.46 16 19 S 0.18 -0.72 20.78 -56.49 -1.17 -1.90 16 20 C -0.21 0.66 11.23 66.72 0.75 1.41 16 21 C -0.10 -0.06 9.70 21.22 0.21 0.15 16 22 C -0.14 0.09 5.64 30.59 0.17 0.26 16 23 C -0.11 0.07 4.69 30.59 0.14 0.22 16 24 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.06 -0.17 6.43 -2.38 -0.02 -0.18 16 26 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.06 0.00 6.43 -2.39 -0.02 -0.02 16 29 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.05 -0.04 8.14 -2.38 -0.02 -0.06 16 31 H 0.07 -0.35 6.43 -2.38 -0.02 -0.37 16 32 H 0.06 -0.21 6.51 -2.39 -0.02 -0.23 16 33 H 0.08 -0.69 6.47 -2.39 -0.02 -0.71 16 34 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.42 -0.71 6.78 -96.74 -0.66 -1.37 16 36 H 0.14 0.10 6.17 -2.38 -0.01 0.09 16 37 H 0.39 -4.16 8.04 -74.06 -0.60 -4.75 16 38 H -0.24 0.72 7.11 99.48 0.71 1.42 16 39 H -0.27 -0.69 7.11 99.48 0.71 0.01 16 40 H 0.20 -1.63 8.06 -2.91 -0.02 -1.65 16 41 H 0.16 0.05 7.74 -2.91 -0.02 0.03 16 42 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.06 0.21 7.75 -2.39 -0.02 0.19 16 44 H 0.06 0.01 6.43 -2.38 -0.02 -0.01 16 45 H 0.06 0.05 7.42 -2.39 -0.02 0.03 16 Total: 0.00 -15.05 363.10 -2.71 -17.76 By element: Atomic # 1 Polarization: -9.04 SS G_CDS: -0.20 Total: -9.24 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 3.37 Total: 4.63 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -0.67 Total: -0.30 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -5.88 Total: -25.33 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.14 Total: -0.46 kcal Atomic # 16 Polarization: 14.40 SS G_CDS: -1.47 Total: 12.94 kcal Total: -15.05 -2.71 -17.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_14772022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.018 kcal (2) G-P(sol) polarization free energy of solvation -15.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds