Wall clock time and date at job start Mon Mar 8 2021 12:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 C 1.53001 * 109.47005 * 119.99866 * 2 1 3 5 5 H 1.09004 * 109.47096 * 300.00297 * 4 2 1 6 6 C 1.52999 * 109.47434 * 60.00121 * 4 2 1 7 7 C 1.52998 * 109.47476 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46966 * 299.99952 * 7 6 4 9 9 H 1.08998 * 109.47628 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46891 * 299.99924 * 8 7 6 11 11 S 1.65603 * 120.00136 * 214.99755 * 10 8 7 12 12 O 1.42099 * 106.40023 * 311.46551 * 11 10 8 13 13 O 1.42097 * 106.40180 * 178.54223 * 11 10 8 14 14 C 1.76200 * 107.21581 * 65.00193 * 11 10 8 15 15 C 1.33395 * 122.53893 * 270.25812 * 14 11 10 16 16 S 1.75886 * 109.59043 * 180.24204 * 15 14 11 17 17 C 1.75885 * 90.97065 * 359.73076 * 16 15 14 18 18 C 1.50701 * 125.19989 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47143 * 119.97217 * 18 17 16 20 20 Si 1.86301 * 109.47393 * 359.96971 * 18 17 16 21 21 C 1.33388 * 109.59458 * 359.97438 * 17 16 15 22 22 C 1.52999 * 109.47355 * 59.99688 * 8 7 6 23 23 C 1.53000 * 109.47289 * 180.02562 * 4 2 1 24 24 H 1.09003 * 109.46865 * 60.00576 * 1 2 3 25 25 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47293 * 300.00114 * 1 2 3 27 27 H 1.08996 * 109.47701 * 239.99762 * 2 1 3 28 28 H 1.08998 * 109.47084 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46935 * 299.99743 * 3 2 1 30 30 H 1.09004 * 109.46888 * 59.99619 * 3 2 1 31 31 H 1.08998 * 109.46939 * 59.99580 * 6 4 2 32 32 H 1.09001 * 109.47146 * 300.00050 * 6 4 2 33 33 H 1.09000 * 109.46939 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47681 * 59.99665 * 7 6 4 35 35 H 0.97000 * 120.00174 * 35.00229 * 10 8 7 36 36 H 1.07998 * 125.20353 * 359.97188 * 15 14 11 37 37 H 1.08999 * 109.46974 * 239.96677 * 18 17 16 38 38 H 0.96701 * 114.00226 * 299.99971 * 19 18 17 39 39 H 1.48507 * 109.99818 * 180.02562 * 20 18 17 40 40 H 1.48492 * 110.00002 * 301.32100 * 20 18 17 41 41 H 1.08002 * 122.53671 * 179.97438 * 21 17 16 42 42 H 1.09004 * 109.46602 * 60.00211 * 22 8 7 43 43 H 1.08998 * 109.47029 * 180.02562 * 22 8 7 44 44 H 1.08996 * 109.47359 * 299.99860 * 23 4 2 45 45 H 1.09000 * 109.47185 * 60.00134 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 2.0394 -2.8848 2.4989 8 6 3.5694 -2.8848 2.4996 9 1 3.9325 -3.3988 3.3895 10 7 4.0582 -3.5756 1.3037 11 16 5.4418 -4.4825 1.3787 12 8 6.4172 -3.6738 2.0221 13 8 5.6260 -5.0413 0.0852 14 6 5.1216 -5.8336 2.4634 15 6 5.3426 -5.7668 3.7773 16 16 4.9145 -7.2997 4.5259 17 6 4.4380 -7.9619 2.9677 18 6 3.9081 -9.3543 2.7409 19 8 2.5962 -9.2791 2.1793 20 14 3.8371 -10.2641 4.3651 21 6 4.6165 -7.0428 2.0176 22 6 4.0795 -1.4423 2.4995 23 6 3.5699 -0.7207 1.2497 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.8933 -2.6776 0.3594 32 1 0.4400 -2.1638 1.2493 33 1 1.6765 -3.9126 2.4987 34 1 1.6758 -2.3709 3.3887 35 1 3.5715 -3.5018 0.4679 36 1 5.7295 -4.9050 4.3005 37 1 4.5670 -9.8865 2.0548 38 1 1.9554 -8.8173 2.7371 39 1 3.3167 -11.6389 4.1548 40 1 5.1899 -10.3213 4.9747 41 1 4.3894 -7.2298 0.9784 42 1 3.7158 -0.9283 3.3893 43 1 5.1695 -1.4423 2.4995 44 1 3.9337 -1.2343 0.3598 45 1 3.9329 0.3071 1.2499 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623132_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:23 Heat of formation + Delta-G solvation = -91.115685 kcal Electronic energy + Delta-G solvation = -27353.163833 eV Core-core repulsion = 23590.029774 eV Total energy + Delta-G solvation = -3763.134059 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.67126 -39.53793 -38.20375 -37.60299 -37.00544 -36.81374 -33.30145 -31.98122 -31.87394 -29.56583 -28.08421 -27.27743 -24.95415 -24.08713 -23.42750 -21.52611 -21.15008 -20.80316 -19.91622 -19.11333 -18.69505 -17.90552 -17.66064 -17.14271 -16.58319 -16.38162 -15.83767 -15.54082 -15.39578 -15.36158 -14.95399 -14.88888 -14.51626 -14.34542 -14.25533 -14.16737 -13.96670 -13.65803 -13.49081 -13.17207 -13.13230 -13.00204 -12.88345 -12.70754 -12.59831 -12.52738 -12.39913 -12.25041 -12.11585 -12.07936 -11.75502 -11.68283 -11.37838 -11.18258 -10.91021 -10.76183 -10.45930 -10.21881 -9.90699 -5.29613 -0.73775 -0.51338 0.26483 0.52905 0.98780 1.08553 1.45998 1.78370 2.05789 2.74050 3.19296 3.34412 3.50752 3.56785 3.63389 3.66624 3.76722 3.94417 3.99088 4.05097 4.14858 4.24082 4.29882 4.32035 4.33858 4.49153 4.53204 4.59049 4.61224 4.70749 4.72293 4.75403 4.86434 4.90848 4.95188 5.02826 5.03097 5.06285 5.10806 5.13251 5.18315 5.25291 5.31915 5.38600 5.49037 5.56195 5.90788 6.35034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.084 4.084 5 H 0.072 0.928 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.156 3.844 9 H 0.081 0.919 10 N -1.106 6.106 11 S 2.706 3.294 12 O -0.951 6.951 13 O -0.954 6.954 14 C -0.685 4.685 15 C -0.088 4.088 16 S 0.158 5.842 17 C -0.229 4.229 18 C -0.027 4.027 19 O -0.532 6.532 20 Si 0.655 3.345 21 C -0.042 4.042 22 C -0.140 4.140 23 C -0.116 4.116 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.419 0.581 36 H 0.185 0.815 37 H 0.126 0.874 38 H 0.380 0.620 39 H -0.231 1.231 40 H -0.237 1.237 41 H 0.157 0.843 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 1.508 4.619 7.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.090 0.910 6 C -0.155 4.155 7 C -0.163 4.163 8 C 0.049 3.951 9 H 0.099 0.901 10 N -0.868 5.868 11 S 2.792 3.208 12 O -0.941 6.941 13 O -0.944 6.944 14 C -0.785 4.785 15 C -0.227 4.227 16 S 0.422 5.578 17 C -0.347 4.347 18 C -0.141 4.141 19 O -0.337 6.337 20 Si 0.555 3.445 21 C -0.070 4.070 22 C -0.179 4.179 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.256 0.744 36 H 0.203 0.797 37 H 0.143 0.857 38 H 0.228 0.772 39 H -0.154 1.154 40 H -0.161 1.161 41 H 0.174 0.826 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.610 0.019 5.847 6.871 hybrid contribution -0.289 0.321 -1.758 1.810 sum -3.899 0.340 4.089 5.660 Atomic orbital electron populations 1.21904 0.95269 1.01812 1.01767 1.21151 0.95707 0.96257 0.98055 1.21907 1.01261 0.95903 1.01742 1.21252 0.95305 0.95426 0.98233 0.90970 1.21645 1.00918 0.95269 0.97699 1.21822 0.93629 1.01459 0.99433 1.20786 0.95298 0.93177 0.85837 0.90063 1.55657 1.47598 1.64245 1.19305 1.01715 0.72923 0.72899 0.73246 1.93610 1.56443 1.66678 1.77347 1.93612 1.84431 1.78910 1.37446 1.30092 1.19643 1.19023 1.09697 1.25935 0.98310 1.02187 0.96275 1.84370 1.59109 1.05261 1.09092 1.25068 1.11433 1.02039 0.96123 1.24465 0.86477 0.93941 1.09173 1.86549 1.17906 1.80179 1.49091 0.95138 0.85983 0.84473 0.78939 1.19598 0.96302 0.89920 1.01217 1.22085 1.02081 0.94623 0.99077 1.21623 0.94919 1.00717 0.98113 0.92826 0.92406 0.92732 0.91290 0.92323 0.92821 0.92730 0.91944 0.91111 0.91061 0.90374 0.74371 0.79732 0.85659 0.77195 1.15387 1.16149 0.82577 0.90674 0.90234 0.91818 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 8.84 37.16 0.33 0.56 16 2 C -0.09 0.14 2.51 -90.62 -0.23 -0.09 16 3 C -0.15 0.17 8.84 37.16 0.33 0.50 16 4 C -0.08 0.18 1.77 -90.62 -0.16 0.02 16 5 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 6 C -0.12 0.33 4.66 -26.73 -0.12 0.21 16 7 C -0.12 0.43 5.63 -26.73 -0.15 0.28 16 8 C 0.16 -0.40 2.98 -67.93 -0.20 -0.60 16 9 H 0.08 -0.30 7.34 -51.93 -0.38 -0.68 16 10 N -1.11 1.80 4.74 -4.89 -0.02 1.77 16 11 S 2.71 3.39 5.71 -107.50 -0.61 2.78 16 12 O -0.95 -3.42 16.91 -57.17 -0.97 -4.39 16 13 O -0.95 -4.41 17.63 -57.17 -1.01 -5.42 16 14 C -0.69 -0.19 5.73 -41.21 -0.24 -0.43 16 15 C -0.09 0.09 10.19 29.04 0.30 0.39 16 16 S 0.16 -0.23 20.58 -107.50 -2.21 -2.45 16 17 C -0.23 0.07 5.72 -36.00 -0.21 -0.14 16 18 C -0.03 0.02 2.96 36.01 0.11 0.13 16 19 O -0.53 0.36 12.86 -35.23 -0.45 -0.09 16 20 Si 0.66 -1.06 30.97 -169.99 -5.26 -6.33 16 21 C -0.04 -0.03 9.56 -41.21 -0.39 -0.42 16 22 C -0.14 0.23 5.64 -26.71 -0.15 0.08 16 23 C -0.12 0.18 4.70 -26.71 -0.13 0.05 16 24 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 25 H 0.06 -0.11 6.43 -51.93 -0.33 -0.44 16 26 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 27 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.06 -0.06 6.43 -51.93 -0.33 -0.40 16 29 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.06 -0.18 6.51 -51.93 -0.34 -0.51 16 32 H 0.07 -0.20 6.43 -51.93 -0.33 -0.53 16 33 H 0.07 -0.26 8.14 -51.93 -0.42 -0.69 16 34 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 35 H 0.42 -1.10 6.82 -34.47 -0.23 -1.33 16 36 H 0.19 -0.57 8.01 -52.49 -0.42 -0.99 16 37 H 0.13 -0.06 7.96 -51.93 -0.41 -0.47 16 38 H 0.38 -1.79 8.70 45.56 0.40 -1.39 16 39 H -0.23 -0.26 7.11 56.52 0.40 0.15 16 40 H -0.24 -0.13 7.11 56.52 0.40 0.28 16 41 H 0.16 0.12 7.97 -52.49 -0.42 -0.29 16 42 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 43 H 0.08 -0.01 7.64 -51.93 -0.40 -0.41 16 44 H 0.06 -0.07 7.45 -51.93 -0.39 -0.45 16 45 H 0.07 -0.08 6.43 -51.93 -0.33 -0.42 16 LS Contribution 370.73 15.07 5.59 5.59 Total: 0.00 -8.11 370.73 -12.80 -20.91 By element: Atomic # 1 Polarization: -5.98 SS G_CDS: -6.93 Total: -12.91 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.92 Total: 0.54 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -0.02 Total: 1.77 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -2.43 Total: -9.90 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: -5.26 Total: -6.33 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.83 Total: 0.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -8.11 -12.80 -20.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.207 kcal (2) G-P(sol) polarization free energy of solvation -8.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds