Wall clock time and date at job start Mon Mar 8 2021 12:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 C 1.53001 * 109.47005 * 119.99866 * 2 1 3 5 5 H 1.09004 * 109.47096 * 300.00297 * 4 2 1 6 6 C 1.52999 * 109.47434 * 60.00121 * 4 2 1 7 7 C 1.52998 * 109.47476 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46966 * 299.99952 * 7 6 4 9 9 H 1.08998 * 109.47628 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46891 * 299.99924 * 8 7 6 11 11 S 1.65603 * 120.00136 * 214.99755 * 10 8 7 12 12 O 1.42099 * 106.40023 * 311.46551 * 11 10 8 13 13 O 1.42097 * 106.40180 * 178.54223 * 11 10 8 14 14 C 1.76200 * 107.21581 * 65.00193 * 11 10 8 15 15 C 1.33395 * 122.53893 * 270.25812 * 14 11 10 16 16 S 1.75886 * 109.59043 * 180.24204 * 15 14 11 17 17 C 1.75885 * 90.97065 * 359.73076 * 16 15 14 18 18 C 1.50701 * 125.19989 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47143 * 119.97217 * 18 17 16 20 20 Si 1.86301 * 109.47393 * 359.96971 * 18 17 16 21 21 C 1.33388 * 109.59458 * 359.97438 * 17 16 15 22 22 C 1.52999 * 109.47355 * 59.99688 * 8 7 6 23 23 C 1.53000 * 109.47289 * 180.02562 * 4 2 1 24 24 H 1.09003 * 109.46865 * 60.00576 * 1 2 3 25 25 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47293 * 300.00114 * 1 2 3 27 27 H 1.08996 * 109.47701 * 239.99762 * 2 1 3 28 28 H 1.08998 * 109.47084 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46935 * 299.99743 * 3 2 1 30 30 H 1.09004 * 109.46888 * 59.99619 * 3 2 1 31 31 H 1.08998 * 109.46939 * 59.99580 * 6 4 2 32 32 H 1.09001 * 109.47146 * 300.00050 * 6 4 2 33 33 H 1.09000 * 109.46939 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47681 * 59.99665 * 7 6 4 35 35 H 0.97000 * 120.00174 * 35.00229 * 10 8 7 36 36 H 1.07998 * 125.20353 * 359.97188 * 15 14 11 37 37 H 1.08999 * 109.46974 * 239.96677 * 18 17 16 38 38 H 0.96701 * 114.00226 * 299.99971 * 19 18 17 39 39 H 1.48507 * 109.99818 * 180.02562 * 20 18 17 40 40 H 1.48492 * 110.00002 * 301.32100 * 20 18 17 41 41 H 1.08002 * 122.53671 * 179.97438 * 21 17 16 42 42 H 1.09004 * 109.46602 * 60.00211 * 22 8 7 43 43 H 1.08998 * 109.47029 * 180.02562 * 22 8 7 44 44 H 1.08996 * 109.47359 * 299.99860 * 23 4 2 45 45 H 1.09000 * 109.47185 * 60.00134 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 2.0394 -2.8848 2.4989 8 6 3.5694 -2.8848 2.4996 9 1 3.9325 -3.3988 3.3895 10 7 4.0582 -3.5756 1.3037 11 16 5.4418 -4.4825 1.3787 12 8 6.4172 -3.6738 2.0221 13 8 5.6260 -5.0413 0.0852 14 6 5.1216 -5.8336 2.4634 15 6 5.3426 -5.7668 3.7773 16 16 4.9145 -7.2997 4.5259 17 6 4.4380 -7.9619 2.9677 18 6 3.9081 -9.3543 2.7409 19 8 2.5962 -9.2791 2.1793 20 14 3.8371 -10.2641 4.3651 21 6 4.6165 -7.0428 2.0176 22 6 4.0795 -1.4423 2.4995 23 6 3.5699 -0.7207 1.2497 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.8933 -2.6776 0.3594 32 1 0.4400 -2.1638 1.2493 33 1 1.6765 -3.9126 2.4987 34 1 1.6758 -2.3709 3.3887 35 1 3.5715 -3.5018 0.4679 36 1 5.7295 -4.9050 4.3005 37 1 4.5670 -9.8865 2.0548 38 1 1.9554 -8.8173 2.7371 39 1 3.3167 -11.6389 4.1548 40 1 5.1899 -10.3213 4.9747 41 1 4.3894 -7.2298 0.9784 42 1 3.7158 -0.9283 3.3893 43 1 5.1695 -1.4423 2.4995 44 1 3.9337 -1.2343 0.3598 45 1 3.9329 0.3071 1.2499 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623132_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:22 Heat of formation + Delta-G solvation = -90.116371 kcal Electronic energy + Delta-G solvation = -27353.120500 eV Core-core repulsion = 23590.029774 eV Total energy + Delta-G solvation = -3763.090726 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.51320 -39.49427 -38.40040 -37.53556 -37.02635 -36.89009 -33.20102 -31.83972 -31.78093 -29.42132 -27.97878 -27.22505 -24.93093 -23.93943 -23.24904 -21.51484 -21.04040 -20.69659 -19.85960 -19.04814 -18.75424 -17.86666 -17.64771 -17.08211 -16.48526 -16.31741 -15.87173 -15.48856 -15.30589 -15.22782 -14.91605 -14.73499 -14.39962 -14.28778 -14.15625 -14.12738 -13.94047 -13.64053 -13.36528 -13.32420 -13.22364 -13.04705 -12.92267 -12.58595 -12.56729 -12.52430 -12.26769 -12.19216 -11.97379 -11.91674 -11.66706 -11.63612 -11.23846 -11.04431 -10.76080 -10.68715 -10.32874 -10.16072 -9.83131 -5.19384 -0.77733 -0.48336 0.33561 0.58168 0.98154 1.16751 1.53506 1.84836 2.06966 2.66983 3.22023 3.42643 3.64093 3.70156 3.78277 3.83660 3.89457 4.07791 4.16110 4.19365 4.21914 4.36493 4.37506 4.45311 4.50862 4.63750 4.68629 4.70886 4.73925 4.83429 4.84845 4.87494 4.90397 5.03018 5.05398 5.09889 5.16690 5.21908 5.26132 5.31549 5.33965 5.39728 5.44288 5.52472 5.62788 5.70465 6.04981 6.65910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.074 0.926 6 C -0.119 4.119 7 C -0.119 4.119 8 C 0.151 3.849 9 H 0.097 0.903 10 N -1.097 6.097 11 S 2.720 3.280 12 O -0.978 6.978 13 O -0.994 6.994 14 C -0.692 4.692 15 C -0.088 4.088 16 S 0.196 5.804 17 C -0.235 4.235 18 C -0.035 4.035 19 O -0.547 6.547 20 Si 0.737 3.263 21 C -0.057 4.057 22 C -0.140 4.140 23 C -0.118 4.118 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.424 0.576 36 H 0.206 0.794 37 H 0.118 0.882 38 H 0.398 0.602 39 H -0.270 1.270 40 H -0.263 1.263 41 H 0.147 0.853 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 1.483 6.224 8.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.157 4.157 7 C -0.158 4.158 8 C 0.045 3.955 9 H 0.115 0.885 10 N -0.860 5.860 11 S 2.809 3.191 12 O -0.968 6.968 13 O -0.985 6.985 14 C -0.793 4.793 15 C -0.227 4.227 16 S 0.459 5.541 17 C -0.353 4.353 18 C -0.147 4.147 19 O -0.355 6.355 20 Si 0.639 3.361 21 C -0.086 4.086 22 C -0.180 4.180 23 C -0.155 4.155 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.262 0.738 36 H 0.223 0.777 37 H 0.135 0.865 38 H 0.248 0.752 39 H -0.196 1.196 40 H -0.189 1.189 41 H 0.165 0.835 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.546 0.036 7.428 8.708 hybrid contribution -0.018 0.310 -2.234 2.256 sum -4.563 0.346 5.194 6.922 Atomic orbital electron populations 1.21887 0.95067 1.02078 1.01536 1.21148 0.95840 0.95980 0.98231 1.21906 1.01113 0.96229 1.01568 1.21185 0.94612 0.95924 0.97855 0.90731 1.21660 1.01138 0.94738 0.98124 1.21807 0.92522 1.02006 0.99466 1.20990 0.96130 0.92612 0.85816 0.88489 1.55419 1.46751 1.63755 1.20107 1.00942 0.73073 0.72773 0.72333 1.93571 1.58103 1.67520 1.77598 1.93553 1.85395 1.79716 1.39797 1.29796 1.21063 1.18426 1.10006 1.26269 0.97279 1.03220 0.95942 1.84249 1.58040 1.04265 1.07501 1.25185 1.11158 1.02027 0.96887 1.24610 0.86519 0.93862 1.09700 1.86512 1.18254 1.80586 1.50130 0.94232 0.83298 0.81649 0.76915 1.19609 0.97256 0.90528 1.01179 1.22092 1.01026 0.95400 0.99439 1.21622 0.95524 1.00372 0.98001 0.93368 0.91887 0.92634 0.91898 0.92567 0.93245 0.92625 0.92130 0.90725 0.90243 0.89216 0.73771 0.77732 0.86525 0.75194 1.19566 1.18894 0.83519 0.89375 0.91968 0.92650 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 8.84 71.98 0.64 1.10 16 2 C -0.09 0.26 2.51 -10.79 -0.03 0.23 16 3 C -0.15 0.26 8.84 71.98 0.64 0.89 16 4 C -0.08 0.35 1.77 -10.79 -0.02 0.33 16 5 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 6 C -0.12 0.76 4.66 30.59 0.14 0.90 16 7 C -0.12 0.98 5.63 30.59 0.17 1.16 16 8 C 0.15 -0.87 2.98 44.99 0.13 -0.73 16 9 H 0.10 -0.85 7.34 -2.39 -0.02 -0.87 16 10 N -1.10 3.12 4.74 -169.38 -0.80 2.32 16 11 S 2.72 9.54 5.71 -56.49 -0.32 9.22 16 12 O -0.98 -7.95 16.91 -128.00 -2.16 -10.11 16 13 O -0.99 -11.07 17.63 -128.00 -2.26 -13.33 16 14 C -0.69 -0.44 5.73 21.22 0.12 -0.32 16 15 C -0.09 0.27 10.19 66.72 0.68 0.95 16 16 S 0.20 -0.84 20.58 -56.49 -1.16 -2.00 16 17 C -0.23 0.22 5.72 24.59 0.14 0.36 16 18 C -0.03 0.06 2.96 71.24 0.21 0.27 16 19 O -0.55 0.85 12.86 -148.98 -1.92 -1.07 16 20 Si 0.74 -2.67 30.97 68.60 2.12 -0.55 16 21 C -0.06 -0.10 9.56 21.22 0.20 0.10 16 22 C -0.14 0.48 5.64 30.61 0.17 0.66 16 23 C -0.12 0.30 4.70 30.61 0.14 0.45 16 24 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.06 -0.26 6.43 -2.39 -0.02 -0.27 16 26 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.06 -0.07 6.43 -2.39 -0.02 -0.09 16 29 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.06 -0.35 6.51 -2.39 -0.02 -0.37 16 32 H 0.07 -0.50 6.43 -2.39 -0.02 -0.51 16 33 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.42 -1.92 6.82 -96.75 -0.66 -2.58 16 36 H 0.21 -1.58 8.01 -2.91 -0.02 -1.61 16 37 H 0.12 -0.02 7.96 -2.39 -0.02 -0.04 16 38 H 0.40 -4.07 8.70 -74.06 -0.64 -4.71 16 39 H -0.27 -0.76 7.11 99.48 0.71 -0.05 16 40 H -0.26 -0.16 7.11 99.48 0.71 0.55 16 41 H 0.15 0.46 7.97 -2.91 -0.02 0.44 16 42 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.06 0.03 7.64 -2.39 -0.02 0.01 16 44 H 0.05 -0.06 7.45 -2.39 -0.02 -0.07 16 45 H 0.06 -0.10 6.43 -2.39 -0.02 -0.12 16 Total: 0.00 -19.25 370.73 -3.41 -22.67 By element: Atomic # 1 Polarization: -13.23 SS G_CDS: -0.26 Total: -13.49 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 3.35 Total: 6.34 kcal Atomic # 7 Polarization: 3.12 SS G_CDS: -0.80 Total: 2.32 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -6.34 Total: -24.50 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.12 Total: -0.55 kcal Atomic # 16 Polarization: 8.70 SS G_CDS: -1.48 Total: 7.22 kcal Total: -19.25 -3.41 -22.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.451 kcal (2) G-P(sol) polarization free energy of solvation -19.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds