Wall clock time and date at job start Mon Mar 8 2021 12:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33385 * 125.20663 * 2 1 4 4 C 1.50706 * 122.53779 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47158 * 317.81130 * 4 3 2 6 6 Si 1.86299 * 109.47197 * 77.81338 * 4 3 2 7 7 C 1.38424 * 114.92685 * 180.20799 * 3 2 1 8 8 S 1.76191 * 122.54302 * 179.76199 * 7 3 2 9 9 O 1.42099 * 106.40341 * 154.26934 * 8 7 3 10 10 O 1.42096 * 106.40524 * 21.34422 * 8 7 3 11 11 N 1.65603 * 107.21765 * 267.80637 * 8 7 3 12 12 C 1.46502 * 119.99962 * 63.64937 * 11 8 7 13 13 H 1.08996 * 109.46853 * 25.58610 * 12 11 8 14 14 C 1.53002 * 109.47009 * 145.58726 * 12 11 8 15 15 C 1.53005 * 109.46970 * 60.00152 * 14 12 11 16 16 C 1.53003 * 109.47300 * 59.99828 * 15 14 12 17 17 H 1.08999 * 109.46927 * 59.99897 * 16 15 14 18 18 C 1.52995 * 109.46784 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46784 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47371 * 299.99555 * 18 16 15 21 21 C 1.53004 * 109.46937 * 299.99807 * 16 15 14 22 22 C 1.53003 * 109.47073 * 265.58783 * 12 11 8 23 23 C 1.33390 * 114.91265 * 359.49689 * 7 3 2 24 24 C 1.50707 * 125.19820 * 180.24659 * 23 7 3 25 25 S 1.75882 * 109.59795 * 0.26529 * 23 7 3 26 26 H 1.09007 * 109.47316 * 185.39363 * 1 2 3 27 27 H 1.09006 * 109.47031 * 305.39205 * 1 2 3 28 28 H 1.08999 * 109.47477 * 65.38857 * 1 2 3 29 29 H 1.09003 * 109.47350 * 197.81250 * 4 3 2 30 30 H 0.96698 * 114.00310 * 180.02562 * 5 4 3 31 31 H 1.48505 * 109.99839 * 303.73455 * 6 4 3 32 32 H 1.48496 * 110.00172 * 65.05710 * 6 4 3 33 33 H 0.97002 * 119.99802 * 243.64444 * 11 8 7 34 34 H 1.08996 * 109.47181 * 299.99989 * 14 12 11 35 35 H 1.09001 * 109.46814 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.46667 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47215 * 299.99901 * 15 14 12 38 38 H 1.08999 * 109.47438 * 60.00252 * 18 16 15 39 39 H 1.08993 * 109.47575 * 60.00050 * 19 18 16 40 40 H 1.09006 * 109.47486 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47140 * 299.99605 * 19 18 16 42 42 H 1.09003 * 109.47131 * 60.00422 * 20 18 16 43 43 H 1.09005 * 109.47365 * 179.97438 * 20 18 16 44 44 H 1.08999 * 109.47408 * 300.00715 * 20 18 16 45 45 H 1.08996 * 109.46868 * 179.97438 * 21 16 15 46 46 H 1.08997 * 109.46916 * 300.00018 * 21 16 15 47 47 H 1.08995 * 109.47170 * 180.02562 * 22 12 11 48 48 H 1.09002 * 109.47140 * 59.99652 * 22 12 11 49 49 H 1.09003 * 109.47204 * 89.99883 * 24 23 7 50 50 H 1.09001 * 109.46811 * 209.99906 * 24 23 7 51 51 H 1.08996 * 109.47387 * 329.99796 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 0.6012 2.5472 -0.9058 6 14 1.1262 2.9194 1.7160 7 6 3.6380 0.8428 -0.0046 8 16 4.8356 2.1351 -0.0116 9 8 6.0112 1.5959 0.5769 10 8 4.1790 3.2935 0.4847 11 7 5.2073 2.4504 -1.5943 12 6 4.1767 2.9627 -2.5007 13 1 3.4154 3.4889 -1.9249 14 6 4.8136 3.9260 -3.5045 15 6 5.8822 3.1873 -4.3127 16 6 5.2378 2.0204 -5.0639 17 1 4.4710 2.4017 -5.7383 18 6 6.3064 1.2822 -5.8725 19 6 5.6621 0.1150 -6.6232 20 6 6.9426 2.2457 -6.8764 21 6 4.6010 1.0572 -4.0600 22 6 3.5323 1.7959 -3.2519 23 6 3.9750 -0.4478 0.0024 24 6 5.3860 -0.9771 0.0047 25 16 2.5208 -1.4372 0.0078 26 1 -0.3634 -1.0232 0.0966 27 1 -0.3633 0.5952 0.8378 28 1 -0.3634 0.4280 -0.9343 29 1 2.4732 3.1914 -0.3148 30 1 0.1840 3.4180 -0.9577 31 1 0.1447 1.9114 2.1914 32 1 2.2846 2.9773 2.6433 33 1 6.1074 2.2958 -1.9211 34 1 5.2726 4.7572 -2.9694 35 1 4.0468 4.3068 -4.1792 36 1 6.3356 3.8734 -5.0281 37 1 6.6490 2.8060 -3.6383 38 1 7.0734 0.9010 -5.1985 39 1 4.8948 0.4957 -7.2972 40 1 6.4234 -0.4113 -7.1990 41 1 5.2092 -0.5714 -5.9077 42 1 7.4017 3.0770 -6.3413 43 1 7.7042 1.7199 -7.4522 44 1 6.1755 2.6269 -7.5505 45 1 4.1416 0.2262 -4.5952 46 1 5.3678 0.6760 -3.3857 47 1 2.7659 2.1771 -3.9266 48 1 3.0787 1.1096 -2.5367 49 1 5.7266 -1.0991 1.0330 50 1 5.4133 -1.9408 -0.5039 51 1 6.0386 -0.2744 -0.5132 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623132_15065288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:27 Heat of formation + Delta-G solvation = -88.569431 kcal Electronic energy + Delta-G solvation = -33553.104645 eV Core-core repulsion = 29479.005761 eV Total energy + Delta-G solvation = -4074.098884 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.142 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.75604 -40.10237 -38.48844 -37.15468 -37.02177 -36.90315 -34.17295 -33.30691 -31.98658 -30.88094 -29.55275 -28.10696 -28.02583 -25.84301 -24.09001 -23.44006 -23.07135 -21.29007 -20.91963 -20.34574 -19.71921 -19.22841 -18.64408 -17.77815 -17.42290 -17.02046 -16.54637 -16.16368 -15.94178 -15.47058 -15.38799 -15.30326 -15.15443 -14.80565 -14.51860 -14.44671 -14.34819 -14.26686 -14.19272 -13.98349 -13.70813 -13.55006 -13.46538 -13.33481 -13.20523 -13.17581 -13.01828 -12.77723 -12.71736 -12.60412 -12.53180 -12.40500 -12.11968 -12.08953 -11.93283 -11.77648 -11.67442 -11.39660 -11.38402 -11.18628 -10.91241 -10.49277 -10.43322 -9.94839 -9.29001 -4.93315 -0.72789 -0.38006 0.39966 0.74700 0.86484 1.54844 1.80567 2.03903 2.17286 2.67909 3.17873 3.27003 3.54987 3.60136 3.63834 3.68789 3.85116 3.93309 4.01370 4.07006 4.08854 4.18531 4.21761 4.30535 4.32862 4.33240 4.43275 4.49710 4.53286 4.58151 4.61700 4.66393 4.71171 4.72014 4.73518 4.74407 4.88901 4.92468 4.93257 5.01568 5.05414 5.05995 5.11280 5.12402 5.15340 5.17637 5.23769 5.29932 5.30556 5.37654 5.47048 5.54378 5.89819 6.63777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.161 4.161 3 C -0.040 4.040 4 C -0.071 4.071 5 O -0.544 6.544 6 Si 0.690 3.310 7 C -0.683 4.683 8 S 2.703 3.297 9 O -0.954 6.954 10 O -0.949 6.949 11 N -1.106 6.106 12 C 0.151 3.849 13 H 0.093 0.907 14 C -0.122 4.122 15 C -0.118 4.118 16 C -0.083 4.083 17 H 0.072 0.928 18 C -0.092 4.092 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.114 4.114 22 C -0.138 4.138 23 C -0.050 4.050 24 C -0.109 4.109 25 S 0.151 5.849 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.383 0.617 31 H -0.254 1.254 32 H -0.253 1.253 33 H 0.418 0.582 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 0.969 -4.254 4.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.279 4.279 3 C -0.049 4.049 4 C -0.183 4.183 5 O -0.350 6.350 6 Si 0.590 3.410 7 C -0.782 4.782 8 S 2.790 3.210 9 O -0.944 6.944 10 O -0.938 6.938 11 N -0.868 5.868 12 C 0.044 3.956 13 H 0.110 0.890 14 C -0.161 4.161 15 C -0.156 4.156 16 C -0.101 4.101 17 H 0.091 0.909 18 C -0.111 4.111 19 C -0.208 4.208 20 C -0.208 4.208 21 C -0.151 4.151 22 C -0.177 4.177 23 C -0.171 4.171 24 C -0.168 4.168 25 S 0.417 5.583 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.231 0.769 31 H -0.179 1.179 32 H -0.178 1.178 33 H 0.255 0.745 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.101 0.899 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.737 -1.065 -2.688 3.373 hybrid contribution 0.598 0.373 -0.746 1.026 sum -1.139 -0.692 -3.434 3.684 Atomic orbital electron populations 1.20482 0.86723 1.02267 1.04654 1.24440 1.00644 0.94385 1.08469 1.17471 0.89718 0.94886 1.02874 1.24930 0.92811 0.94595 1.05969 1.86409 1.46836 1.37165 1.64608 0.95504 0.82673 0.87448 0.75333 1.29400 1.11574 1.13535 1.23735 1.01642 0.73094 0.73673 0.72568 1.93605 1.46055 1.79976 1.74781 1.93496 1.75802 1.46795 1.77753 1.55616 1.20233 1.81428 1.29531 1.20925 0.88915 0.94529 0.91223 0.88951 1.21786 0.99228 0.97605 0.97483 1.21660 0.97773 0.97376 0.98772 1.21238 0.97278 0.95194 0.96403 0.90949 1.21143 0.97322 0.95695 0.96928 1.21903 1.00706 0.97953 1.00203 1.21906 1.00588 0.99324 0.98959 1.21595 0.98111 0.98036 0.97399 1.22057 0.98211 0.97699 0.99695 1.24478 1.00659 0.94876 0.97081 1.20873 0.88208 1.02409 1.05287 1.84424 0.95340 1.08920 1.69583 0.91951 0.90298 0.88580 0.87909 0.76904 1.17924 1.17754 0.74531 0.90853 0.90243 0.91061 0.92060 0.91374 0.92708 0.92836 0.92463 0.92362 0.92832 0.92699 0.91579 0.92042 0.90493 0.91129 0.88203 0.89891 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.08 8.86 36.00 0.32 0.23 16 2 C -0.16 -0.37 6.19 -36.01 -0.22 -0.60 16 3 C -0.04 -0.10 3.44 -106.25 -0.37 -0.47 16 4 C -0.07 -0.08 2.26 36.01 0.08 0.00 16 5 O -0.54 0.57 10.57 -35.23 -0.37 0.20 16 6 Si 0.69 1.13 30.76 -169.99 -5.23 -4.10 16 7 C -0.68 -1.65 4.80 -41.21 -0.20 -1.85 16 8 S 2.70 6.61 5.25 -107.50 -0.56 6.05 16 9 O -0.95 -4.27 15.21 -57.17 -0.87 -5.14 16 10 O -0.95 -3.94 13.24 -57.17 -0.76 -4.69 16 11 N -1.11 0.81 4.73 -4.89 -0.02 0.79 16 12 C 0.15 -0.22 3.10 -67.93 -0.21 -0.43 16 13 H 0.09 -0.13 5.79 -51.93 -0.30 -0.43 16 14 C -0.12 0.28 5.63 -26.73 -0.15 0.13 16 15 C -0.12 0.28 4.67 -26.73 -0.12 0.15 16 16 C -0.08 0.17 1.77 -90.62 -0.16 0.00 16 17 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 18 C -0.09 0.14 2.51 -90.62 -0.23 -0.08 16 19 C -0.15 0.18 8.84 37.16 0.33 0.51 16 20 C -0.15 0.22 8.84 37.15 0.33 0.55 16 21 C -0.11 0.18 4.69 -26.73 -0.13 0.06 16 22 C -0.14 0.18 5.64 -26.73 -0.15 0.03 16 23 C -0.05 -0.08 6.49 -36.00 -0.23 -0.32 16 24 C -0.11 0.00 9.11 36.01 0.33 0.32 16 25 S 0.15 0.20 23.31 -107.50 -2.51 -2.31 16 26 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 27 H 0.08 0.12 5.75 -51.93 -0.30 -0.18 16 28 H 0.10 0.05 7.13 -51.93 -0.37 -0.32 16 29 H 0.10 0.08 3.10 -51.93 -0.16 -0.08 16 30 H 0.38 -2.10 8.74 45.56 0.40 -1.70 16 31 H -0.25 -0.82 5.96 56.52 0.34 -0.48 16 32 H -0.25 -1.39 7.11 56.52 0.40 -0.99 16 33 H 0.42 -0.90 6.83 -34.47 -0.24 -1.14 16 34 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.07 -0.17 6.43 -51.93 -0.33 -0.50 16 37 H 0.06 -0.15 6.50 -51.93 -0.34 -0.49 16 38 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 40 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 41 H 0.06 -0.07 6.43 -51.93 -0.33 -0.40 16 42 H 0.06 -0.10 6.43 -51.93 -0.33 -0.43 16 43 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 44 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 45 H 0.07 -0.08 6.43 -51.93 -0.33 -0.41 16 46 H 0.06 -0.10 7.46 -51.93 -0.39 -0.48 16 47 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 48 H 0.07 0.00 6.21 -51.93 -0.32 -0.32 16 49 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 50 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 51 H 0.09 -0.02 6.34 -51.93 -0.33 -0.35 16 LS Contribution 390.27 15.07 5.88 5.88 Total: 0.00 -6.69 390.27 -13.24 -19.93 By element: Atomic # 1 Polarization: -6.84 SS G_CDS: -8.02 Total: -14.85 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -0.78 Total: -1.75 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -0.02 Total: 0.79 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -2.00 Total: -9.63 kcal Atomic # 14 Polarization: 1.13 SS G_CDS: -5.23 Total: -4.10 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -3.07 Total: 3.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -6.69 -13.24 -19.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_15065288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.640 kcal (2) G-P(sol) polarization free energy of solvation -6.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds