Wall clock time and date at job start Mon Mar 8 2021 12:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33385 * 125.20663 * 2 1 4 4 C 1.50706 * 122.53779 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47158 * 317.81130 * 4 3 2 6 6 Si 1.86299 * 109.47197 * 77.81338 * 4 3 2 7 7 C 1.38424 * 114.92685 * 180.20799 * 3 2 1 8 8 S 1.76191 * 122.54302 * 179.76199 * 7 3 2 9 9 O 1.42099 * 106.40341 * 154.26934 * 8 7 3 10 10 O 1.42096 * 106.40524 * 21.34422 * 8 7 3 11 11 N 1.65603 * 107.21765 * 267.80637 * 8 7 3 12 12 C 1.46502 * 119.99962 * 63.64937 * 11 8 7 13 13 H 1.08996 * 109.46853 * 25.58610 * 12 11 8 14 14 C 1.53002 * 109.47009 * 145.58726 * 12 11 8 15 15 C 1.53005 * 109.46970 * 60.00152 * 14 12 11 16 16 C 1.53003 * 109.47300 * 59.99828 * 15 14 12 17 17 H 1.08999 * 109.46927 * 59.99897 * 16 15 14 18 18 C 1.52995 * 109.46784 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46784 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47371 * 299.99555 * 18 16 15 21 21 C 1.53004 * 109.46937 * 299.99807 * 16 15 14 22 22 C 1.53003 * 109.47073 * 265.58783 * 12 11 8 23 23 C 1.33390 * 114.91265 * 359.49689 * 7 3 2 24 24 C 1.50707 * 125.19820 * 180.24659 * 23 7 3 25 25 S 1.75882 * 109.59795 * 0.26529 * 23 7 3 26 26 H 1.09007 * 109.47316 * 185.39363 * 1 2 3 27 27 H 1.09006 * 109.47031 * 305.39205 * 1 2 3 28 28 H 1.08999 * 109.47477 * 65.38857 * 1 2 3 29 29 H 1.09003 * 109.47350 * 197.81250 * 4 3 2 30 30 H 0.96698 * 114.00310 * 180.02562 * 5 4 3 31 31 H 1.48505 * 109.99839 * 303.73455 * 6 4 3 32 32 H 1.48496 * 110.00172 * 65.05710 * 6 4 3 33 33 H 0.97002 * 119.99802 * 243.64444 * 11 8 7 34 34 H 1.08996 * 109.47181 * 299.99989 * 14 12 11 35 35 H 1.09001 * 109.46814 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.46667 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47215 * 299.99901 * 15 14 12 38 38 H 1.08999 * 109.47438 * 60.00252 * 18 16 15 39 39 H 1.08993 * 109.47575 * 60.00050 * 19 18 16 40 40 H 1.09006 * 109.47486 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47140 * 299.99605 * 19 18 16 42 42 H 1.09003 * 109.47131 * 60.00422 * 20 18 16 43 43 H 1.09005 * 109.47365 * 179.97438 * 20 18 16 44 44 H 1.08999 * 109.47408 * 300.00715 * 20 18 16 45 45 H 1.08996 * 109.46868 * 179.97438 * 21 16 15 46 46 H 1.08997 * 109.46916 * 300.00018 * 21 16 15 47 47 H 1.08995 * 109.47170 * 180.02562 * 22 12 11 48 48 H 1.09002 * 109.47140 * 59.99652 * 22 12 11 49 49 H 1.09003 * 109.47204 * 89.99883 * 24 23 7 50 50 H 1.09001 * 109.46811 * 209.99906 * 24 23 7 51 51 H 1.08996 * 109.47387 * 329.99796 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 0.6012 2.5472 -0.9058 6 14 1.1262 2.9194 1.7160 7 6 3.6380 0.8428 -0.0046 8 16 4.8356 2.1351 -0.0116 9 8 6.0112 1.5959 0.5769 10 8 4.1790 3.2935 0.4847 11 7 5.2073 2.4504 -1.5943 12 6 4.1767 2.9627 -2.5007 13 1 3.4154 3.4889 -1.9249 14 6 4.8136 3.9260 -3.5045 15 6 5.8822 3.1873 -4.3127 16 6 5.2378 2.0204 -5.0639 17 1 4.4710 2.4017 -5.7383 18 6 6.3064 1.2822 -5.8725 19 6 5.6621 0.1150 -6.6232 20 6 6.9426 2.2457 -6.8764 21 6 4.6010 1.0572 -4.0600 22 6 3.5323 1.7959 -3.2519 23 6 3.9750 -0.4478 0.0024 24 6 5.3860 -0.9771 0.0047 25 16 2.5208 -1.4372 0.0078 26 1 -0.3634 -1.0232 0.0966 27 1 -0.3633 0.5952 0.8378 28 1 -0.3634 0.4280 -0.9343 29 1 2.4732 3.1914 -0.3148 30 1 0.1840 3.4180 -0.9577 31 1 0.1447 1.9114 2.1914 32 1 2.2846 2.9773 2.6433 33 1 6.1074 2.2958 -1.9211 34 1 5.2726 4.7572 -2.9694 35 1 4.0468 4.3068 -4.1792 36 1 6.3356 3.8734 -5.0281 37 1 6.6490 2.8060 -3.6383 38 1 7.0734 0.9010 -5.1985 39 1 4.8948 0.4957 -7.2972 40 1 6.4234 -0.4113 -7.1990 41 1 5.2092 -0.5714 -5.9077 42 1 7.4017 3.0770 -6.3413 43 1 7.7042 1.7199 -7.4522 44 1 6.1755 2.6269 -7.5505 45 1 4.1416 0.2262 -4.5952 46 1 5.3678 0.6760 -3.3857 47 1 2.7659 2.1771 -3.9266 48 1 3.0787 1.1096 -2.5367 49 1 5.7266 -1.0991 1.0330 50 1 5.4133 -1.9408 -0.5039 51 1 6.0386 -0.2744 -0.5132 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623132_15065288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:26 Heat of formation + Delta-G solvation = -84.370788 kcal Electronic energy + Delta-G solvation = -33552.922578 eV Core-core repulsion = 29479.005761 eV Total energy + Delta-G solvation = -4073.916817 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.142 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.67621 -40.15211 -38.71416 -37.16570 -37.13918 -36.93548 -34.23447 -33.24717 -31.83963 -30.93591 -29.45329 -28.07448 -27.99488 -25.94286 -23.97395 -23.32976 -23.11824 -21.29018 -20.83202 -20.38071 -19.77490 -19.30912 -18.74050 -17.79166 -17.48697 -17.05801 -16.51325 -16.28311 -15.98157 -15.51358 -15.36258 -15.23779 -15.14874 -14.71740 -14.52082 -14.43586 -14.38833 -14.30517 -14.16620 -14.09403 -13.75508 -13.61282 -13.52545 -13.39814 -13.33570 -13.12808 -13.05590 -12.86464 -12.66969 -12.64158 -12.56553 -12.28319 -12.15451 -11.99195 -11.93733 -11.79559 -11.65586 -11.53824 -11.25913 -11.08901 -10.79186 -10.51244 -10.37143 -10.04796 -9.39282 -5.11749 -0.87444 -0.50512 0.30265 0.62898 0.72309 1.41638 1.59098 1.92405 1.99487 2.52205 3.08159 3.21203 3.61461 3.67865 3.72940 3.79387 3.82598 4.03601 4.05008 4.09583 4.13755 4.20379 4.27387 4.34428 4.41347 4.44768 4.48405 4.57895 4.61132 4.65199 4.66364 4.69016 4.72687 4.82054 4.82720 4.84609 4.86886 5.01700 5.04122 5.07153 5.07696 5.15182 5.18648 5.21470 5.25739 5.28357 5.31103 5.36541 5.42343 5.50306 5.60616 5.68374 5.99791 6.93606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.177 4.177 3 C -0.054 4.054 4 C -0.065 4.065 5 O -0.543 6.543 6 Si 0.746 3.254 7 C -0.694 4.694 8 S 2.709 3.291 9 O -0.979 6.979 10 O -0.970 6.970 11 N -1.094 6.094 12 C 0.148 3.852 13 H 0.093 0.907 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.076 4.076 17 H 0.071 0.929 18 C -0.091 4.091 19 C -0.150 4.150 20 C -0.150 4.150 21 C -0.112 4.112 22 C -0.133 4.133 23 C -0.053 4.053 24 C -0.115 4.115 25 S 0.167 5.833 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.404 0.596 31 H -0.275 1.275 32 H -0.310 1.310 33 H 0.425 0.575 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 1.023 -5.474 5.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.295 4.295 3 C -0.064 4.064 4 C -0.178 4.178 5 O -0.353 6.353 6 Si 0.652 3.348 7 C -0.794 4.794 8 S 2.798 3.202 9 O -0.969 6.969 10 O -0.960 6.960 11 N -0.858 5.858 12 C 0.042 3.958 13 H 0.111 0.889 14 C -0.158 4.158 15 C -0.156 4.156 16 C -0.095 4.095 17 H 0.089 0.911 18 C -0.110 4.110 19 C -0.207 4.207 20 C -0.207 4.207 21 C -0.150 4.150 22 C -0.172 4.172 23 C -0.174 4.174 24 C -0.174 4.174 25 S 0.433 5.567 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.255 0.745 31 H -0.201 1.201 32 H -0.238 1.238 33 H 0.264 0.736 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.116 0.884 50 H 0.122 0.878 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.074 -0.983 -3.928 4.549 hybrid contribution 0.706 0.312 -0.347 0.846 sum -1.368 -0.672 -4.275 4.539 Atomic orbital electron populations 1.20498 0.85985 1.02791 1.04670 1.24704 1.01414 0.94789 1.08571 1.17702 0.89927 0.95638 1.03101 1.24763 0.93473 0.94036 1.05518 1.86377 1.46149 1.39119 1.63633 0.95052 0.79374 0.86098 0.74240 1.29392 1.11568 1.13787 1.24660 1.01223 0.72543 0.73317 0.73162 1.93567 1.47068 1.80313 1.75932 1.93467 1.76117 1.47722 1.78682 1.55372 1.20862 1.81131 1.28441 1.21053 0.88808 0.94745 0.91201 0.88872 1.21784 0.99454 0.97274 0.97289 1.21668 0.97805 0.97270 0.98845 1.21168 0.97031 0.95116 0.96173 0.91056 1.21127 0.97366 0.95586 0.96875 1.21898 1.00571 0.98091 1.00172 1.21899 1.00453 0.99406 0.98941 1.21577 0.98026 0.97995 0.97400 1.22001 0.98309 0.97426 0.99448 1.24736 1.01513 0.94840 0.96330 1.21002 0.87325 1.03545 1.05491 1.84305 0.94850 1.08349 1.69208 0.91089 0.90908 0.87958 0.87567 0.74508 1.20141 1.23818 0.73588 0.90732 0.89237 0.90723 0.91882 0.91560 0.92862 0.93175 0.92467 0.91950 0.93255 0.92801 0.91955 0.92070 0.89979 0.92298 0.88400 0.87793 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 8.86 71.23 0.63 0.48 16 2 C -0.18 -0.84 6.19 24.59 0.15 -0.69 16 3 C -0.05 -0.30 3.44 -20.92 -0.07 -0.37 16 4 C -0.07 -0.16 2.26 71.24 0.16 0.00 16 5 O -0.54 1.56 10.57 -148.98 -1.58 -0.01 16 6 Si 0.75 3.35 30.76 68.60 2.11 5.46 16 7 C -0.69 -3.82 4.80 21.22 0.10 -3.72 16 8 S 2.71 15.60 5.25 -56.49 -0.30 15.30 16 9 O -0.98 -9.80 15.21 -128.00 -1.95 -11.75 16 10 O -0.97 -9.16 13.24 -128.00 -1.69 -10.85 16 11 N -1.09 1.51 4.73 -169.38 -0.80 0.71 16 12 C 0.15 -0.49 3.10 44.99 0.14 -0.35 16 13 H 0.09 -0.30 5.79 -2.39 -0.01 -0.31 16 14 C -0.12 0.67 5.63 30.60 0.17 0.84 16 15 C -0.12 0.66 4.67 30.60 0.14 0.80 16 16 C -0.08 0.36 1.77 -10.79 -0.02 0.34 16 17 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 18 C -0.09 0.32 2.51 -10.80 -0.03 0.29 16 19 C -0.15 0.38 8.84 71.98 0.64 1.02 16 20 C -0.15 0.49 8.84 71.98 0.64 1.13 16 21 C -0.11 0.41 4.69 30.60 0.14 0.56 16 22 C -0.13 0.41 5.64 30.60 0.17 0.59 16 23 C -0.05 -0.19 6.49 24.59 0.16 -0.03 16 24 C -0.12 -0.02 9.11 71.24 0.65 0.63 16 25 S 0.17 0.43 23.31 -56.49 -1.32 -0.88 16 26 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 27 H 0.07 0.23 5.75 -2.38 -0.01 0.21 16 28 H 0.10 0.05 7.13 -2.39 -0.02 0.03 16 29 H 0.11 0.20 3.10 -2.39 -0.01 0.19 16 30 H 0.40 -4.96 8.74 -74.06 -0.65 -5.61 16 31 H -0.27 -2.09 5.96 99.48 0.59 -1.50 16 32 H -0.31 -4.37 7.11 99.48 0.71 -3.66 16 33 H 0.43 -1.87 6.83 -96.74 -0.66 -2.54 16 34 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.07 -0.43 6.43 -2.39 -0.02 -0.45 16 37 H 0.06 -0.37 6.50 -2.39 -0.02 -0.38 16 38 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 41 H 0.06 -0.14 6.43 -2.39 -0.02 -0.16 16 42 H 0.06 -0.25 6.43 -2.39 -0.02 -0.27 16 43 H 0.05 -0.11 8.14 -2.38 -0.02 -0.13 16 44 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.06 -0.17 6.43 -2.39 -0.02 -0.18 16 46 H 0.06 -0.22 7.46 -2.39 -0.02 -0.23 16 47 H 0.08 -0.33 8.14 -2.39 -0.02 -0.34 16 48 H 0.06 -0.01 6.21 -2.39 -0.01 -0.02 16 49 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 51 H 0.09 -0.02 6.34 -2.39 -0.02 -0.04 16 Total: 0.00 -16.22 390.27 -2.16 -18.39 By element: Atomic # 1 Polarization: -17.44 SS G_CDS: -0.42 Total: -17.86 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 3.78 Total: 1.50 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: -0.80 Total: 0.71 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -5.22 Total: -22.62 kcal Atomic # 14 Polarization: 3.35 SS G_CDS: 2.11 Total: 5.46 kcal Atomic # 16 Polarization: 16.04 SS G_CDS: -1.61 Total: 14.42 kcal Total: -16.22 -2.16 -18.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_15065288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.985 kcal (2) G-P(sol) polarization free energy of solvation -16.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds