Wall clock time and date at job start Mon Mar 8 2021 12:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 C 1.53000 * 109.46979 * 120.00012 * 2 1 3 5 5 H 1.08997 * 109.47005 * 299.99882 * 4 2 1 6 6 C 1.53000 * 109.47266 * 60.00400 * 4 2 1 7 7 C 1.52998 * 109.46904 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47190 * 299.99507 * 7 6 4 9 9 H 1.08995 * 109.47141 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47075 * 300.00335 * 8 7 6 11 11 S 1.65599 * 119.99964 * 262.38693 * 10 8 7 12 12 O 1.42100 * 106.39949 * 179.08039 * 11 10 8 13 13 O 1.42097 * 106.40057 * 311.99672 * 11 10 8 14 14 C 1.76200 * 107.22001 * 65.54000 * 11 10 8 15 15 C 1.38207 * 119.99978 * 66.24405 * 14 11 10 16 16 C 1.50704 * 120.00068 * 0.02562 * 15 14 11 17 17 O 1.42904 * 109.46732 * 96.77001 * 16 15 14 18 18 Si 1.86307 * 109.47048 * 216.76710 * 16 15 14 19 19 C 1.38256 * 120.00128 * 179.97438 * 15 14 11 20 20 C 1.38215 * 120.00174 * 0.02562 * 19 15 14 21 21 C 1.38260 * 119.99541 * 359.97155 * 20 19 15 22 22 C 1.38214 * 120.00238 * 359.75427 * 21 20 19 23 23 C 1.52999 * 109.47034 * 59.99925 * 8 7 6 24 24 C 1.53000 * 109.47207 * 300.00459 * 23 8 7 25 25 H 1.09003 * 109.46898 * 299.99847 * 1 2 3 26 26 H 1.08993 * 109.47437 * 60.00047 * 1 2 3 27 27 H 1.08995 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46898 * 240.00153 * 2 1 3 29 29 H 1.08999 * 109.47148 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46783 * 300.00156 * 3 2 1 31 31 H 1.08997 * 109.47254 * 59.99862 * 3 2 1 32 32 H 1.08999 * 109.46795 * 299.99431 * 6 4 2 33 33 H 1.08997 * 109.47531 * 59.99804 * 6 4 2 34 34 H 1.09005 * 109.46973 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47571 * 59.99550 * 7 6 4 36 36 H 0.96997 * 120.00298 * 82.38034 * 10 8 7 37 37 H 1.08992 * 109.46990 * 336.76754 * 16 15 14 38 38 H 0.96693 * 113.99837 * 305.60790 * 17 16 15 39 39 H 1.48495 * 109.99604 * 60.00003 * 18 16 15 40 40 H 1.48497 * 109.99580 * 181.31908 * 18 16 15 41 41 H 1.08003 * 120.00485 * 179.97438 * 19 15 14 42 42 H 1.07991 * 120.00627 * 179.97438 * 20 19 15 43 43 H 1.08002 * 120.00092 * 179.97438 * 21 20 19 44 44 H 1.08000 * 120.00447 * 180.27300 * 22 21 20 45 45 H 1.09001 * 109.46941 * 179.97438 * 23 8 7 46 46 H 1.09003 * 109.46845 * 60.00497 * 23 8 7 47 47 H 1.08997 * 109.46834 * 299.99730 * 24 23 8 48 48 H 1.09005 * 109.46987 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 2.0406 -2.8851 2.4982 8 6 3.5707 -2.8851 2.4975 9 1 3.9344 -3.3994 3.3870 10 7 4.0585 -3.5756 1.3010 11 16 4.5137 -5.1653 1.3901 12 8 4.9113 -5.5429 0.0792 13 8 5.3648 -5.2761 2.5226 14 6 3.0679 -6.1018 1.7607 15 6 2.0408 -6.1809 0.8394 16 6 2.1576 -5.4666 -0.4825 17 8 2.6168 -6.3817 -1.4794 18 14 0.4907 -4.7962 -0.9755 19 6 0.9066 -6.9162 1.1299 20 6 0.7996 -7.5718 2.3420 21 6 1.8272 -7.4927 3.2636 22 6 2.9634 -6.7623 2.9709 23 6 4.0806 -1.4426 2.4974 24 6 3.5700 -0.7212 1.2485 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.4401 -2.1638 1.2493 33 1 1.8934 -2.6776 0.3593 34 1 1.6770 -3.9127 2.4984 35 1 1.6777 -2.3714 3.3884 36 1 4.1148 -3.1016 0.4566 37 1 2.8669 -4.6443 -0.3896 38 1 3.4390 -6.8350 -1.2483 39 1 0.0021 -3.8433 0.0533 40 1 0.5858 -4.1170 -2.2926 41 1 0.1037 -6.9777 0.4101 42 1 -0.0865 -8.1458 2.5691 43 1 1.7435 -8.0046 4.2109 44 1 3.7680 -6.7041 3.6890 45 1 5.1707 -1.4427 2.4974 46 1 3.7177 -0.9289 3.3877 47 1 3.9330 -1.2350 0.3584 48 1 3.9330 0.3066 1.2487 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623132_2726874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:31 Heat of formation + Delta-G solvation = -95.369387 kcal Electronic energy + Delta-G solvation = -30678.788691 eV Core-core repulsion = 26826.317931 eV Total energy + Delta-G solvation = -3852.470760 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.154 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.95289 -40.60806 -38.54284 -37.40339 -37.05784 -36.93357 -33.44483 -32.88028 -32.47530 -32.05183 -29.68203 -28.15817 -26.99350 -24.50394 -24.17590 -23.53106 -22.87102 -21.36803 -21.00752 -20.27242 -19.23940 -18.88496 -18.04198 -17.51818 -17.02891 -16.68330 -16.55204 -15.98083 -15.89059 -15.49912 -15.40197 -15.30953 -15.02478 -14.96952 -14.59123 -14.40672 -14.31765 -13.90207 -13.67029 -13.58793 -13.49232 -13.23457 -13.17370 -13.08404 -12.89789 -12.81370 -12.69308 -12.50484 -12.30237 -12.18009 -12.01370 -11.93636 -11.84520 -11.51860 -11.48526 -11.35338 -11.03677 -10.99891 -10.59695 -10.45481 -10.09281 -4.98856 -0.75819 -0.36819 0.05917 1.23286 1.55593 1.81138 1.91770 2.31103 2.63131 3.18759 3.32343 3.46325 3.50409 3.57034 3.68014 3.71257 3.85733 3.89121 3.92342 3.95202 4.02677 4.09716 4.15912 4.19220 4.25408 4.32598 4.38255 4.44198 4.48627 4.51396 4.61498 4.62238 4.68788 4.70025 4.84030 4.87609 4.88946 4.94184 4.96162 5.00081 5.05290 5.07025 5.07322 5.14888 5.18807 5.21337 5.29262 5.40093 5.46115 5.63325 5.79085 6.58355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.084 4.084 5 H 0.075 0.925 6 C -0.117 4.117 7 C -0.141 4.141 8 C 0.150 3.850 9 H 0.095 0.905 10 N -1.111 6.111 11 S 2.690 3.310 12 O -0.957 6.957 13 O -0.954 6.954 14 C -0.668 4.668 15 C -0.017 4.017 16 C -0.098 4.098 17 O -0.524 6.524 18 Si 0.729 3.271 19 C -0.123 4.123 20 C -0.057 4.057 21 C -0.134 4.134 22 C -0.020 4.020 23 C -0.122 4.122 24 C -0.119 4.119 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.418 0.582 37 H 0.062 0.938 38 H 0.377 0.623 39 H -0.228 1.228 40 H -0.248 1.248 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 1.081 2.862 6.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.102 4.102 5 H 0.094 0.906 6 C -0.155 4.155 7 C -0.180 4.180 8 C 0.043 3.957 9 H 0.113 0.887 10 N -0.873 5.873 11 S 2.780 3.220 12 O -0.947 6.947 13 O -0.943 6.943 14 C -0.755 4.755 15 C -0.019 4.019 16 C -0.206 4.206 17 O -0.331 6.331 18 Si 0.625 3.375 19 C -0.142 4.142 20 C -0.075 4.075 21 C -0.153 4.153 22 C -0.039 4.039 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.255 0.745 37 H 0.080 0.920 38 H 0.227 0.773 39 H -0.151 1.151 40 H -0.172 1.172 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.163 0.837 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.302 1.578 2.417 6.037 hybrid contribution 0.967 0.058 0.338 1.026 sum -4.335 1.637 2.755 5.391 Atomic orbital electron populations 1.21914 0.95228 1.01759 1.01953 1.21166 0.95830 0.96371 0.97932 1.21896 1.01198 0.95729 1.01865 1.21261 0.95115 0.95401 0.98423 0.90644 1.21804 1.00876 0.95187 0.97588 1.22096 0.95007 1.01490 0.99391 1.20895 0.93752 0.94643 0.86393 0.88656 1.55719 1.83575 1.29124 1.18839 1.02045 0.73636 0.72609 0.73758 1.93595 1.80987 1.81797 1.38300 1.93593 1.62287 1.85712 1.52756 1.30774 1.21272 1.19669 1.03827 1.19988 0.92923 0.94863 0.94081 1.25816 1.12163 0.94690 0.87979 1.86686 1.46011 1.58719 1.41707 0.93265 0.79642 0.83420 0.81204 1.21160 0.97522 0.97882 0.97615 1.21555 0.98341 0.94985 0.92614 1.21399 0.93740 0.99752 1.00376 1.21024 0.97708 0.91577 0.93610 1.21785 1.01416 0.93618 0.99294 1.21671 0.95231 1.00982 0.97796 0.92533 0.92653 0.92621 0.91458 0.92326 0.92739 0.92619 0.91014 0.92470 0.91391 0.90149 0.74533 0.92037 0.77282 1.15130 1.17182 0.84027 0.84493 0.84591 0.83746 0.90733 0.90170 0.92099 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.14 8.84 37.16 0.33 0.47 16 2 C -0.09 0.11 2.50 -90.62 -0.23 -0.12 16 3 C -0.15 0.18 8.84 37.16 0.33 0.51 16 4 C -0.08 0.15 1.78 -90.62 -0.16 -0.01 16 5 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 6 C -0.12 0.17 3.64 -26.73 -0.10 0.07 16 7 C -0.14 0.27 5.64 -26.73 -0.15 0.12 16 8 C 0.15 -0.23 3.13 -67.93 -0.21 -0.44 16 9 H 0.10 -0.15 7.47 -51.93 -0.39 -0.54 16 10 N -1.11 0.61 3.82 -4.89 -0.02 0.59 16 11 S 2.69 5.16 4.91 -107.50 -0.53 4.63 16 12 O -0.96 -3.94 14.93 -60.31 -0.90 -4.84 16 13 O -0.95 -4.21 16.29 -57.17 -0.93 -5.14 16 14 C -0.67 -0.53 5.04 -39.58 -0.20 -0.73 16 15 C -0.02 -0.01 4.66 -104.62 -0.49 -0.49 16 16 C -0.10 -0.10 1.89 36.01 0.07 -0.03 16 17 O -0.52 -1.42 12.64 -37.70 -0.48 -1.89 16 18 Si 0.73 -0.34 28.95 -169.99 -4.92 -5.26 16 19 C -0.12 0.15 8.66 -39.58 -0.34 -0.20 16 20 C -0.06 0.11 10.05 -39.58 -0.40 -0.28 16 21 C -0.13 0.20 10.05 -39.58 -0.40 -0.20 16 22 C -0.02 0.00 9.55 -39.58 -0.38 -0.38 16 23 C -0.12 0.26 5.64 -26.73 -0.15 0.11 16 24 C -0.12 0.24 4.66 -26.73 -0.12 0.12 16 25 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 27 H 0.05 -0.04 6.43 -51.93 -0.33 -0.37 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.06 -0.08 6.43 -51.93 -0.33 -0.42 16 30 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.07 -0.07 5.73 -51.93 -0.30 -0.37 16 33 H 0.06 -0.06 5.15 -51.93 -0.27 -0.33 16 34 H 0.07 -0.11 7.03 -51.93 -0.37 -0.47 16 35 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 36 H 0.42 -0.65 6.34 -34.47 -0.22 -0.87 16 37 H 0.06 0.04 4.26 -51.93 -0.22 -0.18 16 38 H 0.38 0.79 7.68 45.56 0.35 1.14 16 39 H -0.23 0.19 5.39 56.52 0.30 0.50 16 40 H -0.25 -0.61 7.11 56.52 0.40 -0.20 16 41 H 0.14 -0.49 6.16 -52.48 -0.32 -0.81 16 42 H 0.14 -0.61 8.06 -52.49 -0.42 -1.04 16 43 H 0.14 -0.48 8.06 -52.49 -0.42 -0.90 16 44 H 0.14 -0.09 7.33 -52.49 -0.38 -0.48 16 45 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 46 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 47 H 0.06 -0.12 6.52 -51.93 -0.34 -0.46 16 48 H 0.07 -0.16 6.43 -51.93 -0.33 -0.49 16 LS Contribution 360.96 15.07 5.44 5.44 Total: 0.00 -6.67 360.96 -12.34 -19.01 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -7.40 Total: -11.04 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.60 Total: -1.49 kcal Atomic # 7 Polarization: 0.61 SS G_CDS: -0.02 Total: 0.59 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -2.31 Total: -11.88 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: -4.92 Total: -5.26 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -0.53 Total: 4.63 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -6.67 -12.34 -19.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_2726874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.362 kcal (2) G-P(sol) polarization free energy of solvation -6.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds