Wall clock time and date at job start Mon Mar 8 2021 12:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 C 1.53000 * 109.46979 * 120.00012 * 2 1 3 5 5 H 1.08997 * 109.47005 * 299.99882 * 4 2 1 6 6 C 1.53000 * 109.47266 * 60.00400 * 4 2 1 7 7 C 1.52998 * 109.46904 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47190 * 299.99507 * 7 6 4 9 9 H 1.08995 * 109.47141 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47075 * 300.00335 * 8 7 6 11 11 S 1.65599 * 119.99964 * 262.38693 * 10 8 7 12 12 O 1.42100 * 106.39949 * 179.08039 * 11 10 8 13 13 O 1.42097 * 106.40057 * 311.99672 * 11 10 8 14 14 C 1.76200 * 107.22001 * 65.54000 * 11 10 8 15 15 C 1.38207 * 119.99978 * 66.24405 * 14 11 10 16 16 C 1.50704 * 120.00068 * 0.02562 * 15 14 11 17 17 O 1.42904 * 109.46732 * 96.77001 * 16 15 14 18 18 Si 1.86307 * 109.47048 * 216.76710 * 16 15 14 19 19 C 1.38256 * 120.00128 * 179.97438 * 15 14 11 20 20 C 1.38215 * 120.00174 * 0.02562 * 19 15 14 21 21 C 1.38260 * 119.99541 * 359.97155 * 20 19 15 22 22 C 1.38214 * 120.00238 * 359.75427 * 21 20 19 23 23 C 1.52999 * 109.47034 * 59.99925 * 8 7 6 24 24 C 1.53000 * 109.47207 * 300.00459 * 23 8 7 25 25 H 1.09003 * 109.46898 * 299.99847 * 1 2 3 26 26 H 1.08993 * 109.47437 * 60.00047 * 1 2 3 27 27 H 1.08995 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46898 * 240.00153 * 2 1 3 29 29 H 1.08999 * 109.47148 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46783 * 300.00156 * 3 2 1 31 31 H 1.08997 * 109.47254 * 59.99862 * 3 2 1 32 32 H 1.08999 * 109.46795 * 299.99431 * 6 4 2 33 33 H 1.08997 * 109.47531 * 59.99804 * 6 4 2 34 34 H 1.09005 * 109.46973 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47571 * 59.99550 * 7 6 4 36 36 H 0.96997 * 120.00298 * 82.38034 * 10 8 7 37 37 H 1.08992 * 109.46990 * 336.76754 * 16 15 14 38 38 H 0.96693 * 113.99837 * 305.60790 * 17 16 15 39 39 H 1.48495 * 109.99604 * 60.00003 * 18 16 15 40 40 H 1.48497 * 109.99580 * 181.31908 * 18 16 15 41 41 H 1.08003 * 120.00485 * 179.97438 * 19 15 14 42 42 H 1.07991 * 120.00627 * 179.97438 * 20 19 15 43 43 H 1.08002 * 120.00092 * 179.97438 * 21 20 19 44 44 H 1.08000 * 120.00447 * 180.27300 * 22 21 20 45 45 H 1.09001 * 109.46941 * 179.97438 * 23 8 7 46 46 H 1.09003 * 109.46845 * 60.00497 * 23 8 7 47 47 H 1.08997 * 109.46834 * 299.99730 * 24 23 8 48 48 H 1.09005 * 109.46987 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 2.0406 -2.8851 2.4982 8 6 3.5707 -2.8851 2.4975 9 1 3.9344 -3.3994 3.3870 10 7 4.0585 -3.5756 1.3010 11 16 4.5137 -5.1653 1.3901 12 8 4.9113 -5.5429 0.0792 13 8 5.3648 -5.2761 2.5226 14 6 3.0679 -6.1018 1.7607 15 6 2.0408 -6.1809 0.8394 16 6 2.1576 -5.4666 -0.4825 17 8 2.6168 -6.3817 -1.4794 18 14 0.4907 -4.7962 -0.9755 19 6 0.9066 -6.9162 1.1299 20 6 0.7996 -7.5718 2.3420 21 6 1.8272 -7.4927 3.2636 22 6 2.9634 -6.7623 2.9709 23 6 4.0806 -1.4426 2.4974 24 6 3.5700 -0.7212 1.2485 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.4401 -2.1638 1.2493 33 1 1.8934 -2.6776 0.3593 34 1 1.6770 -3.9127 2.4984 35 1 1.6777 -2.3714 3.3884 36 1 4.1148 -3.1016 0.4566 37 1 2.8669 -4.6443 -0.3896 38 1 3.4390 -6.8350 -1.2483 39 1 0.0021 -3.8433 0.0533 40 1 0.5858 -4.1170 -2.2926 41 1 0.1037 -6.9777 0.4101 42 1 -0.0865 -8.1458 2.5691 43 1 1.7435 -8.0046 4.2109 44 1 3.7680 -6.7041 3.6890 45 1 5.1707 -1.4427 2.4974 46 1 3.7177 -0.9289 3.3877 47 1 3.9330 -1.2350 0.3584 48 1 3.9330 0.3066 1.2487 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623132_2726874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:30 Heat of formation + Delta-G solvation = -92.144743 kcal Electronic energy + Delta-G solvation = -30678.648860 eV Core-core repulsion = 26826.317931 eV Total energy + Delta-G solvation = -3852.330929 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.154 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.86727 -40.51925 -38.73516 -37.49486 -37.16858 -37.01674 -33.39767 -32.83012 -32.38517 -31.92133 -29.58949 -28.07134 -26.98686 -24.42879 -24.07705 -23.39531 -22.82680 -21.35081 -20.93420 -20.24822 -19.25441 -18.99006 -18.10071 -17.54022 -16.97413 -16.66119 -16.49763 -15.99080 -15.90648 -15.43524 -15.35615 -15.25833 -14.96891 -14.89382 -14.49700 -14.39336 -14.27563 -13.87572 -13.66715 -13.57785 -13.42376 -13.40602 -13.31371 -13.14013 -12.82732 -12.72707 -12.66370 -12.41150 -12.25514 -12.08313 -11.98546 -11.93081 -11.75377 -11.54475 -11.43439 -11.30399 -11.01234 -10.90093 -10.50800 -10.38036 -10.01640 -4.97802 -0.84771 -0.32765 0.15293 1.21197 1.57011 1.77565 1.90821 2.35593 2.56724 3.11345 3.31924 3.57104 3.62178 3.68803 3.73645 3.76331 3.86078 3.96028 4.03374 4.10967 4.13972 4.21323 4.27286 4.32210 4.37728 4.40039 4.52675 4.56518 4.59178 4.62674 4.70316 4.73783 4.77174 4.81813 4.96382 4.96984 5.00485 5.05662 5.06462 5.15030 5.16065 5.19540 5.21618 5.26595 5.31893 5.32424 5.40039 5.50656 5.57125 5.77493 5.84819 6.43338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.078 4.078 5 H 0.081 0.919 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.146 3.854 9 H 0.095 0.905 10 N -1.105 6.105 11 S 2.695 3.305 12 O -0.987 6.987 13 O -0.985 6.985 14 C -0.672 4.672 15 C -0.027 4.027 16 C -0.117 4.117 17 O -0.538 6.538 18 Si 0.787 3.213 19 C -0.128 4.128 20 C -0.051 4.051 21 C -0.134 4.134 22 C -0.034 4.034 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.421 0.579 37 H 0.059 0.941 38 H 0.376 0.624 39 H -0.217 1.217 40 H -0.294 1.294 41 H 0.165 0.835 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.144 0.856 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 0.846 4.129 8.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.096 4.096 5 H 0.099 0.901 6 C -0.156 4.156 7 C -0.176 4.176 8 C 0.040 3.960 9 H 0.113 0.887 10 N -0.868 5.868 11 S 2.788 3.212 12 O -0.977 6.977 13 O -0.975 6.975 14 C -0.762 4.762 15 C -0.029 4.029 16 C -0.224 4.224 17 O -0.345 6.345 18 Si 0.684 3.316 19 C -0.146 4.146 20 C -0.069 4.069 21 C -0.152 4.152 22 C -0.054 4.054 23 C -0.159 4.159 24 C -0.157 4.157 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.259 0.741 37 H 0.076 0.924 38 H 0.226 0.774 39 H -0.141 1.141 40 H -0.221 1.221 41 H 0.182 0.818 42 H 0.186 0.814 43 H 0.176 0.824 44 H 0.161 0.839 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.940 1.349 3.700 7.979 hybrid contribution 1.477 0.136 -0.076 1.485 sum -5.463 1.486 3.623 6.721 Atomic orbital electron populations 1.21911 0.95273 1.01670 1.01964 1.21167 0.95801 0.96478 0.97947 1.21879 1.01326 0.95561 1.01760 1.21207 0.95104 0.95126 0.98198 0.90101 1.21819 1.00827 0.95390 0.97601 1.22080 0.94365 1.01555 0.99621 1.21037 0.94272 0.94846 0.85834 0.88675 1.55537 1.83520 1.28265 1.19485 1.01505 0.73969 0.73102 0.72585 1.93549 1.82077 1.82553 1.39518 1.93546 1.64070 1.86376 1.53521 1.30449 1.20682 1.20394 1.04681 1.19950 0.93653 0.95774 0.93505 1.26164 1.13146 0.94566 0.88486 1.86654 1.46005 1.59104 1.42774 0.92732 0.78274 0.82276 0.78317 1.21503 0.97391 0.97176 0.98562 1.21950 0.99033 0.94191 0.91731 1.21722 0.93072 0.99001 1.01438 1.21173 0.98617 0.92208 0.93384 1.21786 1.01159 0.93186 0.99760 1.21669 0.95147 1.01125 0.97714 0.92126 0.93033 0.92745 0.92369 0.92121 0.93202 0.92336 0.91039 0.93151 0.91472 0.88880 0.74058 0.92399 0.77440 1.14063 1.22097 0.81820 0.81403 0.82378 0.83851 0.91195 0.88894 0.92525 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.27 8.84 71.98 0.64 0.91 16 2 C -0.10 0.19 2.50 -10.79 -0.03 0.16 16 3 C -0.15 0.35 8.84 71.98 0.64 0.98 16 4 C -0.08 0.30 1.78 -10.79 -0.02 0.28 16 5 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 6 C -0.12 0.36 3.64 30.59 0.11 0.48 16 7 C -0.14 0.59 5.64 30.60 0.17 0.76 16 8 C 0.15 -0.39 3.13 44.99 0.14 -0.25 16 9 H 0.10 -0.24 7.47 -2.39 -0.02 -0.26 16 10 N -1.10 -0.22 3.82 -169.39 -0.65 -0.87 16 11 S 2.70 15.16 4.91 -56.49 -0.28 14.88 16 12 O -0.99 -10.52 14.93 -125.00 -1.87 -12.39 16 13 O -0.99 -10.62 16.29 -128.00 -2.09 -12.71 16 14 C -0.67 -1.53 5.04 22.27 0.11 -1.42 16 15 C -0.03 -0.02 4.66 -19.87 -0.09 -0.11 16 16 C -0.12 -0.35 1.89 71.24 0.13 -0.22 16 17 O -0.54 -3.72 12.64 -146.62 -1.85 -5.57 16 18 Si 0.79 -0.55 28.95 68.60 1.99 1.44 16 19 C -0.13 0.49 8.66 22.27 0.19 0.68 16 20 C -0.05 0.32 10.05 22.27 0.22 0.55 16 21 C -0.13 0.60 10.05 22.27 0.22 0.82 16 22 C -0.03 0.00 9.55 22.27 0.21 0.21 16 23 C -0.12 0.51 5.64 30.59 0.17 0.68 16 24 C -0.12 0.47 4.66 30.59 0.14 0.61 16 25 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.05 -0.08 6.43 -2.39 -0.02 -0.10 16 28 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.06 -0.17 6.43 -2.39 -0.02 -0.18 16 30 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.07 -0.20 5.73 -2.39 -0.01 -0.21 16 33 H 0.05 -0.08 5.15 -2.39 -0.01 -0.09 16 34 H 0.07 -0.25 7.03 -2.38 -0.02 -0.27 16 35 H 0.09 -0.62 8.14 -2.39 -0.02 -0.63 16 36 H 0.42 -0.61 6.34 -96.75 -0.61 -1.22 16 37 H 0.06 0.18 4.26 -2.39 -0.01 0.17 16 38 H 0.38 2.40 7.68 -74.06 -0.57 1.84 16 39 H -0.22 0.55 5.39 99.48 0.54 1.09 16 40 H -0.29 -2.01 7.11 99.48 0.71 -1.30 16 41 H 0.16 -1.45 6.16 -2.91 -0.02 -1.47 16 42 H 0.17 -2.12 8.06 -2.92 -0.02 -2.14 16 43 H 0.16 -1.47 8.06 -2.91 -0.02 -1.49 16 44 H 0.14 -0.06 7.33 -2.91 -0.02 -0.08 16 45 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 47 H 0.06 -0.17 6.52 -2.39 -0.02 -0.19 16 48 H 0.08 -0.33 6.43 -2.38 -0.02 -0.35 16 Total: 0.00 -16.66 360.96 -2.10 -18.77 By element: Atomic # 1 Polarization: -8.34 SS G_CDS: -0.33 Total: -8.68 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 2.97 Total: 5.12 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -0.65 Total: -0.87 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -5.80 Total: -30.67 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 1.99 Total: 1.44 kcal Atomic # 16 Polarization: 15.16 SS G_CDS: -0.28 Total: 14.88 kcal Total: -16.66 -2.10 -18.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623132_2726874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.379 kcal (2) G-P(sol) polarization free energy of solvation -16.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds