Wall clock time and date at job start Mon Mar 8 2021 12:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47551 * 2 1 4 4 C 1.50706 * 109.46789 * 239.99603 * 2 1 3 5 5 C 1.38228 * 120.00186 * 300.00165 * 4 2 1 6 6 C 1.38238 * 120.00179 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99528 * 359.95329 * 6 5 4 8 8 S 1.76203 * 119.99914 * 180.02562 * 7 6 5 9 9 O 1.42102 * 106.40008 * 336.46635 * 8 7 6 10 10 O 1.42099 * 106.40540 * 203.54099 * 8 7 6 11 11 N 1.65608 * 107.21790 * 90.00077 * 8 7 6 12 12 C 1.46494 * 119.99583 * 65.00194 * 11 8 7 13 13 H 1.09001 * 109.47746 * 334.99625 * 12 11 8 14 14 C 1.53001 * 109.47275 * 95.00419 * 12 11 8 15 15 C 1.52996 * 109.47349 * 59.99305 * 14 12 11 16 16 C 1.53000 * 109.46718 * 60.00454 * 15 14 12 17 17 H 1.08996 * 109.47565 * 59.99860 * 16 15 14 18 18 N 1.46504 * 109.46980 * 180.02562 * 16 15 14 19 19 O 1.21804 * 119.99593 * 240.00091 * 18 16 15 20 20 O 1.21799 * 120.00161 * 59.99741 * 18 16 15 21 21 C 1.52999 * 109.47203 * 299.99844 * 16 15 14 22 22 C 1.52996 * 109.47156 * 60.00424 * 21 16 15 23 23 C 1.38234 * 120.00238 * 0.27673 * 7 6 5 24 24 C 1.38232 * 120.00020 * 359.53885 * 23 7 6 25 25 H 0.96695 * 113.99884 * 59.99846 * 1 2 3 26 26 H 1.09006 * 109.47401 * 120.00310 * 2 1 3 27 27 H 1.48505 * 109.99526 * 298.68089 * 3 2 1 28 28 H 1.48498 * 110.00001 * 59.99677 * 3 2 1 29 29 H 1.08004 * 120.00203 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.00245 * 179.97438 * 6 5 4 31 31 H 0.96995 * 120.00068 * 244.72731 * 11 8 7 32 32 H 1.09005 * 109.47015 * 179.97438 * 14 12 11 33 33 H 1.09000 * 109.46714 * 299.99336 * 14 12 11 34 34 H 1.08996 * 109.46999 * 300.00608 * 15 14 12 35 35 H 1.09000 * 109.46976 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.47368 * 300.00102 * 21 16 15 37 37 H 1.09000 * 109.47077 * 180.02562 * 21 16 15 38 38 H 1.09000 * 109.46976 * 180.02562 * 22 21 16 39 39 H 1.08991 * 109.47627 * 60.00026 * 22 21 16 40 40 H 1.08001 * 120.00262 * 179.72084 * 23 7 6 41 41 H 1.07996 * 120.00148 * 180.20045 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5973 -2.0339 -1.4492 6 6 2.0584 -2.6858 -2.5776 7 6 2.8528 -2.0139 -3.4878 8 16 3.4401 -2.8445 -4.9264 9 8 3.4296 -4.2323 -4.6209 10 8 4.6073 -2.1492 -5.3430 11 7 2.3117 -2.6194 -6.1175 12 6 2.0541 -1.2743 -6.6375 13 1 2.3214 -0.5353 -5.8822 14 6 2.8937 -1.0445 -7.8957 15 6 2.5184 -2.0818 -8.9559 16 6 1.0342 -1.9441 -9.3011 17 1 0.8425 -0.9433 -9.6880 18 7 0.6747 -2.9378 -10.3158 19 8 0.2370 -2.5766 -11.3936 20 8 0.8135 -4.1250 -10.0817 21 6 0.1945 -2.1739 -8.0429 22 6 0.5698 -1.1366 -6.9828 23 6 3.1907 -0.6918 -3.2666 24 6 2.7265 -0.0389 -2.1402 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 0.8900 27 1 1.5880 2.4584 -1.2243 28 1 1.5616 2.4679 1.2084 29 1 0.9767 -2.5589 -0.7380 30 1 1.7979 -3.7199 -2.7483 31 1 1.8242 -3.3787 -6.4734 32 1 2.7016 -0.0438 -8.2829 33 1 3.9511 -1.1425 -7.6497 34 1 2.7101 -3.0825 -8.5688 35 1 3.1170 -1.9183 -9.8520 36 1 0.3862 -3.1748 -7.6559 37 1 -0.8628 -2.0763 -8.2890 38 1 -0.0281 -1.3007 -6.0863 39 1 0.3781 -0.1359 -7.3697 40 1 3.8151 -0.1682 -3.9755 41 1 2.9878 0.9949 -1.9691 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623258_13421422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:34 Heat of formation + Delta-G solvation = -82.815372 kcal Electronic energy + Delta-G solvation = -28762.360542 eV Core-core repulsion = 24546.030586 eV Total energy + Delta-G solvation = -4216.329956 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.101 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.34934 -40.90051 -40.47364 -38.36613 -38.01344 -37.39064 -36.99214 -35.38201 -33.21861 -32.55851 -32.39717 -31.49704 -27.44806 -27.23562 -24.48941 -24.30060 -23.51379 -23.17883 -21.73435 -20.66701 -19.79398 -19.44390 -19.30407 -18.94090 -18.41881 -18.26057 -17.52992 -17.02312 -16.70675 -16.54468 -16.36766 -15.96072 -15.86939 -15.63769 -15.02317 -14.86181 -14.66881 -14.45215 -14.40564 -14.10350 -13.91281 -13.89138 -13.24180 -13.17559 -13.10561 -12.91669 -12.83147 -12.68433 -12.64857 -12.46407 -12.38430 -12.22857 -11.98302 -11.98030 -11.89411 -11.72900 -11.00651 -10.88644 -10.57114 -10.33014 -5.17026 -0.88393 -0.52923 -0.44148 -0.00506 0.64392 1.01295 1.36684 1.67863 1.75777 2.15237 2.56309 2.73366 2.80889 3.05252 3.07287 3.13654 3.24047 3.26915 3.42284 3.53043 3.54751 3.60106 3.63801 3.76689 3.81832 3.96957 4.07399 4.13730 4.16392 4.21905 4.35624 4.39555 4.42246 4.51061 4.53449 4.61956 4.73802 4.74663 4.79588 4.81849 5.05764 5.34010 5.50075 5.59370 6.11464 6.60921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.085 4.085 3 Si 0.688 3.312 4 C -0.060 4.060 5 C -0.113 4.113 6 C -0.016 4.016 7 C -0.675 4.675 8 S 2.692 3.308 9 O -0.951 6.951 10 O -0.949 6.949 11 N -1.113 6.113 12 C 0.149 3.851 13 H 0.098 0.902 14 C -0.134 4.134 15 C -0.125 4.125 16 C 0.016 3.984 17 H 0.137 0.863 18 N -0.019 5.019 19 O -0.163 6.163 20 O -0.156 6.156 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.018 4.018 24 C -0.138 4.138 25 H 0.377 0.623 26 H 0.126 0.874 27 H -0.257 1.257 28 H -0.253 1.253 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.420 0.580 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 5.865 2.852 6.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.195 4.195 3 Si 0.588 3.412 4 C -0.061 4.061 5 C -0.132 4.132 6 C -0.035 4.035 7 C -0.762 4.762 8 S 2.782 3.218 9 O -0.941 6.941 10 O -0.938 6.938 11 N -0.874 5.874 12 C 0.042 3.958 13 H 0.116 0.884 14 C -0.174 4.174 15 C -0.163 4.163 16 C -0.081 4.081 17 H 0.155 0.845 18 N 0.504 4.496 19 O -0.382 6.382 20 O -0.377 6.377 21 C -0.165 4.165 22 C -0.159 4.159 23 C -0.038 4.038 24 C -0.156 4.156 25 H 0.225 0.775 26 H 0.144 0.856 27 H -0.182 1.182 28 H -0.177 1.177 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.257 0.743 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.163 0.837 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.434 6.631 3.943 7.727 hybrid contribution -1.900 -0.285 -0.457 1.975 sum -1.466 6.346 3.486 7.387 Atomic orbital electron populations 1.86642 1.17154 1.79966 1.49331 1.25220 0.84387 1.11550 0.98331 0.94847 0.91652 0.73925 0.80758 1.20712 0.94924 0.94872 0.95574 1.21211 1.00023 0.94033 0.97904 1.21016 0.91044 0.99520 0.91930 1.30988 1.15535 1.07352 1.22341 1.02062 0.73307 0.73531 0.72949 1.93638 1.86051 1.30223 1.84167 1.93616 1.44028 1.75310 1.80886 1.55794 1.61699 1.15285 1.54670 1.20864 0.95400 0.83042 0.96501 0.88403 1.22094 1.02503 0.98969 0.93827 1.21874 0.89837 1.03248 1.01336 1.24388 1.00280 0.93430 0.90035 0.84518 1.44909 0.98458 1.03265 1.02955 1.94594 1.45464 1.85597 1.12521 1.94562 1.56365 1.01612 1.85173 1.21886 0.99777 1.02558 0.92252 1.21817 0.95375 0.99605 0.99078 1.20917 0.94205 0.91900 0.96743 1.21173 0.99209 1.00320 0.94892 0.77537 0.85643 1.18194 1.17731 0.84419 0.83838 0.74282 0.89486 0.88027 0.88772 0.89600 0.88916 0.89477 0.89010 0.89232 0.83674 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.48 12.77 -35.23 -0.45 0.03 16 2 C -0.09 0.19 2.82 36.01 0.10 0.30 16 3 Si 0.69 -1.97 29.79 -169.99 -5.06 -7.03 16 4 C -0.06 0.12 5.39 -104.62 -0.56 -0.44 16 5 C -0.11 0.16 9.61 -39.59 -0.38 -0.22 16 6 C -0.02 0.02 9.52 -39.58 -0.38 -0.36 16 7 C -0.68 0.98 5.82 -39.58 -0.23 0.75 16 8 S 2.69 -1.96 5.65 -107.50 -0.61 -2.57 16 9 O -0.95 -2.62 17.28 -57.17 -0.99 -3.61 16 10 O -0.95 -1.46 16.54 -57.17 -0.95 -2.40 16 11 N -1.11 4.20 4.74 -4.89 -0.02 4.18 16 12 C 0.15 -0.77 2.98 -67.93 -0.20 -0.98 16 13 H 0.10 -0.64 7.25 -51.93 -0.38 -1.02 16 14 C -0.13 0.62 5.64 -26.73 -0.15 0.47 16 15 C -0.12 0.39 5.15 -26.73 -0.14 0.25 16 16 C 0.02 -0.04 2.88 -67.93 -0.20 -0.24 16 17 H 0.14 -0.59 8.09 -51.93 -0.42 -1.01 16 18 N -0.02 -0.03 3.82 -4.89 -0.02 -0.05 16 19 O -0.16 -0.61 19.21 -29.46 -0.57 -1.17 16 20 O -0.16 -0.51 18.50 -29.46 -0.55 -1.05 16 21 C -0.13 0.55 5.12 -26.73 -0.14 0.41 16 22 C -0.12 0.73 5.63 -26.73 -0.15 0.58 16 23 C -0.02 0.04 8.92 -39.59 -0.35 -0.31 16 24 C -0.14 0.36 8.67 -39.58 -0.34 0.02 16 25 H 0.38 -1.47 8.70 45.56 0.40 -1.08 16 26 H 0.13 -0.36 7.96 -51.93 -0.41 -0.77 16 27 H -0.26 0.35 7.11 56.52 0.40 0.75 16 28 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 29 H 0.14 -0.29 8.06 -52.48 -0.42 -0.71 16 30 H 0.14 -0.31 7.62 -52.49 -0.40 -0.71 16 31 H 0.42 -1.93 6.81 -34.48 -0.23 -2.16 16 32 H 0.09 -0.54 8.14 -51.93 -0.42 -0.96 16 33 H 0.10 -0.34 7.64 -51.93 -0.40 -0.74 16 34 H 0.09 -0.22 7.32 -51.93 -0.38 -0.60 16 35 H 0.09 -0.23 8.14 -51.93 -0.42 -0.66 16 36 H 0.09 -0.38 6.39 -51.93 -0.33 -0.71 16 37 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 38 H 0.09 -0.60 8.14 -51.93 -0.42 -1.02 16 39 H 0.09 -0.65 8.14 -51.93 -0.42 -1.07 16 40 H 0.15 -0.59 7.61 -52.49 -0.40 -0.99 16 41 H 0.14 -0.63 4.88 -52.49 -0.26 -0.89 16 LS Contribution 349.69 15.07 5.27 5.27 Total: 0.00 -11.08 349.69 -12.00 -23.09 By element: Atomic # 1 Polarization: -9.97 SS G_CDS: -4.95 Total: -14.92 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -3.12 Total: 0.23 kcal Atomic # 7 Polarization: 4.18 SS G_CDS: -0.04 Total: 4.13 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -3.49 Total: -8.20 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: -5.06 Total: -7.03 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -0.61 Total: -2.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -11.08 -12.00 -23.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_13421422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.727 kcal (2) G-P(sol) polarization free energy of solvation -11.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds