Wall clock time and date at job start Mon Mar 8 2021 12:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47551 * 2 1 4 4 C 1.50706 * 109.46789 * 239.99603 * 2 1 3 5 5 C 1.38228 * 120.00186 * 300.00165 * 4 2 1 6 6 C 1.38238 * 120.00179 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99528 * 359.95329 * 6 5 4 8 8 S 1.76203 * 119.99914 * 180.02562 * 7 6 5 9 9 O 1.42102 * 106.40008 * 336.46635 * 8 7 6 10 10 O 1.42099 * 106.40540 * 203.54099 * 8 7 6 11 11 N 1.65608 * 107.21790 * 90.00077 * 8 7 6 12 12 C 1.46494 * 119.99583 * 65.00194 * 11 8 7 13 13 H 1.09001 * 109.47746 * 334.99625 * 12 11 8 14 14 C 1.53001 * 109.47275 * 95.00419 * 12 11 8 15 15 C 1.52996 * 109.47349 * 59.99305 * 14 12 11 16 16 C 1.53000 * 109.46718 * 60.00454 * 15 14 12 17 17 H 1.08996 * 109.47565 * 59.99860 * 16 15 14 18 18 N 1.46504 * 109.46980 * 180.02562 * 16 15 14 19 19 O 1.21804 * 119.99593 * 240.00091 * 18 16 15 20 20 O 1.21799 * 120.00161 * 59.99741 * 18 16 15 21 21 C 1.52999 * 109.47203 * 299.99844 * 16 15 14 22 22 C 1.52996 * 109.47156 * 60.00424 * 21 16 15 23 23 C 1.38234 * 120.00238 * 0.27673 * 7 6 5 24 24 C 1.38232 * 120.00020 * 359.53885 * 23 7 6 25 25 H 0.96695 * 113.99884 * 59.99846 * 1 2 3 26 26 H 1.09006 * 109.47401 * 120.00310 * 2 1 3 27 27 H 1.48505 * 109.99526 * 298.68089 * 3 2 1 28 28 H 1.48498 * 110.00001 * 59.99677 * 3 2 1 29 29 H 1.08004 * 120.00203 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.00245 * 179.97438 * 6 5 4 31 31 H 0.96995 * 120.00068 * 244.72731 * 11 8 7 32 32 H 1.09005 * 109.47015 * 179.97438 * 14 12 11 33 33 H 1.09000 * 109.46714 * 299.99336 * 14 12 11 34 34 H 1.08996 * 109.46999 * 300.00608 * 15 14 12 35 35 H 1.09000 * 109.46976 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.47368 * 300.00102 * 21 16 15 37 37 H 1.09000 * 109.47077 * 180.02562 * 21 16 15 38 38 H 1.09000 * 109.46976 * 180.02562 * 22 21 16 39 39 H 1.08991 * 109.47627 * 60.00026 * 22 21 16 40 40 H 1.08001 * 120.00262 * 179.72084 * 23 7 6 41 41 H 1.07996 * 120.00148 * 180.20045 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5973 -2.0339 -1.4492 6 6 2.0584 -2.6858 -2.5776 7 6 2.8528 -2.0139 -3.4878 8 16 3.4401 -2.8445 -4.9264 9 8 3.4296 -4.2323 -4.6209 10 8 4.6073 -2.1492 -5.3430 11 7 2.3117 -2.6194 -6.1175 12 6 2.0541 -1.2743 -6.6375 13 1 2.3214 -0.5353 -5.8822 14 6 2.8937 -1.0445 -7.8957 15 6 2.5184 -2.0818 -8.9559 16 6 1.0342 -1.9441 -9.3011 17 1 0.8425 -0.9433 -9.6880 18 7 0.6747 -2.9378 -10.3158 19 8 0.2370 -2.5766 -11.3936 20 8 0.8135 -4.1250 -10.0817 21 6 0.1945 -2.1739 -8.0429 22 6 0.5698 -1.1366 -6.9828 23 6 3.1907 -0.6918 -3.2666 24 6 2.7265 -0.0389 -2.1402 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 0.8900 27 1 1.5880 2.4584 -1.2243 28 1 1.5616 2.4679 1.2084 29 1 0.9767 -2.5589 -0.7380 30 1 1.7979 -3.7199 -2.7483 31 1 1.8242 -3.3787 -6.4734 32 1 2.7016 -0.0438 -8.2829 33 1 3.9511 -1.1425 -7.6497 34 1 2.7101 -3.0825 -8.5688 35 1 3.1170 -1.9183 -9.8520 36 1 0.3862 -3.1748 -7.6559 37 1 -0.8628 -2.0763 -8.2890 38 1 -0.0281 -1.3007 -6.0863 39 1 0.3781 -0.1359 -7.3697 40 1 3.8151 -0.1682 -3.9755 41 1 2.9878 0.9949 -1.9691 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623258_13421422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:33 Heat of formation + Delta-G solvation = -85.884209 kcal Electronic energy + Delta-G solvation = -28762.493617 eV Core-core repulsion = 24546.030586 eV Total energy + Delta-G solvation = -4216.463031 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.101 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.39088 -40.71295 -40.19429 -38.40547 -37.86171 -37.54244 -37.03651 -35.16567 -33.05227 -32.20709 -32.19988 -31.26735 -27.28788 -27.14569 -24.14590 -24.09816 -23.37814 -23.01290 -21.48239 -20.50194 -19.82678 -19.35607 -19.13840 -18.82741 -18.30567 -18.27630 -17.35396 -16.82914 -16.52814 -16.33090 -16.14733 -15.76053 -15.62263 -15.44636 -14.81703 -14.55457 -14.52233 -14.22268 -14.13536 -13.93193 -13.78022 -13.57640 -13.30597 -13.22608 -12.96110 -12.68929 -12.64050 -12.62037 -12.53070 -12.45352 -12.20042 -12.15586 -12.01224 -11.82181 -11.72826 -11.53045 -10.80992 -10.61375 -10.39408 -10.14505 -4.94733 -0.77313 -0.66124 -0.39230 0.18475 0.70238 1.22385 1.55243 1.86335 1.93681 2.32115 2.67704 3.00217 3.06134 3.19988 3.30804 3.46901 3.47736 3.58415 3.74945 3.78219 3.82794 3.88814 3.98525 4.10123 4.19300 4.20005 4.32962 4.42705 4.44953 4.49573 4.61296 4.70426 4.74712 4.83795 4.91614 4.93727 4.96397 4.98577 5.13330 5.19168 5.23268 5.24774 5.69311 5.90426 6.36845 6.41209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.092 4.092 3 Si 0.765 3.235 4 C -0.061 4.061 5 C -0.123 4.123 6 C -0.027 4.027 7 C -0.675 4.675 8 S 2.707 3.293 9 O -0.992 6.992 10 O -0.974 6.974 11 N -1.105 6.105 12 C 0.141 3.859 13 H 0.119 0.881 14 C -0.132 4.132 15 C -0.125 4.125 16 C 0.018 3.982 17 H 0.158 0.842 18 N -0.013 5.013 19 O -0.194 6.194 20 O -0.181 6.181 21 C -0.126 4.126 22 C -0.111 4.111 23 C -0.021 4.021 24 C -0.137 4.137 25 H 0.389 0.611 26 H 0.129 0.871 27 H -0.269 1.269 28 H -0.306 1.306 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.424 0.576 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.165 0.835 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 7.735 3.204 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.201 4.201 3 Si 0.669 3.331 4 C -0.062 4.062 5 C -0.142 4.142 6 C -0.047 4.047 7 C -0.764 4.764 8 S 2.799 3.201 9 O -0.983 6.983 10 O -0.963 6.963 11 N -0.868 5.868 12 C 0.035 3.965 13 H 0.137 0.863 14 C -0.171 4.171 15 C -0.163 4.163 16 C -0.078 4.078 17 H 0.176 0.824 18 N 0.505 4.495 19 O -0.410 6.410 20 O -0.401 6.401 21 C -0.165 4.165 22 C -0.150 4.150 23 C -0.040 4.040 24 C -0.155 4.155 25 H 0.238 0.762 26 H 0.147 0.853 27 H -0.195 1.195 28 H -0.234 1.234 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.262 0.738 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.182 0.818 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.331 8.469 4.247 9.480 hybrid contribution -1.900 -0.815 -0.505 2.128 sum -1.568 7.653 3.742 8.662 Atomic orbital electron populations 1.86611 1.17939 1.80401 1.50304 1.25405 0.83894 1.12300 0.98490 0.93985 0.90385 0.71583 0.77108 1.20776 0.94971 0.94661 0.95749 1.21302 1.00365 0.94521 0.97963 1.21109 0.91489 0.99802 0.92265 1.30801 1.15895 1.07828 1.21862 1.01293 0.73253 0.72381 0.73183 1.93579 1.86829 1.32881 1.84979 1.93580 1.45822 1.75460 1.81468 1.55560 1.61075 1.16388 1.53803 1.21155 0.96136 0.82438 0.96763 0.86342 1.22126 1.01883 0.99625 0.93493 1.21909 0.89408 1.03352 1.01663 1.24719 1.00630 0.92981 0.89484 0.82413 1.45562 0.97239 1.03538 1.03147 1.94577 1.46705 1.85544 1.14182 1.94548 1.57074 1.03214 1.85309 1.21976 0.99496 1.03162 0.91836 1.21835 0.94441 0.99985 0.98714 1.21209 0.94030 0.91510 0.97248 1.21412 0.98541 1.01246 0.94349 0.76198 0.85346 1.19486 1.23393 0.84306 0.83778 0.73797 0.86994 0.89158 0.89971 0.90176 0.89495 0.89375 0.87979 0.86993 0.81752 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.22 12.77 -148.98 -1.90 -0.68 16 2 C -0.09 0.48 2.82 71.24 0.20 0.69 16 3 Si 0.77 -5.04 29.79 68.60 2.04 -3.00 16 4 C -0.06 0.30 5.39 -19.86 -0.11 0.19 16 5 C -0.12 0.37 9.61 22.27 0.21 0.58 16 6 C -0.03 0.06 9.52 22.27 0.21 0.28 16 7 C -0.68 2.25 5.82 22.27 0.13 2.38 16 8 S 2.71 -2.87 5.65 -56.49 -0.32 -3.19 16 9 O -0.99 -6.91 17.28 -128.00 -2.21 -9.12 16 10 O -0.97 -3.13 16.54 -128.00 -2.12 -5.25 16 11 N -1.11 8.55 4.74 -169.38 -0.80 7.74 16 12 C 0.14 -1.70 2.98 45.00 0.13 -1.57 16 13 H 0.12 -1.86 7.25 -2.39 -0.02 -1.88 16 14 C -0.13 1.38 5.64 30.59 0.17 1.55 16 15 C -0.12 0.78 5.15 30.59 0.16 0.94 16 16 C 0.02 -0.11 2.88 44.99 0.13 0.02 16 17 H 0.16 -1.61 8.09 -2.39 -0.02 -1.63 16 18 N -0.01 -0.05 3.82 -169.39 -0.65 -0.70 16 19 O -0.19 -1.66 19.21 18.88 0.36 -1.30 16 20 O -0.18 -1.47 18.50 18.89 0.35 -1.12 16 21 C -0.13 1.20 5.12 30.59 0.16 1.35 16 22 C -0.11 1.61 5.63 30.60 0.17 1.78 16 23 C -0.02 0.13 8.92 22.27 0.20 0.33 16 24 C -0.14 0.97 8.67 22.27 0.19 1.17 16 25 H 0.39 -3.30 8.70 -74.06 -0.64 -3.94 16 26 H 0.13 -0.78 7.96 -2.38 -0.02 -0.80 16 27 H -0.27 1.22 7.11 99.48 0.71 1.93 16 28 H -0.31 -0.72 7.11 99.48 0.71 -0.01 16 29 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 30 H 0.14 -0.47 7.62 -2.91 -0.02 -0.49 16 31 H 0.42 -3.70 6.81 -96.75 -0.66 -4.36 16 32 H 0.11 -1.70 8.14 -2.38 -0.02 -1.72 16 33 H 0.09 -0.66 7.64 -2.39 -0.02 -0.68 16 34 H 0.08 -0.31 7.32 -2.39 -0.02 -0.33 16 35 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.09 -0.71 6.39 -2.38 -0.02 -0.72 16 37 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.10 -1.59 8.14 -2.39 -0.02 -1.61 16 39 H 0.11 -2.03 8.14 -2.39 -0.02 -2.05 16 40 H 0.17 -1.71 7.61 -2.91 -0.02 -1.73 16 41 H 0.16 -1.87 4.88 -2.91 -0.01 -1.88 16 Total: 0.00 -27.18 349.69 -3.46 -30.63 By element: Atomic # 1 Polarization: -23.53 SS G_CDS: -0.17 Total: -23.71 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 1.96 Total: 9.69 kcal Atomic # 7 Polarization: 8.49 SS G_CDS: -1.45 Total: 7.04 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -5.52 Total: -17.47 kcal Atomic # 14 Polarization: -5.04 SS G_CDS: 2.04 Total: -3.00 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -0.32 Total: -3.19 kcal Total: -27.18 -3.46 -30.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_13421422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.250 kcal (2) G-P(sol) polarization free energy of solvation -27.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds