Wall clock time and date at job start Mon Mar 8 2021 12:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47198 * 2 1 4 4 C 1.50700 * 109.47395 * 239.99573 * 2 1 3 5 5 C 1.33386 * 122.54242 * 285.00272 * 4 2 1 6 6 S 1.76204 * 125.19951 * 0.02562 * 5 4 2 7 7 O 1.42098 * 106.40319 * 64.92989 * 6 5 4 8 8 O 1.42110 * 106.40141 * 292.01058 * 6 5 4 9 9 N 1.65596 * 107.21799 * 178.47660 * 6 5 4 10 10 C 1.46494 * 120.00485 * 65.72802 * 9 6 5 11 11 H 1.08999 * 109.47123 * 335.91973 * 10 9 6 12 12 C 1.53000 * 109.47088 * 95.91678 * 10 9 6 13 13 C 1.52998 * 109.47188 * 60.00239 * 12 10 9 14 14 C 1.52991 * 109.47244 * 59.99961 * 13 12 10 15 15 H 1.09005 * 109.47138 * 60.00057 * 14 13 12 16 16 N 1.46494 * 109.47327 * 179.97438 * 14 13 12 17 17 O 1.21804 * 119.99729 * 60.00466 * 16 14 13 18 18 O 1.21802 * 120.00466 * 240.00288 * 16 14 13 19 19 C 1.52997 * 109.47505 * 300.00385 * 14 13 12 20 20 C 1.52998 * 109.47184 * 59.99578 * 19 14 13 21 21 S 1.75878 * 109.59483 * 179.74934 * 5 4 2 22 22 C 1.75885 * 90.97133 * 0.22992 * 21 5 4 23 23 C 1.33385 * 109.59264 * 359.97438 * 22 21 5 24 24 H 0.96699 * 113.99758 * 60.00429 * 1 2 3 25 25 H 1.09007 * 109.46965 * 119.99733 * 2 1 3 26 26 H 1.48501 * 110.00141 * 298.67818 * 3 2 1 27 27 H 1.48502 * 110.00236 * 59.99706 * 3 2 1 28 28 H 0.97005 * 119.99391 * 245.73785 * 9 6 5 29 29 H 1.09002 * 109.47080 * 180.02562 * 12 10 9 30 30 H 1.08999 * 109.46727 * 300.00326 * 12 10 9 31 31 H 1.08998 * 109.46874 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.47006 * 299.99938 * 13 12 10 33 33 H 1.09003 * 109.47779 * 180.02562 * 19 14 13 34 34 H 1.09005 * 109.46655 * 299.99967 * 19 14 13 35 35 H 1.08999 * 109.47247 * 180.02562 * 20 19 14 36 36 H 1.08993 * 109.47309 * 60.00388 * 20 19 14 37 37 H 1.07997 * 125.20122 * 179.97438 * 22 21 5 38 38 H 1.08002 * 122.54298 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.8962 -2.0378 -1.3571 6 16 1.2751 -3.1576 -0.1466 7 8 -0.1155 -2.8901 -0.0286 8 8 2.1739 -3.0993 0.9526 9 7 1.4061 -4.6832 -0.7772 10 6 2.7285 -5.2567 -1.0387 11 1 3.4524 -4.4534 -1.1754 12 6 3.1504 -6.1271 0.1468 13 6 2.1343 -7.2547 0.3388 14 6 2.0774 -8.1110 -0.9278 15 1 3.0614 -8.5378 -1.1223 16 7 1.1050 -9.1911 -0.7438 17 8 -0.0618 -8.9275 -0.5142 18 8 1.4632 -10.3528 -0.8203 19 6 1.6556 -7.2408 -2.1133 20 6 2.6717 -6.1132 -2.3053 21 16 2.5572 -2.4989 -2.9204 22 6 2.8594 -0.8136 -3.3231 23 6 2.4670 -0.0352 -2.3136 24 1 -0.3933 0.4416 -0.7651 25 1 1.7923 -0.5138 0.8901 26 1 1.5880 2.4585 -1.2243 27 1 1.5615 2.4679 1.2085 28 1 0.6071 -5.1970 -0.9735 29 1 4.1345 -6.5535 -0.0475 30 1 3.1908 -5.5170 1.0492 31 1 2.4347 -7.8745 1.1836 32 1 1.1503 -6.8280 0.5334 33 1 1.6146 -7.8510 -3.0156 34 1 0.6716 -6.8141 -1.9188 35 1 2.3709 -5.4929 -3.1496 36 1 3.6556 -6.5398 -2.4998 37 1 3.2958 -0.4628 -4.2466 38 1 2.5579 1.0407 -2.3402 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623258_13652106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:37 Heat of formation + Delta-G solvation = -68.785417 kcal Electronic energy + Delta-G solvation = -27831.317210 eV Core-core repulsion = 23704.747885 eV Total energy + Delta-G solvation = -4126.569325 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.058 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.33159 -40.51060 -40.18861 -38.19746 -37.37152 -37.28048 -36.88732 -35.40779 -32.55495 -31.66714 -31.46305 -28.16463 -27.24550 -24.51584 -24.47577 -23.51750 -22.01046 -21.44103 -19.98690 -19.91020 -19.75855 -19.32331 -18.74270 -18.27068 -18.24200 -17.38304 -16.88646 -16.60989 -16.28889 -16.16581 -15.97843 -15.76218 -15.42315 -14.87267 -14.49534 -14.42800 -14.26165 -14.19547 -13.90536 -13.68528 -13.18395 -13.06893 -13.05823 -12.92067 -12.76720 -12.71927 -12.62507 -12.44465 -12.36541 -12.36273 -12.12191 -11.96125 -11.73026 -11.71901 -10.99712 -10.81991 -10.57822 -9.85068 -5.10874 -0.82699 -0.80719 -0.42356 0.04591 0.41308 0.66154 1.05284 1.07298 1.43192 1.74282 1.83161 2.50841 2.75135 2.82158 3.10292 3.16471 3.23714 3.30252 3.42618 3.47132 3.55262 3.64552 3.77200 3.79597 3.84812 3.93485 4.11389 4.14082 4.19500 4.36167 4.40724 4.48926 4.52443 4.54221 4.67731 4.75877 4.82194 4.87283 5.35877 5.58308 6.25798 6.62778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.507 6.507 2 C -0.106 4.106 3 Si 0.710 3.290 4 C 0.010 3.990 5 C -0.768 4.768 6 S 2.713 3.287 7 O -0.925 6.925 8 O -0.942 6.942 9 N -1.116 6.116 10 C 0.143 3.857 11 H 0.100 0.900 12 C -0.132 4.132 13 C -0.125 4.125 14 C 0.016 3.984 15 H 0.138 0.862 16 N -0.019 5.019 17 O -0.156 6.156 18 O -0.162 6.162 19 C -0.127 4.127 20 C -0.121 4.121 21 S 0.199 5.801 22 C -0.160 4.160 23 C -0.163 4.163 24 H 0.379 0.621 25 H 0.127 0.873 26 H -0.253 1.253 27 H -0.247 1.247 28 H 0.422 0.578 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.180 0.820 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.212 3.269 -5.707 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.313 6.313 2 C -0.217 4.217 3 Si 0.609 3.391 4 C -0.008 4.008 5 C -0.967 4.967 6 S 2.797 3.203 7 O -0.915 6.915 8 O -0.932 6.932 9 N -0.879 5.879 10 C 0.036 3.964 11 H 0.117 0.883 12 C -0.172 4.172 13 C -0.164 4.164 14 C -0.081 4.081 15 H 0.156 0.844 16 N 0.504 4.496 17 O -0.377 6.377 18 O -0.381 6.381 19 C -0.165 4.165 20 C -0.161 4.161 21 S 0.465 5.535 22 C -0.297 4.297 23 C -0.193 4.193 24 H 0.227 0.773 25 H 0.144 0.856 26 H -0.177 1.177 27 H -0.171 1.171 28 H 0.260 0.740 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.197 0.803 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.704 3.309 -5.218 9.876 hybrid contribution -1.419 0.815 -0.758 1.803 sum 6.286 4.124 -5.976 9.604 Atomic orbital electron populations 1.86800 1.15499 1.79959 1.49037 1.25350 0.85670 1.13502 0.97170 0.94643 0.91016 0.72481 0.80997 1.18997 0.93802 0.91324 0.96640 1.35738 1.26265 1.14464 1.20254 1.01737 0.74001 0.71606 0.72944 1.93686 1.29943 1.83202 1.84690 1.93629 1.66861 1.85880 1.46792 1.55875 1.14199 1.33665 1.84117 1.20983 0.83300 0.97045 0.95097 0.88262 1.22057 0.98562 0.96298 1.00243 1.21883 1.03449 0.97053 0.93981 1.24383 0.93807 0.88748 1.01187 0.84425 1.44903 1.03048 1.03660 0.97962 1.94566 1.03264 1.89842 1.50070 1.94592 1.84243 1.05749 1.53545 1.21885 1.01751 0.97062 0.95789 1.21863 1.00392 0.96074 0.97747 1.83953 1.56583 1.06473 1.06528 1.26136 1.03493 0.96600 1.03452 1.20356 1.03400 1.02191 0.93315 0.77317 0.85558 1.17744 1.17138 0.74031 0.89299 0.88076 0.89512 0.88778 0.89308 0.88913 0.88979 0.88829 0.80307 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.21 12.18 -38.20 -0.47 -1.68 16 2 C -0.11 -0.08 2.33 36.01 0.08 0.01 16 3 Si 0.71 -1.08 30.45 -169.99 -5.18 -6.26 16 4 C 0.01 0.00 5.13 -106.25 -0.55 -0.55 16 5 C -0.77 -0.01 6.38 29.04 0.19 0.18 16 6 S 2.71 3.56 4.96 -107.50 -0.53 3.03 16 7 O -0.93 -4.54 17.31 -60.49 -1.05 -5.59 16 8 O -0.94 -3.12 16.95 -57.17 -0.97 -4.09 16 9 N -1.12 2.68 4.56 -4.89 -0.02 2.66 16 10 C 0.14 -0.60 2.38 -67.93 -0.16 -0.77 16 11 H 0.10 -0.51 6.99 -51.93 -0.36 -0.87 16 12 C -0.13 0.51 5.64 -26.73 -0.15 0.36 16 13 C -0.13 0.34 5.15 -26.74 -0.14 0.20 16 14 C 0.02 -0.04 2.88 -67.94 -0.20 -0.24 16 15 H 0.14 -0.59 8.09 -51.93 -0.42 -1.01 16 16 N -0.02 -0.03 3.82 -4.90 -0.02 -0.05 16 17 O -0.16 -0.55 18.51 -29.46 -0.55 -1.10 16 18 O -0.16 -0.62 19.21 -29.46 -0.57 -1.18 16 19 C -0.13 0.52 5.12 -26.73 -0.14 0.39 16 20 C -0.12 0.71 5.63 -26.73 -0.15 0.56 16 21 S 0.20 -0.59 21.63 -107.50 -2.32 -2.91 16 22 C -0.16 0.50 11.23 29.04 0.33 0.83 16 23 C -0.16 0.33 8.74 -41.21 -0.36 -0.03 16 24 H 0.38 -0.45 8.70 45.56 0.40 -0.06 16 25 H 0.13 0.13 7.34 -51.93 -0.38 -0.25 16 26 H -0.25 0.20 6.81 56.52 0.38 0.59 16 27 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 28 H 0.42 -1.47 6.79 -34.46 -0.23 -1.71 16 29 H 0.09 -0.51 8.14 -51.93 -0.42 -0.93 16 30 H 0.10 -0.24 7.74 -51.93 -0.40 -0.65 16 31 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.09 -0.17 7.31 -51.93 -0.38 -0.55 16 33 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 34 H 0.09 -0.35 6.40 -51.93 -0.33 -0.68 16 35 H 0.09 -0.60 8.14 -51.93 -0.42 -1.02 16 36 H 0.09 -0.69 8.14 -51.93 -0.42 -1.11 16 37 H 0.18 -1.04 8.06 -52.49 -0.42 -1.46 16 38 H 0.16 -0.58 5.53 -52.49 -0.29 -0.87 16 LS Contribution 337.75 15.07 5.09 5.09 Total: 0.00 -11.17 337.75 -11.98 -23.15 By element: Atomic # 1 Polarization: -7.86 SS G_CDS: -4.16 Total: -12.01 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.24 Total: 0.94 kcal Atomic # 7 Polarization: 2.65 SS G_CDS: -0.04 Total: 2.61 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -3.59 Total: -13.63 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.18 Total: -6.26 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.86 Total: 0.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -11.17 -11.98 -23.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_13652106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.633 kcal (2) G-P(sol) polarization free energy of solvation -11.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds