Wall clock time and date at job start Mon Mar 8 2021 12:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47365 * 2 1 4 4 C 1.50698 * 109.46868 * 120.00020 * 2 1 3 5 5 C 1.33391 * 125.20750 * 39.18922 * 4 2 1 6 6 S 1.76203 * 122.53493 * 0.06280 * 5 4 2 7 7 O 1.42097 * 106.39808 * 278.89620 * 6 5 4 8 8 O 1.42099 * 106.40209 * 51.81672 * 6 5 4 9 9 N 1.65594 * 107.21663 * 165.35906 * 6 5 4 10 10 C 1.46502 * 120.00267 * 66.77809 * 9 6 5 11 11 H 1.09000 * 109.47024 * 336.21238 * 10 9 6 12 12 C 1.53001 * 109.47134 * 96.21291 * 10 9 6 13 13 C 1.52999 * 109.47295 * 59.99691 * 12 10 9 14 14 C 1.53000 * 109.46665 * 60.00233 * 13 12 10 15 15 H 1.09003 * 109.47079 * 60.00629 * 14 13 12 16 16 N 1.46510 * 109.46877 * 179.97438 * 14 13 12 17 17 O 1.21802 * 119.99677 * 239.99745 * 16 14 13 18 18 O 1.21798 * 119.99960 * 60.00390 * 16 14 13 19 19 C 1.53002 * 109.47435 * 299.99804 * 14 13 12 20 20 C 1.52997 * 109.47186 * 216.20980 * 10 9 6 21 21 C 1.38418 * 114.92445 * 180.02562 * 5 4 2 22 22 C 1.33392 * 114.92232 * 0.02562 * 21 5 4 23 23 S 1.75884 * 109.59149 * 359.97438 * 22 21 5 24 24 H 0.96696 * 113.99999 * 305.43447 * 1 2 3 25 25 H 1.09000 * 109.47509 * 239.99590 * 2 1 3 26 26 H 1.48502 * 110.00197 * 178.68005 * 3 2 1 27 27 H 1.48499 * 109.99839 * 299.99745 * 3 2 1 28 28 H 0.97004 * 119.99986 * 246.77598 * 9 6 5 29 29 H 1.08992 * 109.47634 * 180.02562 * 12 10 9 30 30 H 1.09004 * 109.46876 * 300.00244 * 12 10 9 31 31 H 1.08996 * 109.47636 * 300.00467 * 13 12 10 32 32 H 1.09004 * 109.47165 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.46976 * 300.00420 * 19 14 13 34 34 H 1.09001 * 109.46897 * 180.02562 * 19 14 13 35 35 H 1.08997 * 109.47063 * 60.00421 * 20 10 9 36 36 H 1.09007 * 109.47112 * 180.02562 * 20 10 9 37 37 H 1.07994 * 122.54089 * 180.02562 * 21 5 4 38 38 H 1.08001 * 125.20480 * 179.73201 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.3912 -1.8102 1.7579 6 16 -0.0220 -2.5995 1.0616 7 8 -1.1537 -1.8711 1.5176 8 8 0.2690 -2.8023 -0.3144 9 7 -0.1286 -4.1045 1.7439 10 6 -0.4295 -4.2422 3.1711 11 1 -0.1404 -3.3300 3.6930 12 6 -1.9293 -4.4817 3.3553 13 6 -2.3352 -5.7621 2.6227 14 6 -1.5553 -6.9469 3.1963 15 1 -1.7792 -7.0494 4.2582 16 7 -1.9443 -8.1731 2.4952 17 8 -2.4344 -9.0998 3.1154 18 8 -1.7775 -8.2658 1.2923 19 6 -0.0554 -6.7075 3.0121 20 6 0.3503 -5.4270 3.7447 21 6 2.0253 -2.2847 2.8930 22 6 3.0802 -1.5701 3.2879 23 16 3.3188 -0.2157 2.1915 24 1 -0.3933 0.5121 0.7197 25 1 1.7924 -0.5139 -0.8899 26 1 3.5347 1.7702 0.0321 27 1 1.5616 2.4678 -1.2085 28 1 0.0080 -4.8951 1.1986 29 1 -2.1533 -4.5837 4.4171 30 1 -2.4849 -3.6377 2.9466 31 1 -2.1113 -5.6598 1.5609 32 1 -3.4038 -5.9325 2.7536 33 1 0.1684 -6.6050 1.9503 34 1 0.5001 -7.5517 3.4204 35 1 1.4189 -5.2564 3.6135 36 1 0.1261 -5.5297 4.8065 37 1 1.6914 -3.1667 3.4192 38 1 3.6917 -1.7876 4.1512 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623258_14772022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:41 Heat of formation + Delta-G solvation = -70.663432 kcal Electronic energy + Delta-G solvation = -28042.318362 eV Core-core repulsion = 23915.667600 eV Total energy + Delta-G solvation = -4126.650762 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.058 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.32448 -40.51932 -39.77689 -38.05440 -37.79999 -37.36317 -36.68133 -35.34030 -32.54341 -31.96479 -31.44462 -27.70405 -27.23994 -24.73568 -24.38506 -23.47345 -21.88127 -21.60004 -20.31719 -19.76109 -19.44615 -19.29009 -18.55381 -18.23693 -18.13461 -17.31706 -17.25912 -16.65001 -16.41465 -15.96903 -15.83444 -15.55804 -15.43839 -14.86424 -14.43688 -14.39480 -14.33225 -14.18787 -14.03635 -13.86287 -13.07798 -12.99740 -12.91794 -12.88517 -12.81497 -12.66692 -12.59157 -12.43581 -12.34520 -12.24520 -12.06625 -11.95505 -11.69856 -11.67365 -11.12376 -10.88967 -10.29609 -9.93826 -5.31065 -0.73865 -0.62636 -0.41608 0.19499 0.50433 0.66990 0.89938 0.99054 1.36680 1.72367 1.86299 2.67618 2.76212 2.84163 3.04610 3.12235 3.19353 3.25782 3.44139 3.50253 3.56199 3.65504 3.78977 3.83851 3.89262 3.95432 4.13293 4.15294 4.19215 4.34563 4.41625 4.46257 4.54953 4.56358 4.65980 4.78722 4.85748 4.92482 5.36575 5.66772 6.22511 6.63510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.072 4.072 3 Si 0.675 3.325 4 C -0.098 4.098 5 C -0.665 4.665 6 S 2.720 3.280 7 O -0.941 6.941 8 O -0.943 6.943 9 N -1.118 6.118 10 C 0.142 3.858 11 H 0.102 0.898 12 C -0.132 4.132 13 C -0.126 4.126 14 C 0.016 3.984 15 H 0.137 0.863 16 N -0.019 5.019 17 O -0.163 6.163 18 O -0.156 6.156 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.094 4.094 22 C -0.208 4.208 23 S 0.163 5.837 24 H 0.391 0.609 25 H 0.146 0.854 26 H -0.231 1.231 27 H -0.224 1.224 28 H 0.420 0.580 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.152 0.848 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 4.168 7.173 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.183 4.183 3 Si 0.572 3.428 4 C -0.219 4.219 5 C -0.762 4.762 6 S 2.804 3.196 7 O -0.931 6.931 8 O -0.933 6.933 9 N -0.880 5.880 10 C 0.035 3.965 11 H 0.120 0.880 12 C -0.172 4.172 13 C -0.164 4.164 14 C -0.081 4.081 15 H 0.155 0.845 16 N 0.504 4.496 17 O -0.382 6.382 18 O -0.377 6.377 19 C -0.165 4.165 20 C -0.163 4.163 21 C -0.122 4.122 22 C -0.344 4.344 23 S 0.426 5.574 24 H 0.241 0.759 25 H 0.163 0.837 26 H -0.155 1.155 27 H -0.147 1.147 28 H 0.256 0.744 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.169 0.831 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.081 6.778 6.076 10.425 hybrid contribution -0.193 -2.465 0.239 2.484 sum 4.888 4.313 6.315 9.076 Atomic orbital electron populations 1.86574 1.15806 1.76004 1.55415 1.25116 0.86094 1.11590 0.95548 0.94759 0.82116 0.76279 0.89660 1.25028 0.99165 0.97451 1.00232 1.29906 1.26076 1.09950 1.10305 1.01542 0.73434 0.71816 0.72781 1.93577 1.46599 1.70764 1.82115 1.93605 1.85205 1.84730 1.29809 1.55931 1.87740 1.25971 1.18358 1.20994 0.95165 0.99885 0.80435 0.87985 1.22058 0.95852 0.97431 1.01832 1.21887 1.00203 0.91724 1.02562 1.24390 0.99771 0.83766 1.00196 0.84473 1.44910 0.98643 1.04226 1.01802 1.94591 1.43641 1.32434 1.67504 1.94565 1.57237 1.88160 0.97771 1.21873 0.90151 1.00263 1.04164 1.21895 1.01482 0.92183 1.00760 1.19808 0.95873 1.01354 0.95157 1.25912 1.03299 1.00201 1.05009 1.84570 1.26787 1.27195 1.18819 0.75948 0.83690 1.15546 1.14685 0.74363 0.89456 0.88045 0.88765 0.89574 0.88887 0.89404 0.88973 0.88984 0.83096 0.80685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.65 9.71 -60.02 -0.58 -1.24 16 2 C -0.07 -0.02 2.38 36.00 0.09 0.07 16 3 Si 0.67 -1.19 31.10 -169.99 -5.29 -6.47 16 4 C -0.10 -0.01 5.77 -36.00 -0.21 -0.22 16 5 C -0.66 0.07 5.71 -41.21 -0.24 -0.17 16 6 S 2.72 2.77 4.13 -107.50 -0.44 2.33 16 7 O -0.94 -2.46 16.20 -64.93 -1.05 -3.51 16 8 O -0.94 -4.56 17.06 -62.26 -1.06 -5.62 16 9 N -1.12 2.86 4.52 -4.89 -0.02 2.84 16 10 C 0.14 -0.65 1.85 -67.93 -0.13 -0.78 16 11 H 0.10 -0.59 6.24 -51.93 -0.32 -0.91 16 12 C -0.13 0.53 5.64 -26.73 -0.15 0.38 16 13 C -0.13 0.33 5.15 -26.73 -0.14 0.19 16 14 C 0.02 -0.04 2.88 -67.92 -0.20 -0.24 16 15 H 0.14 -0.58 8.09 -51.93 -0.42 -1.00 16 16 N -0.02 -0.03 3.82 -4.88 -0.02 -0.05 16 17 O -0.16 -0.63 19.21 -29.46 -0.57 -1.20 16 18 O -0.16 -0.57 18.51 -29.46 -0.55 -1.11 16 19 C -0.13 0.52 5.12 -26.73 -0.14 0.38 16 20 C -0.12 0.76 5.40 -26.73 -0.14 0.62 16 21 C -0.09 0.21 9.04 -41.21 -0.37 -0.16 16 22 C -0.21 0.53 11.23 29.04 0.33 0.86 16 23 S 0.16 -0.25 20.87 -107.50 -2.24 -2.49 16 24 H 0.39 -0.97 8.49 45.56 0.39 -0.58 16 25 H 0.15 0.11 7.96 -51.93 -0.41 -0.30 16 26 H -0.23 0.12 7.11 56.52 0.40 0.52 16 27 H -0.22 -0.15 7.11 56.52 0.40 0.25 16 28 H 0.42 -1.41 6.78 -34.47 -0.23 -1.64 16 29 H 0.09 -0.51 8.14 -51.93 -0.42 -0.93 16 30 H 0.10 -0.26 7.78 -51.93 -0.40 -0.66 16 31 H 0.09 -0.16 7.30 -51.93 -0.38 -0.54 16 32 H 0.09 -0.20 8.14 -51.93 -0.42 -0.63 16 33 H 0.09 -0.34 6.40 -51.93 -0.33 -0.67 16 34 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 35 H 0.09 -0.65 7.35 -51.93 -0.38 -1.03 16 36 H 0.09 -0.70 8.14 -51.92 -0.42 -1.12 16 37 H 0.15 -0.78 4.54 -52.49 -0.24 -1.02 16 38 H 0.18 -0.88 8.06 -52.49 -0.42 -1.30 16 LS Contribution 331.05 15.07 4.99 4.99 Total: 0.00 -10.78 331.05 -12.18 -22.95 By element: Atomic # 1 Polarization: -8.29 SS G_CDS: -4.05 Total: -12.34 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.29 Total: 0.94 kcal Atomic # 7 Polarization: 2.82 SS G_CDS: -0.04 Total: 2.78 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -3.81 Total: -12.69 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.29 Total: -6.47 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.69 Total: -0.16 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -10.78 -12.18 -22.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_14772022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.709 kcal (2) G-P(sol) polarization free energy of solvation -10.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds