Wall clock time and date at job start Mon Mar 8 2021 12:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47365 * 2 1 4 4 C 1.50698 * 109.46868 * 120.00020 * 2 1 3 5 5 C 1.33391 * 125.20750 * 39.18922 * 4 2 1 6 6 S 1.76203 * 122.53493 * 0.06280 * 5 4 2 7 7 O 1.42097 * 106.39808 * 278.89620 * 6 5 4 8 8 O 1.42099 * 106.40209 * 51.81672 * 6 5 4 9 9 N 1.65594 * 107.21663 * 165.35906 * 6 5 4 10 10 C 1.46502 * 120.00267 * 66.77809 * 9 6 5 11 11 H 1.09000 * 109.47024 * 336.21238 * 10 9 6 12 12 C 1.53001 * 109.47134 * 96.21291 * 10 9 6 13 13 C 1.52999 * 109.47295 * 59.99691 * 12 10 9 14 14 C 1.53000 * 109.46665 * 60.00233 * 13 12 10 15 15 H 1.09003 * 109.47079 * 60.00629 * 14 13 12 16 16 N 1.46510 * 109.46877 * 179.97438 * 14 13 12 17 17 O 1.21802 * 119.99677 * 239.99745 * 16 14 13 18 18 O 1.21798 * 119.99960 * 60.00390 * 16 14 13 19 19 C 1.53002 * 109.47435 * 299.99804 * 14 13 12 20 20 C 1.52997 * 109.47186 * 216.20980 * 10 9 6 21 21 C 1.38418 * 114.92445 * 180.02562 * 5 4 2 22 22 C 1.33392 * 114.92232 * 0.02562 * 21 5 4 23 23 S 1.75884 * 109.59149 * 359.97438 * 22 21 5 24 24 H 0.96696 * 113.99999 * 305.43447 * 1 2 3 25 25 H 1.09000 * 109.47509 * 239.99590 * 2 1 3 26 26 H 1.48502 * 110.00197 * 178.68005 * 3 2 1 27 27 H 1.48499 * 109.99839 * 299.99745 * 3 2 1 28 28 H 0.97004 * 119.99986 * 246.77598 * 9 6 5 29 29 H 1.08992 * 109.47634 * 180.02562 * 12 10 9 30 30 H 1.09004 * 109.46876 * 300.00244 * 12 10 9 31 31 H 1.08996 * 109.47636 * 300.00467 * 13 12 10 32 32 H 1.09004 * 109.47165 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.46976 * 300.00420 * 19 14 13 34 34 H 1.09001 * 109.46897 * 180.02562 * 19 14 13 35 35 H 1.08997 * 109.47063 * 60.00421 * 20 10 9 36 36 H 1.09007 * 109.47112 * 180.02562 * 20 10 9 37 37 H 1.07994 * 122.54089 * 180.02562 * 21 5 4 38 38 H 1.08001 * 125.20480 * 179.73201 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.3912 -1.8102 1.7579 6 16 -0.0220 -2.5995 1.0616 7 8 -1.1537 -1.8711 1.5176 8 8 0.2690 -2.8023 -0.3144 9 7 -0.1286 -4.1045 1.7439 10 6 -0.4295 -4.2422 3.1711 11 1 -0.1404 -3.3300 3.6930 12 6 -1.9293 -4.4817 3.3553 13 6 -2.3352 -5.7621 2.6227 14 6 -1.5553 -6.9469 3.1963 15 1 -1.7792 -7.0494 4.2582 16 7 -1.9443 -8.1731 2.4952 17 8 -2.4344 -9.0998 3.1154 18 8 -1.7775 -8.2658 1.2923 19 6 -0.0554 -6.7075 3.0121 20 6 0.3503 -5.4270 3.7447 21 6 2.0253 -2.2847 2.8930 22 6 3.0802 -1.5701 3.2879 23 16 3.3188 -0.2157 2.1915 24 1 -0.3933 0.5121 0.7197 25 1 1.7924 -0.5139 -0.8899 26 1 3.5347 1.7702 0.0321 27 1 1.5616 2.4678 -1.2085 28 1 0.0080 -4.8951 1.1986 29 1 -2.1533 -4.5837 4.4171 30 1 -2.4849 -3.6377 2.9466 31 1 -2.1113 -5.6598 1.5609 32 1 -3.4038 -5.9325 2.7536 33 1 0.1684 -6.6050 1.9503 34 1 0.5001 -7.5517 3.4204 35 1 1.4189 -5.2564 3.6135 36 1 0.1261 -5.5297 4.8065 37 1 1.6914 -3.1667 3.4192 38 1 3.6917 -1.7876 4.1512 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623258_14772022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:40 Heat of formation + Delta-G solvation = -73.314862 kcal Electronic energy + Delta-G solvation = -28042.433337 eV Core-core repulsion = 23915.667600 eV Total energy + Delta-G solvation = -4126.765736 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.058 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.38334 -40.27522 -39.68395 -38.21166 -37.75884 -37.53203 -36.82954 -35.18311 -32.21071 -31.84784 -31.26342 -27.61430 -27.19142 -24.60234 -24.09602 -23.36670 -21.76406 -21.39033 -20.24097 -19.81166 -19.38558 -19.21122 -18.56686 -18.27397 -18.03117 -17.20210 -17.16290 -16.63146 -16.26740 -15.93282 -15.59508 -15.42541 -15.24512 -14.60174 -14.36433 -14.15603 -14.13682 -14.10766 -13.87501 -13.54381 -13.19950 -13.10010 -12.93880 -12.79071 -12.67711 -12.62695 -12.57342 -12.44385 -12.20089 -12.17313 -12.15021 -11.83701 -11.58724 -11.53475 -11.07866 -10.65878 -10.17495 -9.77599 -5.20152 -0.75307 -0.65788 -0.52555 0.32620 0.64588 0.71190 1.02143 1.14904 1.46101 1.79434 1.96074 2.68179 3.01513 3.06861 3.12584 3.27826 3.45763 3.54995 3.59533 3.76859 3.87107 3.98091 4.02971 4.07042 4.15237 4.20739 4.26715 4.45189 4.48436 4.62807 4.71234 4.74169 4.85847 4.92977 4.97435 5.11793 5.14574 5.20789 5.23897 5.88840 6.37262 6.37639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.092 4.092 3 Si 0.759 3.241 4 C -0.121 4.121 5 C -0.668 4.668 6 S 2.728 3.272 7 O -0.965 6.965 8 O -0.993 6.993 9 N -1.110 6.110 10 C 0.133 3.867 11 H 0.121 0.879 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.018 3.982 15 H 0.162 0.838 16 N -0.013 5.013 17 O -0.189 6.189 18 O -0.188 6.188 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.101 4.101 22 C -0.201 4.201 23 S 0.169 5.831 24 H 0.403 0.597 25 H 0.129 0.871 26 H -0.243 1.243 27 H -0.263 1.263 28 H 0.423 0.577 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.182 0.818 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 4.400 10.083 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.201 4.201 3 Si 0.657 3.343 4 C -0.242 4.242 5 C -0.769 4.769 6 S 2.815 3.185 7 O -0.954 6.954 8 O -0.983 6.983 9 N -0.874 5.874 10 C 0.027 3.973 11 H 0.139 0.861 12 C -0.170 4.170 13 C -0.164 4.164 14 C -0.078 4.078 15 H 0.179 0.821 16 N 0.505 4.495 17 O -0.406 6.406 18 O -0.406 6.406 19 C -0.165 4.165 20 C -0.155 4.155 21 C -0.128 4.128 22 C -0.337 4.337 23 S 0.433 5.567 24 H 0.255 0.745 25 H 0.146 0.854 26 H -0.168 1.168 27 H -0.188 1.188 28 H 0.261 0.739 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.199 0.801 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.437 6.977 8.982 13.068 hybrid contribution -0.626 -2.549 -0.638 2.701 sum 5.811 4.428 8.344 11.090 Atomic orbital electron populations 1.86537 1.16675 1.76629 1.56331 1.25398 0.85723 1.13528 0.95486 0.93812 0.79908 0.73122 0.87446 1.25077 1.00373 0.98072 1.00636 1.29808 1.25764 1.10014 1.11323 1.00867 0.73395 0.72275 0.71933 1.93538 1.47973 1.71752 1.82187 1.93539 1.85912 1.85616 1.33233 1.55679 1.87565 1.24586 1.19567 1.21332 0.95110 1.01714 0.79115 0.86095 1.22089 0.96135 0.95627 1.03139 1.21905 0.99961 0.92516 1.02037 1.24733 1.00888 0.81393 1.00788 0.82057 1.45571 0.97434 1.04979 1.01487 1.94570 1.44556 1.34177 1.67341 1.94556 1.58207 1.88757 0.99076 1.21982 0.88600 1.01755 1.04201 1.21960 1.02127 0.89625 1.01741 1.20102 0.95829 1.02413 0.94504 1.26318 1.03154 0.98993 1.05194 1.84532 1.25554 1.27890 1.18717 0.74546 0.85423 1.16835 1.18792 0.73910 0.86650 0.89694 0.90328 0.90166 0.89799 0.88916 0.87117 0.86161 0.80124 0.77718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.60 9.71 -125.28 -1.22 -3.82 16 2 C -0.09 -0.21 2.38 71.24 0.17 -0.04 16 3 Si 0.76 -1.98 31.10 68.60 2.13 0.15 16 4 C -0.12 -0.08 5.77 24.59 0.14 0.07 16 5 C -0.67 0.19 5.71 21.22 0.12 0.31 16 6 S 2.73 8.83 4.13 -56.49 -0.23 8.59 16 7 O -0.96 -6.37 16.20 -120.59 -1.95 -8.32 16 8 O -0.99 -12.25 17.06 -123.13 -2.10 -14.35 16 9 N -1.11 5.66 4.52 -169.39 -0.77 4.89 16 10 C 0.13 -1.46 1.85 44.99 0.08 -1.38 16 11 H 0.12 -1.73 6.24 -2.39 -0.01 -1.75 16 12 C -0.13 1.19 5.64 30.59 0.17 1.36 16 13 C -0.13 0.64 5.15 30.59 0.16 0.80 16 14 C 0.02 -0.10 2.88 44.99 0.13 0.03 16 15 H 0.16 -1.70 8.09 -2.39 -0.02 -1.72 16 16 N -0.01 -0.06 3.82 -169.36 -0.65 -0.70 16 17 O -0.19 -1.63 19.21 18.88 0.36 -1.27 16 18 O -0.19 -1.69 18.51 18.89 0.35 -1.34 16 19 C -0.13 1.22 5.12 30.59 0.16 1.38 16 20 C -0.12 1.78 5.40 30.59 0.17 1.95 16 21 C -0.10 0.68 9.04 21.22 0.19 0.87 16 22 C -0.20 1.55 11.23 66.72 0.75 2.30 16 23 S 0.17 -0.68 20.87 -56.49 -1.18 -1.86 16 24 H 0.40 -1.22 8.49 -74.06 -0.63 -1.85 16 25 H 0.13 0.59 7.96 -2.39 -0.02 0.57 16 26 H -0.24 0.22 7.11 99.48 0.71 0.92 16 27 H -0.26 -0.86 7.11 99.48 0.71 -0.15 16 28 H 0.42 -2.53 6.78 -96.74 -0.66 -3.19 16 29 H 0.12 -1.67 8.14 -2.39 -0.02 -1.69 16 30 H 0.08 -0.42 7.78 -2.38 -0.02 -0.44 16 31 H 0.08 -0.15 7.30 -2.39 -0.02 -0.17 16 32 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.08 -0.63 6.40 -2.39 -0.02 -0.64 16 34 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.11 -2.01 7.35 -2.39 -0.02 -2.03 16 36 H 0.12 -2.41 8.14 -2.38 -0.02 -2.43 16 37 H 0.18 -2.50 4.54 -2.91 -0.01 -2.51 16 38 H 0.21 -2.88 8.06 -2.91 -0.02 -2.90 16 Total: 0.00 -28.52 331.05 -3.12 -31.64 By element: Atomic # 1 Polarization: -21.15 SS G_CDS: -0.11 Total: -21.25 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 2.24 Total: 7.63 kcal Atomic # 7 Polarization: 5.60 SS G_CDS: -1.41 Total: 4.19 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -4.56 Total: -29.09 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.13 Total: 0.15 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -1.41 Total: 6.73 kcal Total: -28.52 -3.12 -31.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_14772022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.676 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds