Wall clock time and date at job start Mon Mar 8 2021 12:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86305 * 109.46672 * 2 1 4 4 C 1.50703 * 109.47004 * 240.00538 * 2 1 3 5 5 C 1.33386 * 125.20374 * 300.27989 * 4 2 1 6 6 C 1.38423 * 114.92099 * 180.20933 * 5 4 2 7 7 S 1.76201 * 122.53922 * 179.75847 * 6 5 4 8 8 O 1.42101 * 106.39872 * 156.19948 * 7 6 5 9 9 O 1.42094 * 106.40245 * 23.28093 * 7 6 5 10 10 N 1.65599 * 107.21886 * 269.73895 * 7 6 5 11 11 C 1.46496 * 120.00153 * 65.00223 * 10 7 6 12 12 H 1.09002 * 109.47021 * 334.99838 * 11 10 7 13 13 C 1.53002 * 109.47313 * 94.99826 * 11 10 7 14 14 C 1.52996 * 109.47340 * 59.99726 * 13 11 10 15 15 C 1.53005 * 109.46543 * 60.00393 * 14 13 11 16 16 H 1.09000 * 109.47360 * 60.00118 * 15 14 13 17 17 N 1.46506 * 109.46831 * 180.02562 * 15 14 13 18 18 O 1.21801 * 119.99643 * 240.00011 * 17 15 14 19 19 O 1.21795 * 120.00068 * 59.99423 * 17 15 14 20 20 C 1.53002 * 109.46982 * 299.99826 * 15 14 13 21 21 C 1.52992 * 109.47444 * 214.99726 * 11 10 7 22 22 C 1.33391 * 114.92206 * 359.49846 * 6 5 4 23 23 S 1.75885 * 109.59162 * 0.26389 * 22 6 5 24 24 H 0.96694 * 114.00336 * 60.00468 * 1 2 3 25 25 H 1.08997 * 109.47319 * 119.99986 * 2 1 3 26 26 H 1.48493 * 109.99897 * 60.00407 * 3 2 1 27 27 H 1.48501 * 109.99647 * 181.32086 * 3 2 1 28 28 H 1.07997 * 122.54128 * 359.97036 * 5 4 2 29 29 H 0.96996 * 119.99717 * 244.99341 * 10 7 6 30 30 H 1.09004 * 109.47059 * 180.02562 * 13 11 10 31 31 H 1.09004 * 109.46930 * 300.00123 * 13 11 10 32 32 H 1.08992 * 109.47346 * 300.00686 * 14 13 11 33 33 H 1.09001 * 109.47364 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.46930 * 180.02562 * 20 15 14 35 35 H 1.09004 * 109.47059 * 299.99867 * 20 15 14 36 36 H 1.08996 * 109.47747 * 179.97438 * 21 11 10 37 37 H 1.09001 * 109.47066 * 59.99984 * 21 11 10 38 38 H 1.07993 * 125.20272 * 180.24966 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6694 -1.9795 -1.5466 6 6 2.2446 -2.4172 -2.7271 7 16 2.0352 -4.0590 -3.3316 8 8 2.2491 -4.0000 -4.7352 9 8 0.8369 -4.5516 -2.7481 10 7 3.2685 -4.9718 -2.7086 11 6 3.3548 -5.1980 -1.2638 12 1 2.8504 -4.3870 -0.7383 13 6 2.6829 -6.5275 -0.9146 14 6 3.3906 -7.6658 -1.6522 15 6 4.8606 -7.7108 -1.2298 16 1 4.9248 -7.8791 -0.1548 17 7 5.5385 -8.8005 -1.9365 18 8 6.0588 -9.7040 -1.3068 19 8 5.5818 -8.8030 -3.1537 20 6 5.5324 -6.3813 -1.5790 21 6 4.8245 -5.2430 -0.8415 22 6 2.9649 -1.5004 -3.3752 23 16 2.9462 0.0097 -2.4736 24 1 -0.3933 0.4416 -0.7650 25 1 1.7923 -0.5138 0.8899 26 1 1.5614 2.4679 1.2085 27 1 3.5344 1.7704 -0.0322 28 1 1.0583 -2.6184 -0.9263 29 1 3.9336 -5.3568 -3.3004 30 1 2.7467 -6.6955 0.1605 31 1 1.6357 -6.4954 -1.2155 32 1 3.3265 -7.4976 -2.7271 33 1 2.9123 -8.6130 -1.4031 34 1 6.5798 -6.4136 -1.2785 35 1 5.4683 -6.2131 -2.6541 36 1 4.8888 -5.4108 0.2336 37 1 5.3032 -4.2959 -1.0902 38 1 3.4809 -1.6610 -4.3102 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623258_15065232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:45 Heat of formation + Delta-G solvation = -75.491843 kcal Electronic energy + Delta-G solvation = -27331.329188 eV Core-core repulsion = 23204.469050 eV Total energy + Delta-G solvation = -4126.860137 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.058 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.34152 -40.46915 -39.64562 -38.33399 -37.68192 -37.38371 -36.97222 -35.36118 -32.54412 -31.97428 -31.48288 -27.43775 -27.20030 -25.09415 -24.46609 -23.49399 -21.82665 -21.37927 -20.26653 -19.77465 -19.38907 -19.33748 -18.85436 -18.25393 -17.97734 -17.78964 -17.29602 -16.61400 -16.47091 -16.00202 -15.85109 -15.53717 -15.10102 -14.84872 -14.51885 -14.40115 -14.34790 -14.24420 -14.05832 -13.89248 -13.27246 -13.17190 -13.08291 -13.03275 -12.90084 -12.65960 -12.62289 -12.45630 -12.37231 -12.34816 -12.13122 -11.97342 -11.73909 -11.71510 -10.97536 -10.80671 -10.33162 -10.02727 -5.35348 -0.90595 -0.62755 -0.43209 0.16027 0.43053 0.65351 0.81782 1.01892 1.37584 1.70346 1.85365 2.56805 2.74645 2.82392 3.05853 3.13171 3.23335 3.26013 3.43866 3.46450 3.56372 3.65875 3.68220 3.77931 3.83070 4.04959 4.12375 4.15904 4.19457 4.36392 4.40238 4.47525 4.54156 4.55319 4.73341 4.76772 4.83971 4.90553 5.34887 5.60735 6.29010 6.61870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.228 4.228 5 C -0.048 4.048 6 C -0.689 4.689 7 S 2.707 3.293 8 O -0.952 6.952 9 O -0.944 6.944 10 N -1.112 6.112 11 C 0.150 3.850 12 H 0.099 0.901 13 C -0.134 4.134 14 C -0.124 4.124 15 C 0.016 3.984 16 H 0.137 0.863 17 N -0.019 5.019 18 O -0.163 6.163 19 O -0.156 6.156 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.082 4.082 23 S 0.162 5.838 24 H 0.383 0.617 25 H 0.126 0.874 26 H -0.230 1.230 27 H -0.237 1.237 28 H 0.157 0.843 29 H 0.420 0.580 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 6.136 2.716 6.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.140 4.140 3 Si 0.553 3.447 4 C -0.346 4.346 5 C -0.076 4.076 6 C -0.789 4.789 7 S 2.794 3.206 8 O -0.942 6.942 9 O -0.934 6.934 10 N -0.874 5.874 11 C 0.042 3.958 12 H 0.117 0.883 13 C -0.174 4.174 14 C -0.163 4.163 15 C -0.081 4.081 16 H 0.155 0.845 17 N 0.504 4.496 18 O -0.382 6.382 19 O -0.377 6.377 20 C -0.164 4.164 21 C -0.159 4.159 22 C -0.221 4.221 23 S 0.426 5.574 24 H 0.230 0.770 25 H 0.143 0.857 26 H -0.153 1.153 27 H -0.161 1.161 28 H 0.175 0.825 29 H 0.257 0.743 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.176 8.274 3.475 9.051 hybrid contribution 0.311 -1.786 0.296 1.837 sum 1.487 6.487 3.771 7.650 Atomic orbital electron populations 1.86542 1.16303 1.81672 1.49248 1.24439 0.85471 1.09147 0.94926 0.94967 0.82048 0.77596 0.90111 1.25109 1.07654 0.98946 1.02860 1.19618 0.98213 0.95308 0.94483 1.30031 1.14356 1.25995 1.08516 1.01738 0.73130 0.72781 0.72994 1.93633 1.85436 1.86762 1.28343 1.93616 1.42983 1.78075 1.78752 1.55794 1.48608 1.67658 1.15298 1.20862 0.96824 0.98340 0.79734 0.88271 1.22090 1.01554 0.92513 1.01226 1.21877 0.89305 1.01541 1.03543 1.24395 0.96181 0.87383 1.00185 0.84523 1.44909 0.99715 1.03069 1.01877 1.94594 1.45909 1.30017 1.67676 1.94558 1.63188 1.83485 0.96497 1.21886 1.00429 0.90612 1.03517 1.21814 0.94167 0.98619 1.01274 1.25934 0.98026 0.96004 1.02122 1.84461 1.46579 1.12900 1.13458 0.76956 0.85707 1.15301 1.16126 0.82506 0.74327 0.89506 0.88037 0.88768 0.89617 0.89493 0.88930 0.89239 0.89028 0.79657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.70 12.86 -35.23 -0.45 0.24 16 2 C -0.03 0.06 2.96 36.01 0.11 0.16 16 3 Si 0.65 -1.68 30.97 -169.99 -5.26 -6.95 16 4 C -0.23 0.42 5.72 -36.00 -0.21 0.22 16 5 C -0.05 0.06 9.12 -41.21 -0.38 -0.31 16 6 C -0.69 0.96 5.72 -41.21 -0.24 0.72 16 7 S 2.71 -1.41 5.71 -107.50 -0.61 -2.02 16 8 O -0.95 -2.48 17.64 -57.17 -1.01 -3.49 16 9 O -0.94 -2.08 16.89 -57.17 -0.97 -3.05 16 10 N -1.11 3.97 4.74 -4.90 -0.02 3.95 16 11 C 0.15 -0.71 2.98 -67.94 -0.20 -0.91 16 12 H 0.10 -0.56 7.41 -51.93 -0.38 -0.95 16 13 C -0.13 0.55 5.64 -26.73 -0.15 0.40 16 14 C -0.12 0.35 5.15 -26.73 -0.14 0.21 16 15 C 0.02 -0.04 2.88 -67.92 -0.20 -0.24 16 16 H 0.14 -0.55 8.09 -51.93 -0.42 -0.97 16 17 N -0.02 -0.03 3.82 -4.88 -0.02 -0.05 16 18 O -0.16 -0.63 19.21 -29.46 -0.57 -1.20 16 19 O -0.16 -0.52 18.50 -29.46 -0.55 -1.07 16 20 C -0.13 0.53 5.12 -26.73 -0.14 0.39 16 21 C -0.12 0.70 5.63 -26.74 -0.15 0.55 16 22 C -0.08 0.17 10.70 29.04 0.31 0.49 16 23 S 0.16 -0.42 20.58 -107.50 -2.21 -2.63 16 24 H 0.38 -1.85 8.70 45.56 0.40 -1.46 16 25 H 0.13 -0.32 7.96 -51.93 -0.41 -0.73 16 26 H -0.23 -0.06 7.11 56.52 0.40 0.34 16 27 H -0.24 0.18 7.11 56.52 0.40 0.58 16 28 H 0.16 -0.26 7.96 -52.49 -0.42 -0.67 16 29 H 0.42 -1.92 6.81 -34.47 -0.23 -2.15 16 30 H 0.09 -0.49 8.14 -51.93 -0.42 -0.91 16 31 H 0.10 -0.27 7.64 -51.93 -0.40 -0.67 16 32 H 0.09 -0.20 7.33 -51.93 -0.38 -0.59 16 33 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 34 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 35 H 0.09 -0.38 6.39 -51.93 -0.33 -0.71 16 36 H 0.09 -0.62 8.14 -51.93 -0.42 -1.04 16 37 H 0.09 -0.58 8.14 -51.93 -0.42 -1.00 16 38 H 0.19 -0.71 8.00 -52.49 -0.42 -1.13 16 LS Contribution 343.75 15.07 5.18 5.18 Total: 0.00 -10.69 343.75 -12.18 -22.87 By element: Atomic # 1 Polarization: -9.15 SS G_CDS: -4.31 Total: -13.46 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.37 Total: 1.67 kcal Atomic # 7 Polarization: 3.94 SS G_CDS: -0.04 Total: 3.90 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -3.54 Total: -8.56 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: -5.26 Total: -6.95 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.83 Total: -4.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -10.69 -12.18 -22.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_15065232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.625 kcal (2) G-P(sol) polarization free energy of solvation -10.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds