Wall clock time and date at job start Mon Mar 8 2021 12:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86305 * 109.46672 * 2 1 4 4 C 1.50703 * 109.47004 * 240.00538 * 2 1 3 5 5 C 1.33386 * 125.20374 * 300.27989 * 4 2 1 6 6 C 1.38423 * 114.92099 * 180.20933 * 5 4 2 7 7 S 1.76201 * 122.53922 * 179.75847 * 6 5 4 8 8 O 1.42101 * 106.39872 * 156.19948 * 7 6 5 9 9 O 1.42094 * 106.40245 * 23.28093 * 7 6 5 10 10 N 1.65599 * 107.21886 * 269.73895 * 7 6 5 11 11 C 1.46496 * 120.00153 * 65.00223 * 10 7 6 12 12 H 1.09002 * 109.47021 * 334.99838 * 11 10 7 13 13 C 1.53002 * 109.47313 * 94.99826 * 11 10 7 14 14 C 1.52996 * 109.47340 * 59.99726 * 13 11 10 15 15 C 1.53005 * 109.46543 * 60.00393 * 14 13 11 16 16 H 1.09000 * 109.47360 * 60.00118 * 15 14 13 17 17 N 1.46506 * 109.46831 * 180.02562 * 15 14 13 18 18 O 1.21801 * 119.99643 * 240.00011 * 17 15 14 19 19 O 1.21795 * 120.00068 * 59.99423 * 17 15 14 20 20 C 1.53002 * 109.46982 * 299.99826 * 15 14 13 21 21 C 1.52992 * 109.47444 * 214.99726 * 11 10 7 22 22 C 1.33391 * 114.92206 * 359.49846 * 6 5 4 23 23 S 1.75885 * 109.59162 * 0.26389 * 22 6 5 24 24 H 0.96694 * 114.00336 * 60.00468 * 1 2 3 25 25 H 1.08997 * 109.47319 * 119.99986 * 2 1 3 26 26 H 1.48493 * 109.99897 * 60.00407 * 3 2 1 27 27 H 1.48501 * 109.99647 * 181.32086 * 3 2 1 28 28 H 1.07997 * 122.54128 * 359.97036 * 5 4 2 29 29 H 0.96996 * 119.99717 * 244.99341 * 10 7 6 30 30 H 1.09004 * 109.47059 * 180.02562 * 13 11 10 31 31 H 1.09004 * 109.46930 * 300.00123 * 13 11 10 32 32 H 1.08992 * 109.47346 * 300.00686 * 14 13 11 33 33 H 1.09001 * 109.47364 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.46930 * 180.02562 * 20 15 14 35 35 H 1.09004 * 109.47059 * 299.99867 * 20 15 14 36 36 H 1.08996 * 109.47747 * 179.97438 * 21 11 10 37 37 H 1.09001 * 109.47066 * 59.99984 * 21 11 10 38 38 H 1.07993 * 125.20272 * 180.24966 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6694 -1.9795 -1.5466 6 6 2.2446 -2.4172 -2.7271 7 16 2.0352 -4.0590 -3.3316 8 8 2.2491 -4.0000 -4.7352 9 8 0.8369 -4.5516 -2.7481 10 7 3.2685 -4.9718 -2.7086 11 6 3.3548 -5.1980 -1.2638 12 1 2.8504 -4.3870 -0.7383 13 6 2.6829 -6.5275 -0.9146 14 6 3.3906 -7.6658 -1.6522 15 6 4.8606 -7.7108 -1.2298 16 1 4.9248 -7.8791 -0.1548 17 7 5.5385 -8.8005 -1.9365 18 8 6.0588 -9.7040 -1.3068 19 8 5.5818 -8.8030 -3.1537 20 6 5.5324 -6.3813 -1.5790 21 6 4.8245 -5.2430 -0.8415 22 6 2.9649 -1.5004 -3.3752 23 16 2.9462 0.0097 -2.4736 24 1 -0.3933 0.4416 -0.7650 25 1 1.7923 -0.5138 0.8899 26 1 1.5614 2.4679 1.2085 27 1 3.5344 1.7704 -0.0322 28 1 1.0583 -2.6184 -0.9263 29 1 3.9336 -5.3568 -3.3004 30 1 2.7467 -6.6955 0.1605 31 1 1.6357 -6.4954 -1.2155 32 1 3.3265 -7.4976 -2.7271 33 1 2.9123 -8.6130 -1.4031 34 1 6.5798 -6.4136 -1.2785 35 1 5.4683 -6.2131 -2.6541 36 1 4.8888 -5.4108 0.2336 37 1 5.3032 -4.2959 -1.0902 38 1 3.4809 -1.6610 -4.3102 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623258_15065232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:44 Heat of formation + Delta-G solvation = -78.606045 kcal Electronic energy + Delta-G solvation = -27331.464230 eV Core-core repulsion = 23204.469050 eV Total energy + Delta-G solvation = -4126.995179 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.058 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.39802 -40.22009 -39.48220 -38.39235 -37.54926 -37.51980 -37.03669 -35.16930 -32.22147 -31.80857 -31.28145 -27.29775 -27.10786 -24.95236 -24.14423 -23.38444 -21.63929 -21.18807 -20.13501 -19.80506 -19.28454 -19.21127 -18.77754 -18.28852 -17.82323 -17.65707 -17.10817 -16.42874 -16.28087 -15.87685 -15.55258 -15.39402 -14.94482 -14.56606 -14.34650 -14.19996 -14.14297 -14.08116 -13.91589 -13.58813 -13.34157 -13.23296 -12.97276 -12.94185 -12.64613 -12.63617 -12.55337 -12.46208 -12.21653 -12.18927 -12.16967 -11.88094 -11.61062 -11.54922 -10.75171 -10.59293 -10.15912 -9.83868 -5.16326 -0.81672 -0.66041 -0.47217 0.34196 0.60381 0.69273 0.95837 1.20097 1.53110 1.85098 2.02237 2.65287 2.99214 3.05247 3.19084 3.42287 3.46903 3.57306 3.65181 3.76426 3.87307 3.91569 3.96919 4.08225 4.17964 4.23439 4.39145 4.42774 4.48360 4.62598 4.69354 4.74901 4.89537 4.90393 4.94614 5.05515 5.11859 5.17297 5.22664 5.91144 6.36991 6.63505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.028 4.028 3 Si 0.719 3.281 4 C -0.232 4.232 5 C -0.056 4.056 6 C -0.691 4.691 7 S 2.723 3.277 8 O -0.988 6.988 9 O -0.976 6.976 10 N -1.103 6.103 11 C 0.143 3.857 12 H 0.114 0.886 13 C -0.132 4.132 14 C -0.124 4.124 15 C 0.018 3.982 16 H 0.157 0.843 17 N -0.013 5.013 18 O -0.196 6.196 19 O -0.178 6.178 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.086 4.086 23 S 0.186 5.814 24 H 0.396 0.604 25 H 0.129 0.871 26 H -0.272 1.272 27 H -0.258 1.258 28 H 0.157 0.843 29 H 0.425 0.575 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 7.289 3.481 8.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.141 4.141 3 Si 0.622 3.378 4 C -0.350 4.350 5 C -0.085 4.085 6 C -0.793 4.793 7 S 2.811 3.189 8 O -0.978 6.978 9 O -0.966 6.966 10 N -0.866 5.866 11 C 0.037 3.963 12 H 0.132 0.868 13 C -0.172 4.172 14 C -0.162 4.162 15 C -0.078 4.078 16 H 0.174 0.826 17 N 0.506 4.494 18 O -0.411 6.411 19 O -0.399 6.399 20 C -0.164 4.164 21 C -0.150 4.150 22 C -0.225 4.225 23 S 0.450 5.550 24 H 0.247 0.753 25 H 0.146 0.854 26 H -0.198 1.198 27 H -0.183 1.183 28 H 0.175 0.825 29 H 0.263 0.737 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.630 9.388 4.218 10.420 hybrid contribution 0.155 -2.074 0.103 2.083 sum 1.786 7.313 4.321 8.680 Atomic orbital electron populations 1.86507 1.16740 1.82067 1.50392 1.24524 0.85231 1.09336 0.95027 0.94160 0.79703 0.75813 0.88154 1.25174 1.07765 0.98892 1.03121 1.19671 0.98503 0.95659 0.94626 1.29784 1.15249 1.25375 1.08859 1.00928 0.72903 0.73013 0.72019 1.93580 1.85992 1.87427 1.30790 1.93574 1.45067 1.78952 1.79041 1.55539 1.47920 1.67043 1.16143 1.21100 0.97975 0.98426 0.78828 0.86846 1.22109 1.00481 0.92223 1.02367 1.21896 0.89168 1.01930 1.03230 1.24711 0.95804 0.86589 1.00734 0.82563 1.45535 0.98962 1.03335 1.01609 1.94579 1.47366 1.31636 1.67551 1.94542 1.63782 1.83883 0.97691 1.21976 1.00644 0.90003 1.03744 1.21827 0.92735 0.98247 1.02142 1.26208 0.97644 0.96101 1.02567 1.84399 1.45803 1.12152 1.12663 0.75332 0.85394 1.19761 1.18301 0.82515 0.73657 0.87282 0.89456 0.89769 0.90232 0.89231 0.89247 0.87236 0.87751 0.78270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.71 12.86 -148.98 -1.92 -0.20 16 2 C -0.03 0.14 2.96 71.24 0.21 0.35 16 3 Si 0.72 -3.95 30.97 68.60 2.12 -1.82 16 4 C -0.23 1.06 5.72 24.59 0.14 1.20 16 5 C -0.06 0.18 9.12 21.22 0.19 0.37 16 6 C -0.69 2.18 5.72 21.22 0.12 2.30 16 7 S 2.72 -1.41 5.71 -56.49 -0.32 -1.73 16 8 O -0.99 -6.08 17.64 -128.00 -2.26 -8.34 16 9 O -0.98 -5.22 16.89 -128.00 -2.16 -7.38 16 10 N -1.10 7.99 4.74 -169.40 -0.80 7.19 16 11 C 0.14 -1.51 2.98 44.99 0.13 -1.38 16 12 H 0.11 -1.46 7.41 -2.39 -0.02 -1.48 16 13 C -0.13 1.16 5.64 30.59 0.17 1.33 16 14 C -0.12 0.67 5.15 30.59 0.16 0.83 16 15 C 0.02 -0.10 2.88 44.99 0.13 0.03 16 16 H 0.16 -1.46 8.09 -2.39 -0.02 -1.48 16 17 N -0.01 -0.05 3.82 -169.37 -0.65 -0.70 16 18 O -0.20 -1.73 19.21 18.88 0.36 -1.37 16 19 O -0.18 -1.42 18.50 18.89 0.35 -1.07 16 20 C -0.13 1.17 5.12 30.59 0.16 1.32 16 21 C -0.11 1.52 5.63 30.59 0.17 1.69 16 22 C -0.09 0.44 10.70 66.72 0.71 1.15 16 23 S 0.19 -1.17 20.58 -56.49 -1.16 -2.33 16 24 H 0.40 -4.08 8.70 -74.06 -0.64 -4.72 16 25 H 0.13 -0.75 7.96 -2.39 -0.02 -0.77 16 26 H -0.27 -0.39 7.11 99.48 0.71 0.32 16 27 H -0.26 0.55 7.11 99.48 0.71 1.25 16 28 H 0.16 -0.55 7.96 -2.91 -0.02 -0.57 16 29 H 0.43 -3.82 6.81 -96.75 -0.66 -4.48 16 30 H 0.11 -1.42 8.14 -2.39 -0.02 -1.44 16 31 H 0.09 -0.44 7.64 -2.38 -0.02 -0.46 16 32 H 0.08 -0.28 7.33 -2.39 -0.02 -0.30 16 33 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.09 -0.82 8.14 -2.38 -0.02 -0.84 16 35 H 0.09 -0.76 6.39 -2.39 -0.02 -0.77 16 36 H 0.11 -1.85 8.14 -2.39 -0.02 -1.87 16 37 H 0.10 -1.60 8.14 -2.39 -0.02 -1.62 16 38 H 0.20 -1.69 8.00 -2.91 -0.02 -1.72 16 Total: 0.00 -25.59 343.75 -4.27 -29.86 By element: Atomic # 1 Polarization: -21.16 SS G_CDS: -0.14 Total: -21.30 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 2.30 Total: 9.21 kcal Atomic # 7 Polarization: 7.94 SS G_CDS: -1.45 Total: 6.49 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -5.62 Total: -18.37 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.12 Total: -1.82 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -1.48 Total: -4.07 kcal Total: -25.59 -4.27 -29.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_15065232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.748 kcal (2) G-P(sol) polarization free energy of solvation -25.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds