Wall clock time and date at job start Mon Mar 8 2021 12:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33388 * 125.20273 * 2 1 4 4 C 1.50697 * 122.54243 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47179 * 65.23596 * 4 3 2 6 6 Si 1.86302 * 109.47001 * 305.23562 * 4 3 2 7 7 C 1.38426 * 114.91839 * 180.24680 * 3 2 1 8 8 S 1.76203 * 122.53806 * 179.72945 * 7 3 2 9 9 O 1.42099 * 106.40018 * 191.62255 * 8 7 3 10 10 O 1.42097 * 106.40143 * 324.54331 * 8 7 3 11 11 N 1.65606 * 107.21673 * 78.08254 * 8 7 3 12 12 C 1.46494 * 119.99716 * 64.05914 * 11 8 7 13 13 H 1.08999 * 109.47440 * 336.34969 * 12 11 8 14 14 C 1.52999 * 109.47354 * 96.35098 * 12 11 8 15 15 C 1.52998 * 109.47289 * 59.99356 * 14 12 11 16 16 C 1.53003 * 109.46959 * 60.00383 * 15 14 12 17 17 H 1.08998 * 109.47212 * 59.99828 * 16 15 14 18 18 N 1.46500 * 109.47537 * 180.02562 * 16 15 14 19 19 O 1.21798 * 120.00258 * 240.00231 * 18 16 15 20 20 O 1.21802 * 119.99769 * 59.99238 * 18 16 15 21 21 C 1.53007 * 109.47155 * 300.00194 * 16 15 14 22 22 C 1.52994 * 109.47084 * 59.99583 * 21 16 15 23 23 C 1.33390 * 114.92110 * 359.49830 * 7 3 2 24 24 C 1.50697 * 125.20466 * 180.21141 * 23 7 3 25 25 S 1.75878 * 125.20246 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47103 * 96.02853 * 1 2 3 27 27 H 1.08998 * 109.47502 * 216.02709 * 1 2 3 28 28 H 1.09007 * 109.47400 * 336.03554 * 1 2 3 29 29 H 1.08996 * 109.47575 * 185.23615 * 4 3 2 30 30 H 0.96702 * 113.99649 * 305.52077 * 5 4 3 31 31 H 1.48499 * 110.00022 * 58.68040 * 6 4 3 32 32 H 1.48507 * 110.00010 * 179.97438 * 6 4 3 33 33 H 0.96993 * 119.99880 * 244.05328 * 11 8 7 34 34 H 1.08998 * 109.47166 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.47093 * 299.99831 * 14 12 11 36 36 H 1.08999 * 109.47001 * 300.00722 * 15 14 12 37 37 H 1.08998 * 109.47459 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.46700 * 300.00204 * 21 16 15 39 39 H 1.08997 * 109.46971 * 179.97438 * 21 16 15 40 40 H 1.09006 * 109.47278 * 180.02562 * 22 21 16 41 41 H 1.08998 * 109.47054 * 60.00506 * 22 21 16 42 42 H 1.08994 * 109.47501 * 176.11402 * 24 23 7 43 43 H 1.09008 * 109.46630 * 296.11082 * 24 23 7 44 44 H 1.09001 * 109.47416 * 56.10478 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 1.0020 2.7121 1.2225 6 14 0.5326 2.6752 -1.4357 7 6 3.6379 0.8428 -0.0054 8 16 4.8356 2.1352 -0.0134 9 8 6.0865 1.5213 -0.2922 10 8 4.2905 3.1825 -0.8041 11 7 4.9359 2.7201 1.5327 12 6 5.4156 1.8551 2.6133 13 1 5.2602 0.8115 2.3395 14 6 6.9074 2.1054 2.8429 15 6 7.1256 3.5702 3.2271 16 6 6.3528 3.8814 4.5105 17 1 6.7096 3.2378 5.3146 18 7 6.5611 5.2841 4.8782 19 8 7.0674 5.5640 5.9500 20 8 6.2281 6.1704 4.1119 21 6 4.8609 3.6310 4.2809 22 6 4.6428 2.1662 3.8966 23 6 3.9750 -0.4478 0.0008 24 6 5.3860 -0.9772 0.0014 25 16 2.5209 -1.4371 0.0006 26 1 -0.3633 -0.1079 -1.0220 27 1 -0.3634 -0.8311 0.6044 28 1 -0.3634 0.9391 0.4174 29 1 2.5147 3.2085 -0.0942 30 1 0.3212 2.0524 1.4133 31 1 -0.5585 1.6727 -1.3367 32 1 -0.0376 4.0464 -1.4471 33 1 4.6772 3.6354 1.7226 34 1 7.2642 1.4621 3.6473 35 1 7.4580 1.8838 1.9287 36 1 6.7686 4.2138 2.4231 37 1 8.1883 3.7485 3.3912 38 1 4.5041 4.2746 3.4768 39 1 4.3105 3.8522 5.1953 40 1 3.5800 1.9879 3.7326 41 1 4.9997 1.5227 4.7007 42 1 5.3661 -2.0643 0.0767 43 1 5.8836 -0.6861 -0.9237 44 1 5.9288 -0.5638 0.8515 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623258_15065288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:49 Heat of formation + Delta-G solvation = -69.053494 kcal Electronic energy + Delta-G solvation = -32932.724656 eV Core-core repulsion = 28495.068469 eV Total energy + Delta-G solvation = -4437.656188 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.089 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.30321 -40.57502 -40.39480 -38.55835 -37.38839 -37.34619 -36.99941 -35.32394 -34.38374 -32.49842 -31.48457 -31.16733 -28.15250 -27.20876 -26.11723 -24.42539 -23.51375 -23.31493 -21.69006 -20.97640 -20.17772 -19.74213 -19.30614 -19.14863 -18.77217 -18.21673 -18.12734 -17.32384 -17.03980 -16.59545 -16.25391 -16.20031 -15.90033 -15.75123 -15.34702 -14.89567 -14.78611 -14.62463 -14.38257 -14.36823 -14.29908 -14.01054 -13.86379 -13.74461 -13.52714 -13.27698 -13.18759 -13.07787 -12.88486 -12.83987 -12.75350 -12.59965 -12.41953 -12.32935 -12.24126 -12.10878 -11.93682 -11.75085 -11.68132 -11.30324 -10.87271 -10.78660 -10.13168 -9.57159 -4.90112 -0.86479 -0.57361 -0.39474 0.23599 0.57183 0.69158 0.73215 1.29998 1.53376 1.82065 1.99419 2.54557 2.79402 2.86035 3.11480 3.16613 3.23851 3.30486 3.34159 3.48157 3.54235 3.57329 3.69144 3.79944 3.81773 3.87598 3.89607 4.06425 4.14854 4.19414 4.21089 4.33478 4.37184 4.43196 4.44728 4.51729 4.57107 4.61441 4.62659 4.77269 4.82904 4.86929 4.95073 5.07131 5.38608 5.65951 6.24934 6.65588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.195 4.195 3 C -0.057 4.057 4 C -0.091 4.091 5 O -0.524 6.524 6 Si 0.677 3.323 7 C -0.683 4.683 8 S 2.705 3.295 9 O -0.947 6.947 10 O -0.946 6.946 11 N -1.110 6.110 12 C 0.152 3.848 13 H 0.096 0.904 14 C -0.133 4.133 15 C -0.124 4.124 16 C 0.016 3.984 17 H 0.137 0.863 18 N -0.018 5.018 19 O -0.164 6.164 20 O -0.156 6.156 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.051 4.051 24 C -0.110 4.110 25 S 0.169 5.831 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.370 0.630 31 H -0.233 1.233 32 H -0.249 1.249 33 H 0.421 0.579 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 -8.164 0.262 8.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.313 4.313 3 C -0.068 4.068 4 C -0.202 4.202 5 O -0.332 6.332 6 Si 0.576 3.424 7 C -0.782 4.782 8 S 2.793 3.207 9 O -0.937 6.937 10 O -0.937 6.937 11 N -0.871 5.871 12 C 0.044 3.956 13 H 0.114 0.886 14 C -0.173 4.173 15 C -0.162 4.162 16 C -0.082 4.082 17 H 0.154 0.846 18 N 0.505 4.495 19 O -0.383 6.383 20 O -0.377 6.377 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.173 4.173 24 C -0.168 4.168 25 S 0.436 5.564 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.219 0.781 31 H -0.157 1.157 32 H -0.173 1.173 33 H 0.258 0.742 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.833 -9.744 -0.893 9.955 hybrid contribution -0.741 1.207 1.635 2.163 sum -2.574 -8.537 0.741 8.948 Atomic orbital electron populations 1.20812 0.87468 1.02941 1.04047 1.24304 1.00069 0.95504 1.11420 1.18458 0.90568 0.96515 1.01217 1.25395 1.03997 0.94330 0.96473 1.86679 1.53576 1.54228 1.38688 0.94470 0.80140 0.81918 0.85901 1.29460 1.11791 1.13250 1.23723 1.01709 0.73604 0.73193 0.72239 1.93606 1.39646 1.77655 1.82749 1.93543 1.79339 1.54565 1.66205 1.55727 1.81671 1.23460 1.26235 1.20837 0.93321 0.93966 0.87442 0.88649 1.22086 0.96307 0.94516 1.04384 1.21869 1.00598 0.99581 0.94196 1.24398 1.01516 0.79060 1.03176 0.84569 1.44906 0.98332 1.06018 1.00287 1.94588 1.42973 1.89980 1.10715 1.94563 1.52109 1.43447 1.47584 1.21875 0.90345 0.99570 1.04562 1.21811 1.02565 0.94498 0.96971 1.24668 1.00863 0.95015 0.96705 1.20936 0.87972 1.01724 1.06157 1.84431 0.94903 1.07991 1.69115 0.89163 0.90229 0.90990 0.84166 0.78088 1.15653 1.17345 0.74223 0.89533 0.88120 0.88760 0.89633 0.88861 0.89532 0.88800 0.89413 0.90278 0.87288 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.23 8.01 36.00 0.29 0.52 16 2 C -0.20 0.20 6.01 -36.00 -0.22 -0.02 16 3 C -0.06 0.00 4.50 -106.25 -0.48 -0.47 16 4 C -0.09 -0.06 2.61 36.00 0.09 0.03 16 5 O -0.52 -0.26 12.84 -35.23 -0.45 -0.71 16 6 Si 0.68 0.20 30.61 -169.99 -5.20 -5.01 16 7 C -0.68 0.26 5.65 -41.21 -0.23 0.03 16 8 S 2.71 0.08 5.27 -107.50 -0.57 -0.49 16 9 O -0.95 -1.02 14.10 -57.17 -0.81 -1.82 16 10 O -0.95 -2.63 15.15 -57.17 -0.87 -3.50 16 11 N -1.11 2.80 4.75 -4.89 -0.02 2.78 16 12 C 0.15 -0.65 2.99 -67.93 -0.20 -0.85 16 13 H 0.10 -0.52 6.80 -51.93 -0.35 -0.87 16 14 C -0.13 0.57 5.64 -26.73 -0.15 0.41 16 15 C -0.12 0.33 5.15 -26.73 -0.14 0.20 16 16 C 0.02 -0.03 2.88 -67.92 -0.20 -0.23 16 17 H 0.14 -0.51 8.09 -51.93 -0.42 -0.93 16 18 N -0.02 -0.04 3.82 -4.89 -0.02 -0.06 16 19 O -0.16 -0.69 19.21 -29.46 -0.57 -1.25 16 20 O -0.16 -0.60 18.50 -29.46 -0.55 -1.15 16 21 C -0.13 0.40 5.12 -26.73 -0.14 0.26 16 22 C -0.12 0.58 5.63 -26.73 -0.15 0.43 16 23 C -0.05 0.07 6.50 -36.00 -0.23 -0.16 16 24 C -0.11 0.30 8.60 36.00 0.31 0.61 16 25 S 0.17 -0.30 23.31 -107.50 -2.51 -2.80 16 26 H 0.09 -0.22 6.96 -51.93 -0.36 -0.58 16 27 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 28 H 0.07 -0.21 3.88 -51.93 -0.20 -0.41 16 29 H 0.14 0.20 4.52 -51.93 -0.23 -0.03 16 30 H 0.37 -0.80 6.18 45.56 0.28 -0.51 16 31 H -0.23 0.13 4.55 56.52 0.26 0.38 16 32 H -0.25 -0.83 7.11 56.52 0.40 -0.43 16 33 H 0.42 -1.26 6.78 -34.47 -0.23 -1.49 16 34 H 0.09 -0.51 8.14 -51.93 -0.42 -0.93 16 35 H 0.10 -0.34 7.78 -51.93 -0.40 -0.75 16 36 H 0.09 -0.18 7.29 -51.93 -0.38 -0.56 16 37 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.09 -0.24 6.40 -51.93 -0.33 -0.58 16 39 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 40 H 0.09 -0.43 8.14 -51.93 -0.42 -0.85 16 41 H 0.09 -0.55 8.14 -51.93 -0.42 -0.97 16 42 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 43 H 0.11 -0.22 7.33 -51.92 -0.38 -0.60 16 44 H 0.09 -0.37 6.60 -51.93 -0.34 -0.71 16 LS Contribution 364.10 15.07 5.49 5.49 Total: 0.00 -8.18 364.10 -13.17 -21.35 By element: Atomic # 1 Polarization: -7.93 SS G_CDS: -5.66 Total: -13.59 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.44 Total: 0.76 kcal Atomic # 7 Polarization: 2.76 SS G_CDS: -0.04 Total: 2.72 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -3.24 Total: -8.44 kcal Atomic # 14 Polarization: 0.20 SS G_CDS: -5.20 Total: -5.01 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -3.07 Total: -3.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -8.18 -13.17 -21.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_15065288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.699 kcal (2) G-P(sol) polarization free energy of solvation -8.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds