Wall clock time and date at job start Mon Mar 8 2021 12:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33388 * 125.20273 * 2 1 4 4 C 1.50697 * 122.54243 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47179 * 65.23596 * 4 3 2 6 6 Si 1.86302 * 109.47001 * 305.23562 * 4 3 2 7 7 C 1.38426 * 114.91839 * 180.24680 * 3 2 1 8 8 S 1.76203 * 122.53806 * 179.72945 * 7 3 2 9 9 O 1.42099 * 106.40018 * 191.62255 * 8 7 3 10 10 O 1.42097 * 106.40143 * 324.54331 * 8 7 3 11 11 N 1.65606 * 107.21673 * 78.08254 * 8 7 3 12 12 C 1.46494 * 119.99716 * 64.05914 * 11 8 7 13 13 H 1.08999 * 109.47440 * 336.34969 * 12 11 8 14 14 C 1.52999 * 109.47354 * 96.35098 * 12 11 8 15 15 C 1.52998 * 109.47289 * 59.99356 * 14 12 11 16 16 C 1.53003 * 109.46959 * 60.00383 * 15 14 12 17 17 H 1.08998 * 109.47212 * 59.99828 * 16 15 14 18 18 N 1.46500 * 109.47537 * 180.02562 * 16 15 14 19 19 O 1.21798 * 120.00258 * 240.00231 * 18 16 15 20 20 O 1.21802 * 119.99769 * 59.99238 * 18 16 15 21 21 C 1.53007 * 109.47155 * 300.00194 * 16 15 14 22 22 C 1.52994 * 109.47084 * 59.99583 * 21 16 15 23 23 C 1.33390 * 114.92110 * 359.49830 * 7 3 2 24 24 C 1.50697 * 125.20466 * 180.21141 * 23 7 3 25 25 S 1.75878 * 125.20246 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47103 * 96.02853 * 1 2 3 27 27 H 1.08998 * 109.47502 * 216.02709 * 1 2 3 28 28 H 1.09007 * 109.47400 * 336.03554 * 1 2 3 29 29 H 1.08996 * 109.47575 * 185.23615 * 4 3 2 30 30 H 0.96702 * 113.99649 * 305.52077 * 5 4 3 31 31 H 1.48499 * 110.00022 * 58.68040 * 6 4 3 32 32 H 1.48507 * 110.00010 * 179.97438 * 6 4 3 33 33 H 0.96993 * 119.99880 * 244.05328 * 11 8 7 34 34 H 1.08998 * 109.47166 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.47093 * 299.99831 * 14 12 11 36 36 H 1.08999 * 109.47001 * 300.00722 * 15 14 12 37 37 H 1.08998 * 109.47459 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.46700 * 300.00204 * 21 16 15 39 39 H 1.08997 * 109.46971 * 179.97438 * 21 16 15 40 40 H 1.09006 * 109.47278 * 180.02562 * 22 21 16 41 41 H 1.08998 * 109.47054 * 60.00506 * 22 21 16 42 42 H 1.08994 * 109.47501 * 176.11402 * 24 23 7 43 43 H 1.09008 * 109.46630 * 296.11082 * 24 23 7 44 44 H 1.09001 * 109.47416 * 56.10478 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 1.0020 2.7121 1.2225 6 14 0.5326 2.6752 -1.4357 7 6 3.6379 0.8428 -0.0054 8 16 4.8356 2.1352 -0.0134 9 8 6.0865 1.5213 -0.2922 10 8 4.2905 3.1825 -0.8041 11 7 4.9359 2.7201 1.5327 12 6 5.4156 1.8551 2.6133 13 1 5.2602 0.8115 2.3395 14 6 6.9074 2.1054 2.8429 15 6 7.1256 3.5702 3.2271 16 6 6.3528 3.8814 4.5105 17 1 6.7096 3.2378 5.3146 18 7 6.5611 5.2841 4.8782 19 8 7.0674 5.5640 5.9500 20 8 6.2281 6.1704 4.1119 21 6 4.8609 3.6310 4.2809 22 6 4.6428 2.1662 3.8966 23 6 3.9750 -0.4478 0.0008 24 6 5.3860 -0.9772 0.0014 25 16 2.5209 -1.4371 0.0006 26 1 -0.3633 -0.1079 -1.0220 27 1 -0.3634 -0.8311 0.6044 28 1 -0.3634 0.9391 0.4174 29 1 2.5147 3.2085 -0.0942 30 1 0.3212 2.0524 1.4133 31 1 -0.5585 1.6727 -1.3367 32 1 -0.0376 4.0464 -1.4471 33 1 4.6772 3.6354 1.7226 34 1 7.2642 1.4621 3.6473 35 1 7.4580 1.8838 1.9287 36 1 6.7686 4.2138 2.4231 37 1 8.1883 3.7485 3.3912 38 1 4.5041 4.2746 3.4768 39 1 4.3105 3.8522 5.1953 40 1 3.5800 1.9879 3.7326 41 1 4.9997 1.5227 4.7007 42 1 5.3661 -2.0643 0.0767 43 1 5.8836 -0.6861 -0.9237 44 1 5.9288 -0.5638 0.8515 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623258_15065288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:47 Heat of formation + Delta-G solvation = -68.052191 kcal Electronic energy + Delta-G solvation = -32932.681237 eV Core-core repulsion = 28495.068469 eV Total energy + Delta-G solvation = -4437.612768 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.089 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.39887 -40.47755 -40.19950 -38.58067 -37.54909 -37.37165 -37.03977 -35.17263 -34.22805 -32.21453 -31.31921 -30.98381 -28.07364 -27.18988 -25.98384 -24.14261 -23.43446 -23.21363 -21.50385 -20.87788 -20.09998 -19.81651 -19.29435 -19.04843 -18.66860 -18.28976 -18.08222 -17.16779 -16.98286 -16.45410 -16.13957 -16.11211 -15.80813 -15.50973 -15.24527 -14.70025 -14.56192 -14.47746 -14.20351 -14.15085 -14.11992 -13.96532 -13.69318 -13.57687 -13.45726 -13.28428 -13.08472 -12.98265 -12.77991 -12.71300 -12.64452 -12.59359 -12.43481 -12.25795 -12.20435 -12.16116 -11.89858 -11.63094 -11.55099 -11.27988 -10.77163 -10.63344 -9.98418 -9.45501 -4.94356 -0.79556 -0.66593 -0.45351 0.38502 0.68952 0.69810 0.80148 1.26829 1.46149 1.88947 1.98700 2.59711 2.99406 3.04871 3.19891 3.31370 3.44993 3.48353 3.56942 3.66548 3.76531 3.85290 3.96137 3.97430 4.03518 4.09562 4.18169 4.25555 4.41859 4.43489 4.47486 4.49439 4.60626 4.68346 4.69120 4.75385 4.84408 4.90317 4.94374 4.96199 5.11086 5.16374 5.18364 5.21538 5.23384 5.86582 6.36492 6.37717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.198 4.198 3 C -0.068 4.068 4 C -0.095 4.095 5 O -0.534 6.534 6 Si 0.704 3.296 7 C -0.691 4.691 8 S 2.712 3.288 9 O -0.961 6.961 10 O -0.982 6.982 11 N -1.106 6.106 12 C 0.145 3.855 13 H 0.114 0.886 14 C -0.129 4.129 15 C -0.124 4.124 16 C 0.019 3.981 17 H 0.160 0.840 18 N -0.013 5.013 19 O -0.190 6.190 20 O -0.185 6.185 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.051 4.051 24 C -0.116 4.116 25 S 0.195 5.805 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.381 0.619 31 H -0.212 1.212 32 H -0.299 1.299 33 H 0.422 0.578 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -10.924 1.084 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.316 4.316 3 C -0.079 4.079 4 C -0.206 4.206 5 O -0.344 6.344 6 Si 0.605 3.395 7 C -0.791 4.791 8 S 2.801 3.199 9 O -0.951 6.951 10 O -0.972 6.972 11 N -0.868 5.868 12 C 0.038 3.962 13 H 0.131 0.869 14 C -0.168 4.168 15 C -0.163 4.163 16 C -0.078 4.078 17 H 0.177 0.823 18 N 0.506 4.494 19 O -0.407 6.407 20 O -0.404 6.404 21 C -0.163 4.163 22 C -0.149 4.149 23 C -0.173 4.173 24 C -0.174 4.174 25 S 0.462 5.538 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.146 0.854 30 H 0.232 0.768 31 H -0.135 1.135 32 H -0.226 1.226 33 H 0.259 0.741 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.030 -12.510 -0.074 12.674 hybrid contribution -0.687 2.049 1.395 2.572 sum -2.717 -10.461 1.321 10.889 Atomic orbital electron populations 1.20919 0.86605 1.03810 1.04561 1.24508 1.00852 0.95661 1.10560 1.18368 0.90872 0.96156 1.02490 1.25348 1.03828 0.94919 0.96521 1.86648 1.54064 1.55007 1.38640 0.94193 0.80077 0.79425 0.85828 1.29297 1.11463 1.13402 1.24987 1.01230 0.73317 0.72801 0.72517 1.93584 1.40346 1.77809 1.83324 1.93498 1.79871 1.56018 1.67831 1.55586 1.81634 1.23723 1.25859 1.21111 0.93369 0.94569 0.87139 0.86861 1.22113 0.96243 0.93491 1.05001 1.21913 1.00263 1.00695 0.93398 1.24715 1.02453 0.76440 1.04146 0.82255 1.45541 0.97060 1.07334 0.99491 1.94568 1.43826 1.90744 1.11562 1.94555 1.52996 1.45101 1.47762 1.21930 0.89277 1.00853 1.04219 1.21810 1.02634 0.93303 0.97197 1.24880 1.01807 0.94767 0.95810 1.21069 0.87150 1.02979 1.06244 1.84345 0.94066 1.06989 1.68421 0.88921 0.88677 0.90681 0.85408 0.76811 1.13487 1.22615 0.74087 0.86858 0.88772 0.90070 0.89848 0.89935 0.89594 0.88699 0.86918 0.88485 0.88198 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.63 8.01 71.24 0.57 1.20 16 2 C -0.20 0.61 6.01 24.59 0.15 0.76 16 3 C -0.07 0.02 4.50 -20.92 -0.09 -0.08 16 4 C -0.09 -0.22 2.61 71.24 0.19 -0.04 16 5 O -0.53 -0.83 12.84 -148.98 -1.91 -2.74 16 6 Si 0.70 1.21 30.61 68.60 2.10 3.31 16 7 C -0.69 0.62 5.65 21.22 0.12 0.74 16 8 S 2.71 2.50 5.27 -56.49 -0.30 2.20 16 9 O -0.96 -2.52 14.10 -128.00 -1.80 -4.33 16 10 O -0.98 -7.49 15.15 -128.00 -1.94 -9.43 16 11 N -1.11 5.06 4.75 -169.40 -0.81 4.25 16 12 C 0.14 -1.40 2.99 44.99 0.13 -1.26 16 13 H 0.11 -1.46 6.80 -2.39 -0.02 -1.48 16 14 C -0.13 1.25 5.64 30.59 0.17 1.43 16 15 C -0.12 0.66 5.15 30.59 0.16 0.82 16 16 C 0.02 -0.08 2.88 44.99 0.13 0.05 16 17 H 0.16 -1.45 8.09 -2.39 -0.02 -1.47 16 18 N -0.01 -0.07 3.82 -169.37 -0.65 -0.71 16 19 O -0.19 -1.80 19.21 18.89 0.36 -1.43 16 20 O -0.19 -1.80 18.50 18.88 0.35 -1.45 16 21 C -0.12 0.82 5.12 30.59 0.16 0.98 16 22 C -0.11 1.25 5.63 30.59 0.17 1.42 16 23 C -0.05 0.19 6.50 24.59 0.16 0.35 16 24 C -0.12 0.79 8.60 71.24 0.61 1.40 16 25 S 0.20 -1.00 23.31 -56.49 -1.32 -2.32 16 26 H 0.09 -0.59 6.96 -2.39 -0.02 -0.61 16 27 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.07 -0.52 3.88 -2.38 -0.01 -0.53 16 29 H 0.13 0.63 4.52 -2.39 -0.01 0.62 16 30 H 0.38 -1.69 6.18 -74.06 -0.46 -2.15 16 31 H -0.21 0.35 4.55 99.48 0.45 0.81 16 32 H -0.30 -2.92 7.11 99.48 0.71 -2.21 16 33 H 0.42 -1.94 6.78 -96.75 -0.66 -2.59 16 34 H 0.11 -1.66 8.14 -2.39 -0.02 -1.68 16 35 H 0.09 -0.71 7.78 -2.39 -0.02 -0.73 16 36 H 0.08 -0.20 7.29 -2.39 -0.02 -0.22 16 37 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.08 -0.35 6.40 -2.38 -0.02 -0.36 16 39 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.09 -1.00 8.14 -2.38 -0.02 -1.02 16 41 H 0.11 -1.77 8.14 -2.39 -0.02 -1.79 16 42 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.10 -0.44 7.33 -2.38 -0.02 -0.45 16 44 H 0.11 -1.01 6.60 -2.39 -0.02 -1.03 16 Total: 0.00 -21.13 364.10 -3.53 -24.66 By element: Atomic # 1 Polarization: -19.53 SS G_CDS: -0.25 Total: -19.77 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 2.63 Total: 7.76 kcal Atomic # 7 Polarization: 4.99 SS G_CDS: -1.45 Total: 3.54 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -4.94 Total: -19.38 kcal Atomic # 14 Polarization: 1.21 SS G_CDS: 2.10 Total: 3.31 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.61 Total: -0.12 kcal Total: -21.13 -3.53 -24.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_15065288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.391 kcal (2) G-P(sol) polarization free energy of solvation -21.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds