Wall clock time and date at job start Mon Mar 8 2021 12:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47388 * 2 1 4 4 C 1.50701 * 109.47310 * 120.00003 * 2 1 3 5 5 C 1.38216 * 119.99649 * 75.64591 * 4 2 1 6 6 S 1.76195 * 120.00252 * 0.02562 * 5 4 2 7 7 O 1.42099 * 106.40244 * 310.10177 * 6 5 4 8 8 O 1.42097 * 106.40333 * 177.18587 * 6 5 4 9 9 N 1.65597 * 107.22347 * 63.64180 * 6 5 4 10 10 C 1.46507 * 119.99496 * 64.60744 * 9 6 5 11 11 H 1.08998 * 109.47208 * 335.93426 * 10 9 6 12 12 C 1.53002 * 109.46817 * 95.93483 * 10 9 6 13 13 C 1.53004 * 109.47435 * 59.99430 * 12 10 9 14 14 C 1.52997 * 109.46709 * 60.00122 * 13 12 10 15 15 H 1.09004 * 109.47228 * 60.00063 * 14 13 12 16 16 N 1.46501 * 109.46883 * 180.02562 * 14 13 12 17 17 O 1.21796 * 120.00281 * 59.99855 * 16 14 13 18 18 O 1.21799 * 119.99738 * 239.99768 * 16 14 13 19 19 C 1.53001 * 109.47398 * 299.99915 * 14 13 12 20 20 C 1.52999 * 109.47256 * 60.00013 * 19 14 13 21 21 C 1.38266 * 119.99558 * 179.72657 * 5 4 2 22 22 C 1.38205 * 119.99958 * 0.27878 * 21 5 4 23 23 C 1.38257 * 120.00327 * 359.97438 * 22 21 5 24 24 C 1.38213 * 119.99738 * 359.97438 * 23 22 21 25 25 H 0.96697 * 113.99779 * 305.22654 * 1 2 3 26 26 H 1.09006 * 109.46984 * 239.99669 * 2 1 3 27 27 H 1.48506 * 110.00059 * 178.68317 * 3 2 1 28 28 H 1.48505 * 109.99961 * 299.99769 * 3 2 1 29 29 H 0.96996 * 120.00587 * 244.61384 * 9 6 5 30 30 H 1.08995 * 109.47143 * 179.97438 * 12 10 9 31 31 H 1.09002 * 109.46919 * 299.99477 * 12 10 9 32 32 H 1.08998 * 109.47149 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.47156 * 300.00237 * 13 12 10 34 34 H 1.09004 * 109.47051 * 300.00256 * 19 14 13 35 35 H 1.08995 * 109.47480 * 180.02562 * 19 14 13 36 36 H 1.08996 * 109.47570 * 179.97438 * 20 19 14 37 37 H 1.09004 * 109.46892 * 60.00145 * 20 19 14 38 38 H 1.07997 * 119.99381 * 180.25455 * 21 5 4 39 39 H 1.08006 * 119.99922 * 179.97438 * 22 21 5 40 40 H 1.07997 * 120.00439 * 179.97438 * 23 22 21 41 41 H 1.08008 * 119.99636 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8819 -2.0899 1.3005 6 16 1.2322 -3.0179 -0.0490 7 8 -0.0190 -2.4288 -0.3756 8 8 1.3790 -4.3879 0.2984 9 7 2.2256 -2.7558 -1.3477 10 6 3.6174 -3.2116 -1.3090 11 1 3.9433 -3.2964 -0.2723 12 6 3.7261 -4.5768 -1.9912 13 6 3.2686 -4.4577 -3.4464 14 6 4.1560 -3.4494 -4.1790 15 1 5.1916 -3.7886 -4.1502 16 7 3.7176 -3.3349 -5.5722 17 8 2.5842 -2.9682 -5.8258 18 8 4.4866 -3.6065 -6.4768 19 6 4.0474 -2.0842 -3.4969 20 6 4.5048 -2.2032 -2.0417 21 6 2.3481 -2.7420 2.4271 22 6 2.8581 -2.0141 3.4855 23 6 2.9027 -0.6339 3.4175 24 6 2.4377 0.0179 2.2909 25 1 -0.3933 0.5095 0.7216 26 1 1.7923 -0.5139 -0.8900 27 1 3.5347 1.7702 0.0321 28 1 1.5616 2.4679 -1.2086 29 1 1.8861 -2.3004 -2.1340 30 1 4.7616 -4.9157 -1.9628 31 1 3.0939 -5.2951 -1.4692 32 1 3.3456 -5.4304 -3.9322 33 1 2.2332 -4.1186 -3.4751 34 1 3.0118 -1.7450 -3.5256 35 1 4.6792 -1.3658 -4.0190 36 1 4.4278 -1.2306 -1.5559 37 1 5.5403 -2.5424 -2.0130 38 1 2.3132 -3.8201 2.4801 39 1 3.2218 -2.5234 4.3657 40 1 3.3008 -0.0650 4.2447 41 1 2.4722 1.0961 2.2380 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16623258_2726874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:52 Heat of formation + Delta-G solvation = -73.848162 kcal Electronic energy + Delta-G solvation = -29997.446490 eV Core-core repulsion = 25781.505381 eV Total energy + Delta-G solvation = -4215.941108 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.101 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -43.33909 -40.87548 -40.43790 -38.38974 -37.49137 -37.37605 -36.79177 -35.37094 -32.98286 -32.60460 -32.51578 -31.46835 -27.32106 -27.03008 -24.60726 -24.45504 -23.50463 -22.94061 -21.67994 -20.62699 -19.78381 -19.39378 -19.26621 -18.63140 -18.25120 -18.14226 -17.50703 -17.07104 -16.68830 -16.44842 -16.05870 -15.96970 -15.73227 -15.53311 -15.15082 -14.85112 -14.43508 -14.42226 -14.29521 -14.06018 -13.89780 -13.64358 -13.09007 -13.02351 -12.96056 -12.89785 -12.84361 -12.62216 -12.44874 -12.37361 -12.36042 -12.27244 -12.15347 -11.96796 -11.71624 -11.69640 -10.86049 -10.64124 -10.61899 -10.23889 -5.26702 -0.74678 -0.42830 -0.40604 -0.05504 0.65479 0.98678 1.41670 1.74992 1.77007 2.22633 2.64109 2.74172 2.82916 3.10823 3.14602 3.25558 3.31596 3.36572 3.44047 3.56108 3.62420 3.65729 3.68805 3.79014 3.83210 3.96777 4.05495 4.11152 4.15753 4.19974 4.35455 4.37938 4.42019 4.52459 4.53952 4.58340 4.77124 4.79235 4.86197 4.92837 5.08123 5.35252 5.52907 5.63695 6.49431 6.62330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.499 6.499 2 C -0.106 4.106 3 Si 0.691 3.309 4 C -0.016 4.016 5 C -0.658 4.658 6 S 2.682 3.318 7 O -0.917 6.917 8 O -0.957 6.957 9 N -1.118 6.118 10 C 0.149 3.851 11 H 0.099 0.901 12 C -0.132 4.132 13 C -0.125 4.125 14 C 0.017 3.983 15 H 0.137 0.863 16 N -0.019 5.019 17 O -0.156 6.156 18 O -0.163 6.163 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.023 4.023 22 C -0.134 4.134 23 C -0.056 4.056 24 C -0.136 4.136 25 H 0.375 0.625 26 H 0.112 0.888 27 H -0.253 1.253 28 H -0.245 1.245 29 H 0.419 0.581 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 3.511 7.506 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.303 6.303 2 C -0.218 4.218 3 Si 0.590 3.410 4 C -0.018 4.018 5 C -0.744 4.744 6 S 2.771 3.229 7 O -0.907 6.907 8 O -0.947 6.947 9 N -0.879 5.879 10 C 0.042 3.958 11 H 0.117 0.883 12 C -0.172 4.172 13 C -0.163 4.163 14 C -0.081 4.081 15 H 0.155 0.845 16 N 0.504 4.496 17 O -0.377 6.377 18 O -0.381 6.381 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.042 4.042 22 C -0.153 4.153 23 C -0.075 4.075 24 C -0.154 4.154 25 H 0.221 0.779 26 H 0.129 0.871 27 H -0.177 1.177 28 H -0.169 1.169 29 H 0.256 0.744 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.225 3.064 7.464 9.612 hybrid contribution 0.497 0.104 -0.323 0.601 sum 5.722 3.167 7.141 9.683 Atomic orbital electron populations 1.86883 1.14022 1.75889 1.53502 1.25441 0.88103 1.11699 0.96508 0.94540 0.81119 0.77287 0.88022 1.20042 0.93404 0.92243 0.96087 1.30833 1.18483 1.06242 1.18844 1.02494 0.73454 0.73914 0.73045 1.93755 1.36932 1.77691 1.82293 1.93591 1.86135 1.31336 1.83657 1.55987 1.23356 1.75295 1.33277 1.20850 0.80524 0.93480 1.00953 0.88291 1.22065 1.03769 0.97825 0.93527 1.21879 1.00159 0.98006 0.96255 1.24376 1.03848 1.01586 0.78251 0.84476 1.44900 1.00747 0.98069 1.05853 1.94565 1.05144 1.47195 1.90797 1.94590 1.50660 1.51562 1.41337 1.21894 1.04964 0.92964 0.96772 1.21838 1.00299 1.00862 0.93046 1.21101 0.91099 1.00830 0.91145 1.21415 1.00331 0.94359 0.99190 1.21514 0.94038 0.94835 0.97065 1.21123 1.00780 0.99575 0.93962 0.77883 0.87086 1.17705 1.16928 0.74413 0.89534 0.88100 0.89582 0.88753 0.89007 0.89457 0.89328 0.89073 0.83653 0.84532 0.84499 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 -0.26 10.59 -57.75 -0.61 -0.87 16 2 C -0.11 0.13 1.88 36.01 0.07 0.20 16 3 Si 0.69 -1.84 29.85 -169.99 -5.07 -6.92 16 4 C -0.02 0.02 5.27 -104.62 -0.55 -0.53 16 5 C -0.66 0.16 5.72 -39.58 -0.23 -0.07 16 6 S 2.68 2.71 4.89 -107.50 -0.53 2.19 16 7 O -0.92 -4.04 15.02 -66.42 -1.00 -5.04 16 8 O -0.96 -3.00 16.34 -57.18 -0.93 -3.93 16 9 N -1.12 2.37 3.46 -4.89 -0.02 2.35 16 10 C 0.15 -0.58 2.99 -67.92 -0.20 -0.78 16 11 H 0.10 -0.49 7.83 -51.93 -0.41 -0.89 16 12 C -0.13 0.46 5.64 -26.73 -0.15 0.31 16 13 C -0.12 0.28 5.15 -26.73 -0.14 0.14 16 14 C 0.02 -0.03 2.88 -67.93 -0.20 -0.23 16 15 H 0.14 -0.50 8.09 -51.93 -0.42 -0.92 16 16 N -0.02 -0.04 3.82 -4.89 -0.02 -0.06 16 17 O -0.16 -0.62 18.50 -29.46 -0.55 -1.17 16 18 O -0.16 -0.69 19.21 -29.46 -0.57 -1.26 16 19 C -0.13 0.43 5.12 -26.73 -0.14 0.29 16 20 C -0.12 0.61 5.63 -26.73 -0.15 0.46 16 21 C -0.02 0.02 9.55 -39.58 -0.38 -0.36 16 22 C -0.13 0.32 10.05 -39.59 -0.40 -0.08 16 23 C -0.06 0.18 10.05 -39.58 -0.40 -0.22 16 24 C -0.14 0.38 8.66 -39.59 -0.34 0.04 16 25 H 0.37 -1.31 8.60 45.56 0.39 -0.92 16 26 H 0.11 -0.20 5.79 -51.93 -0.30 -0.50 16 27 H -0.25 0.27 7.11 56.52 0.40 0.67 16 28 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 29 H 0.42 -1.19 6.46 -34.47 -0.22 -1.41 16 30 H 0.09 -0.45 8.14 -51.93 -0.42 -0.88 16 31 H 0.10 -0.21 7.74 -51.93 -0.40 -0.62 16 32 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 33 H 0.09 -0.13 7.31 -51.93 -0.38 -0.51 16 34 H 0.09 -0.28 6.39 -51.93 -0.33 -0.61 16 35 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 36 H 0.09 -0.48 8.14 -51.93 -0.42 -0.90 16 37 H 0.09 -0.58 8.14 -51.93 -0.42 -1.00 16 38 H 0.15 -0.23 7.34 -52.49 -0.39 -0.61 16 39 H 0.14 -0.60 8.06 -52.48 -0.42 -1.02 16 40 H 0.14 -0.75 8.06 -52.49 -0.42 -1.17 16 41 H 0.14 -0.73 5.16 -52.48 -0.27 -1.00 16 LS Contribution 342.00 15.07 5.15 5.15 Total: 0.00 -11.49 342.00 -12.22 -23.72 By element: Atomic # 1 Polarization: -8.45 SS G_CDS: -4.88 Total: -13.34 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.20 Total: -0.83 kcal Atomic # 7 Polarization: 2.33 SS G_CDS: -0.04 Total: 2.30 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -3.65 Total: -12.26 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: -5.07 Total: -6.92 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -0.53 Total: 2.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -11.49 -12.22 -23.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_2726874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.133 kcal (2) G-P(sol) polarization free energy of solvation -11.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds