Wall clock time and date at job start Mon Mar 8 2021 12:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47388 * 2 1 4 4 C 1.50701 * 109.47310 * 120.00003 * 2 1 3 5 5 C 1.38216 * 119.99649 * 75.64591 * 4 2 1 6 6 S 1.76195 * 120.00252 * 0.02562 * 5 4 2 7 7 O 1.42099 * 106.40244 * 310.10177 * 6 5 4 8 8 O 1.42097 * 106.40333 * 177.18587 * 6 5 4 9 9 N 1.65597 * 107.22347 * 63.64180 * 6 5 4 10 10 C 1.46507 * 119.99496 * 64.60744 * 9 6 5 11 11 H 1.08998 * 109.47208 * 335.93426 * 10 9 6 12 12 C 1.53002 * 109.46817 * 95.93483 * 10 9 6 13 13 C 1.53004 * 109.47435 * 59.99430 * 12 10 9 14 14 C 1.52997 * 109.46709 * 60.00122 * 13 12 10 15 15 H 1.09004 * 109.47228 * 60.00063 * 14 13 12 16 16 N 1.46501 * 109.46883 * 180.02562 * 14 13 12 17 17 O 1.21796 * 120.00281 * 59.99855 * 16 14 13 18 18 O 1.21799 * 119.99738 * 239.99768 * 16 14 13 19 19 C 1.53001 * 109.47398 * 299.99915 * 14 13 12 20 20 C 1.52999 * 109.47256 * 60.00013 * 19 14 13 21 21 C 1.38266 * 119.99558 * 179.72657 * 5 4 2 22 22 C 1.38205 * 119.99958 * 0.27878 * 21 5 4 23 23 C 1.38257 * 120.00327 * 359.97438 * 22 21 5 24 24 C 1.38213 * 119.99738 * 359.97438 * 23 22 21 25 25 H 0.96697 * 113.99779 * 305.22654 * 1 2 3 26 26 H 1.09006 * 109.46984 * 239.99669 * 2 1 3 27 27 H 1.48506 * 110.00059 * 178.68317 * 3 2 1 28 28 H 1.48505 * 109.99961 * 299.99769 * 3 2 1 29 29 H 0.96996 * 120.00587 * 244.61384 * 9 6 5 30 30 H 1.08995 * 109.47143 * 179.97438 * 12 10 9 31 31 H 1.09002 * 109.46919 * 299.99477 * 12 10 9 32 32 H 1.08998 * 109.47149 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.47156 * 300.00237 * 13 12 10 34 34 H 1.09004 * 109.47051 * 300.00256 * 19 14 13 35 35 H 1.08995 * 109.47480 * 180.02562 * 19 14 13 36 36 H 1.08996 * 109.47570 * 179.97438 * 20 19 14 37 37 H 1.09004 * 109.46892 * 60.00145 * 20 19 14 38 38 H 1.07997 * 119.99381 * 180.25455 * 21 5 4 39 39 H 1.08006 * 119.99922 * 179.97438 * 22 21 5 40 40 H 1.07997 * 120.00439 * 179.97438 * 23 22 21 41 41 H 1.08008 * 119.99636 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8819 -2.0899 1.3005 6 16 1.2322 -3.0179 -0.0490 7 8 -0.0190 -2.4288 -0.3756 8 8 1.3790 -4.3879 0.2984 9 7 2.2256 -2.7558 -1.3477 10 6 3.6174 -3.2116 -1.3090 11 1 3.9433 -3.2964 -0.2723 12 6 3.7261 -4.5768 -1.9912 13 6 3.2686 -4.4577 -3.4464 14 6 4.1560 -3.4494 -4.1790 15 1 5.1916 -3.7886 -4.1502 16 7 3.7176 -3.3349 -5.5722 17 8 2.5842 -2.9682 -5.8258 18 8 4.4866 -3.6065 -6.4768 19 6 4.0474 -2.0842 -3.4969 20 6 4.5048 -2.2032 -2.0417 21 6 2.3481 -2.7420 2.4271 22 6 2.8581 -2.0141 3.4855 23 6 2.9027 -0.6339 3.4175 24 6 2.4377 0.0179 2.2909 25 1 -0.3933 0.5095 0.7216 26 1 1.7923 -0.5139 -0.8900 27 1 3.5347 1.7702 0.0321 28 1 1.5616 2.4679 -1.2086 29 1 1.8861 -2.3004 -2.1340 30 1 4.7616 -4.9157 -1.9628 31 1 3.0939 -5.2951 -1.4692 32 1 3.3456 -5.4304 -3.9322 33 1 2.2332 -4.1186 -3.4751 34 1 3.0118 -1.7450 -3.5256 35 1 4.6792 -1.3658 -4.0190 36 1 4.4278 -1.2306 -1.5559 37 1 5.5403 -2.5424 -2.0130 38 1 2.3132 -3.8201 2.4801 39 1 3.2218 -2.5234 4.3657 40 1 3.3008 -0.0650 4.2447 41 1 2.4722 1.0961 2.2380 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16623258_2726874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:37:51 Heat of formation + Delta-G solvation = -76.077841 kcal Electronic energy + Delta-G solvation = -29997.543176 eV Core-core repulsion = 25781.505381 eV Total energy + Delta-G solvation = -4216.037795 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.101 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.44999 -40.68527 -40.25978 -38.47977 -37.59803 -37.44643 -36.95908 -35.26041 -32.81253 -32.39448 -32.27562 -31.34232 -27.29350 -26.90706 -24.42109 -24.20845 -23.45659 -22.76493 -21.52871 -20.56092 -19.89189 -19.39140 -19.17107 -18.62284 -18.33979 -18.05070 -17.40038 -16.89674 -16.56702 -16.25213 -15.97814 -15.80061 -15.52486 -15.44810 -14.98431 -14.63437 -14.31193 -14.22196 -14.18277 -13.88885 -13.65566 -13.47865 -13.20958 -13.09360 -12.98861 -12.78424 -12.69576 -12.68450 -12.50811 -12.26062 -12.24699 -12.22682 -12.19954 -11.98166 -11.64951 -11.56040 -10.68068 -10.49547 -10.44825 -10.04399 -5.06408 -0.73044 -0.71167 -0.27667 0.15110 0.63794 1.16699 1.59309 1.86016 1.91498 2.41068 2.65743 2.92884 2.98475 3.26527 3.37665 3.43235 3.50140 3.54095 3.68780 3.79986 3.83593 3.90357 3.96780 4.04669 4.10694 4.17114 4.30047 4.34995 4.38859 4.41409 4.59044 4.61352 4.66228 4.80915 4.82521 4.85989 5.00401 5.03881 5.10761 5.17306 5.18904 5.31907 5.77204 5.80696 6.32029 6.76039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.126 4.126 3 Si 0.782 3.218 4 C -0.024 4.024 5 C -0.665 4.665 6 S 2.690 3.310 7 O -0.961 6.961 8 O -0.988 6.988 9 N -1.112 6.112 10 C 0.142 3.858 11 H 0.114 0.886 12 C -0.129 4.129 13 C -0.124 4.124 14 C 0.020 3.980 15 H 0.162 0.838 16 N -0.013 5.013 17 O -0.187 6.187 18 O -0.186 6.186 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.038 4.038 22 C -0.137 4.137 23 C -0.053 4.053 24 C -0.137 4.137 25 H 0.388 0.612 26 H 0.109 0.891 27 H -0.264 1.264 28 H -0.296 1.296 29 H 0.421 0.579 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.215 4.632 9.557 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.235 4.235 3 Si 0.685 3.315 4 C -0.026 4.026 5 C -0.754 4.754 6 S 2.782 3.218 7 O -0.951 6.951 8 O -0.978 6.978 9 N -0.875 5.875 10 C 0.036 3.964 11 H 0.132 0.868 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.077 4.077 15 H 0.179 0.821 16 N 0.506 4.494 17 O -0.405 6.405 18 O -0.404 6.404 19 C -0.166 4.166 20 C -0.152 4.152 21 C -0.058 4.058 22 C -0.156 4.156 23 C -0.071 4.071 24 C -0.155 4.155 25 H 0.237 0.763 26 H 0.126 0.874 27 H -0.189 1.189 28 H -0.224 1.224 29 H 0.259 0.741 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.174 0.826 40 H 0.185 0.815 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.330 4.147 9.509 12.702 hybrid contribution -0.150 -0.248 -0.935 0.979 sum 7.180 3.898 8.574 11.844 Atomic orbital electron populations 1.86846 1.15269 1.76585 1.54550 1.25808 0.87419 1.13485 0.96794 0.93476 0.78656 0.73796 0.85600 1.20100 0.93942 0.91866 0.96675 1.30494 1.19853 1.06665 1.18435 1.01820 0.73124 0.73287 0.73560 1.93694 1.39878 1.78227 1.83263 1.93544 1.86598 1.33306 1.84328 1.55753 1.23979 1.75294 1.32424 1.21118 0.79557 0.93621 1.02104 0.86806 1.22078 1.04946 0.97819 0.92014 1.21891 0.99484 0.97651 0.97230 1.24684 1.04859 1.02593 0.75525 0.82091 1.45517 1.00077 0.96737 1.07094 1.94558 1.06090 1.48345 1.91496 1.94569 1.50638 1.52201 1.43018 1.21979 1.04783 0.91962 0.97894 1.21862 1.01075 1.01041 0.91200 1.21225 0.91906 1.01032 0.91621 1.21715 0.99662 0.94993 0.99197 1.21921 0.92855 0.94688 0.97591 1.21460 0.99785 1.00909 0.93345 0.76309 0.87378 1.18916 1.22380 0.74104 0.86878 0.89645 0.89956 0.90237 0.89867 0.89019 0.88336 0.86560 0.83934 0.82580 0.81516 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.23 10.59 -127.45 -1.35 -2.58 16 2 C -0.13 0.26 1.88 71.24 0.13 0.39 16 3 Si 0.78 -4.69 29.85 68.60 2.05 -2.64 16 4 C -0.02 0.07 5.27 -19.87 -0.10 -0.04 16 5 C -0.67 0.02 5.72 22.27 0.13 0.14 16 6 S 2.69 10.52 4.89 -56.49 -0.28 10.24 16 7 O -0.96 -11.10 15.02 -119.16 -1.79 -12.89 16 8 O -0.99 -8.35 16.34 -128.00 -2.09 -10.44 16 9 N -1.11 3.37 3.46 -169.37 -0.59 2.78 16 10 C 0.14 -1.16 2.99 44.99 0.13 -1.02 16 11 H 0.11 -1.22 7.83 -2.39 -0.02 -1.24 16 12 C -0.13 0.92 5.64 30.60 0.17 1.09 16 13 C -0.12 0.45 5.15 30.59 0.16 0.61 16 14 C 0.02 -0.08 2.88 44.99 0.13 0.05 16 15 H 0.16 -1.40 8.09 -2.38 -0.02 -1.42 16 16 N -0.01 -0.07 3.82 -169.38 -0.65 -0.72 16 17 O -0.19 -1.88 18.50 18.89 0.35 -1.53 16 18 O -0.19 -1.79 19.21 18.89 0.36 -1.43 16 19 C -0.13 0.90 5.12 30.59 0.16 1.05 16 20 C -0.11 1.31 5.63 30.59 0.17 1.48 16 21 C -0.04 0.07 9.55 22.27 0.21 0.29 16 22 C -0.14 0.88 10.05 22.27 0.22 1.10 16 23 C -0.05 0.47 10.05 22.27 0.22 0.69 16 24 C -0.14 1.04 8.66 22.27 0.19 1.24 16 25 H 0.39 -2.37 8.60 -74.06 -0.64 -3.00 16 26 H 0.11 -0.27 5.79 -2.38 -0.01 -0.29 16 27 H -0.26 1.07 7.11 99.48 0.71 1.78 16 28 H -0.30 -0.70 7.11 99.48 0.71 0.01 16 29 H 0.42 -1.60 6.46 -96.75 -0.62 -2.22 16 30 H 0.11 -1.39 8.14 -2.39 -0.02 -1.41 16 31 H 0.08 -0.28 7.74 -2.39 -0.02 -0.29 16 32 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.08 -0.04 7.31 -2.39 -0.02 -0.06 16 34 H 0.08 -0.42 6.39 -2.38 -0.02 -0.44 16 35 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 37 H 0.12 -1.85 8.14 -2.38 -0.02 -1.87 16 38 H 0.14 -0.31 7.34 -2.91 -0.02 -0.34 16 39 H 0.16 -1.69 8.06 -2.91 -0.02 -1.71 16 40 H 0.17 -2.49 8.06 -2.91 -0.02 -2.51 16 41 H 0.16 -2.22 5.16 -2.91 -0.01 -2.24 16 Total: 0.00 -29.41 342.00 -2.18 -31.59 By element: Atomic # 1 Polarization: -19.34 SS G_CDS: -0.13 Total: -19.47 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 1.93 Total: 7.08 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -1.23 Total: 2.07 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -4.52 Total: -28.87 kcal Atomic # 14 Polarization: -4.69 SS G_CDS: 2.05 Total: -2.64 kcal Atomic # 16 Polarization: 10.52 SS G_CDS: -0.28 Total: 10.24 kcal Total: -29.41 -2.18 -31.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16623258_2726874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.488 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds