Wall clock time and date at job start Mon Mar 8 2021 13:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47248 * 180.02562 * 5 3 2 7 7 H 1.08992 * 112.84716 * 314.66719 * 6 5 3 8 8 C 1.53788 * 113.61402 * 85.86134 * 6 5 3 9 9 C 1.53957 * 87.01678 * 139.95226 * 8 6 5 10 10 H 1.09008 * 113.74123 * 220.05559 * 9 8 6 11 11 N 1.46498 * 113.53773 * 89.19168 * 9 8 6 12 12 S 1.65605 * 120.00248 * 117.49909 * 11 9 8 13 13 O 1.42098 * 106.40224 * 178.53989 * 12 11 9 14 14 O 1.42097 * 106.40097 * 311.46063 * 12 11 9 15 15 C 1.76205 * 107.21372 * 65.00219 * 12 11 9 16 16 C 1.38233 * 119.99940 * 269.72370 * 15 12 11 17 17 C 1.38233 * 119.99844 * 179.79071 * 16 15 12 18 18 C 1.38227 * 119.99931 * 0.46465 * 17 16 15 19 19 C 1.50700 * 120.00037 * 179.78964 * 18 17 16 20 20 O 1.42897 * 109.47360 * 244.97934 * 19 18 17 21 21 Si 1.86298 * 109.47278 * 4.97911 * 19 18 17 22 22 C 1.38235 * 120.00167 * 359.76907 * 18 17 16 23 23 C 1.38234 * 120.00112 * 0.02562 * 22 18 17 24 24 C 1.53778 * 87.11435 * 334.63598 * 9 8 6 25 25 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 26 26 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 27 27 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 29 29 H 1.09001 * 109.47517 * 59.99934 * 5 3 2 30 30 H 1.08999 * 113.61215 * 254.52953 * 8 6 5 31 31 H 1.08998 * 113.61100 * 25.43472 * 8 6 5 32 32 H 0.97001 * 119.99801 * 297.50474 * 11 9 8 33 33 H 1.08004 * 120.00010 * 0.02562 * 16 15 12 34 34 H 1.08001 * 119.99697 * 180.25101 * 17 16 15 35 35 H 1.09006 * 109.47450 * 124.98133 * 19 18 17 36 36 H 0.96701 * 114.00587 * 179.97438 * 20 19 18 37 37 H 1.48505 * 109.99674 * 300.00210 * 21 19 18 38 38 H 1.48497 * 110.00076 * 61.31608 * 21 19 18 39 39 H 1.08007 * 120.00229 * 180.02562 * 22 18 17 40 40 H 1.08001 * 119.99942 * 179.97438 * 23 22 18 41 41 H 1.08997 * 113.61790 * 270.81493 * 24 9 8 42 42 H 1.08999 * 113.61320 * 139.90590 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.4427 3.3486 -0.7135 8 6 4.0778 3.3608 1.4060 9 6 5.3582 4.0735 0.9339 10 1 6.1464 4.1040 1.6862 11 7 5.1080 5.3795 0.3190 12 16 5.7262 6.7519 1.0094 13 8 5.3423 7.8317 0.1691 14 8 5.3998 6.6881 2.3909 15 6 7.4818 6.6418 0.9072 16 6 8.1985 6.0559 1.9338 17 6 9.5754 5.9656 1.8516 18 6 10.2364 6.4697 0.7473 19 6 11.7379 6.3755 0.6598 20 8 12.2996 7.6893 0.6800 21 14 12.3846 5.4015 2.1103 22 6 9.5201 7.0599 -0.2772 23 6 8.1428 7.1464 -0.1970 24 6 5.5235 2.9341 -0.0856 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9565 0.7806 0.8892 29 1 3.9557 0.7810 -0.8908 30 1 3.2558 4.0406 1.6299 31 1 4.2510 2.6297 2.1957 32 1 4.5801 5.4402 -0.4926 33 1 7.6823 5.6654 2.7984 34 1 10.1350 5.5043 2.6519 35 1 12.0173 5.8752 -0.2674 36 1 13.2651 7.7053 0.6271 37 1 12.0103 6.0734 3.3806 38 1 11.8327 4.0231 2.0831 39 1 10.0366 7.4534 -1.1403 40 1 7.5833 7.6079 -0.9973 41 1 6.0926 2.0863 0.2957 42 1 5.8668 3.2701 -1.0640 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16627172_13421422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:34 Heat of formation + Delta-G solvation = -130.446076 kcal Electronic energy + Delta-G solvation = -27559.756595 eV Core-core repulsion = 23406.787128 eV Total energy + Delta-G solvation = -4152.969467 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.63194 -40.73004 -40.34410 -38.22691 -37.79158 -37.43110 -36.85442 -34.52770 -33.23785 -32.31576 -31.32471 -28.43374 -27.30818 -26.82860 -24.78096 -24.18070 -22.89056 -21.95135 -21.06771 -20.33918 -19.20283 -18.62895 -18.58230 -18.49910 -17.64781 -17.48994 -17.35140 -17.05466 -16.79660 -16.06143 -15.95947 -15.60937 -15.48706 -15.28229 -14.89324 -14.75835 -14.38568 -14.24571 -14.08903 -14.00919 -13.94243 -13.49097 -13.24429 -13.11782 -13.06656 -13.01266 -12.93481 -12.82768 -12.43498 -12.15146 -12.11318 -11.90640 -11.79133 -11.74018 -11.37456 -11.37126 -10.67570 -10.60598 -10.36001 -10.23005 -5.13201 -0.74759 -0.40951 0.09259 1.07891 1.23091 1.47794 1.72394 1.80011 1.82513 2.25109 2.70901 3.12121 3.20471 3.29542 3.33995 3.53691 3.57437 3.62502 3.65276 3.71114 3.82856 3.94249 4.03130 4.12332 4.16275 4.20264 4.23899 4.27743 4.31432 4.38812 4.48625 4.56485 4.58610 4.63595 4.70673 4.81084 4.83799 4.89027 4.97623 5.03243 5.15591 5.31447 5.43568 5.59039 5.83033 6.41962 6.76198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.105 4.105 6 C -0.103 4.103 7 H 0.104 0.896 8 C -0.146 4.146 9 C 0.127 3.873 10 H 0.102 0.898 11 N -1.097 6.097 12 S 2.696 3.304 13 O -0.952 6.952 14 O -0.949 6.949 15 C -0.674 4.674 16 C -0.015 4.015 17 C -0.144 4.144 18 C -0.018 4.018 19 C -0.082 4.082 20 O -0.543 6.543 21 Si 0.687 3.313 22 C -0.110 4.110 23 C -0.015 4.015 24 C -0.140 4.140 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.421 0.579 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.386 0.614 37 H -0.248 1.248 38 H -0.252 1.252 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 -6.896 -2.487 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.391 6.391 5 C -0.143 4.143 6 C -0.121 4.121 7 H 0.122 0.878 8 C -0.185 4.185 9 C 0.019 3.981 10 H 0.120 0.880 11 N -0.855 5.855 12 S 2.785 3.215 13 O -0.943 6.943 14 O -0.939 6.939 15 C -0.761 4.761 16 C -0.034 4.034 17 C -0.163 4.163 18 C -0.018 4.018 19 C -0.193 4.193 20 O -0.349 6.349 21 Si 0.587 3.413 22 C -0.129 4.129 23 C -0.034 4.034 24 C -0.179 4.179 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.257 0.743 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.234 0.766 37 H -0.172 1.172 38 H -0.176 1.176 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.117 0.883 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.896 -6.197 -1.179 7.986 hybrid contribution -0.165 -0.139 -0.945 0.970 sum 4.731 -6.337 -2.124 8.188 Atomic orbital electron populations 1.23297 0.75960 1.03916 1.02699 1.86506 1.23777 1.33574 1.84085 1.23841 0.92323 0.81387 0.72391 1.90694 1.67248 1.36305 1.44803 1.21451 0.87568 0.99125 1.06124 1.22493 0.96299 0.93936 0.99389 0.87801 1.23557 0.98363 1.00110 0.96503 1.21617 0.98535 0.82250 0.95731 0.87991 1.55361 1.67589 1.20818 1.41753 1.01950 0.73393 0.72311 0.73858 1.93623 1.81745 1.50440 1.68455 1.93621 1.82205 1.85842 1.32198 1.31022 1.27128 1.14504 1.03422 1.20857 0.93942 0.92584 0.96060 1.21035 0.95069 1.02482 0.97669 1.19724 0.93957 0.94473 0.93691 1.24823 0.92299 0.91518 1.10647 1.86494 1.25934 1.25074 1.97439 0.95082 0.90793 0.78150 0.77267 1.21185 0.93689 0.98759 0.99291 1.21013 0.94914 0.92262 0.95182 1.23434 0.95748 0.98385 1.00374 0.91800 0.91761 0.87935 0.87285 0.87286 0.89845 0.88677 0.74313 0.83730 0.85396 0.90099 0.76561 1.17229 1.17649 0.84326 0.83645 0.88256 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.38 10.57 -39.26 -0.41 -0.80 16 3 C 0.46 0.53 7.96 36.00 0.29 0.81 16 4 O -0.50 -2.12 15.54 -18.75 -0.29 -2.41 16 5 C -0.11 0.26 5.64 -27.88 -0.16 0.11 16 6 C -0.10 0.21 2.93 -89.80 -0.26 -0.05 16 7 H 0.10 -0.09 7.70 -51.93 -0.40 -0.49 16 8 C -0.15 0.17 7.44 -25.82 -0.19 -0.02 16 9 C 0.13 -0.24 4.44 -67.03 -0.30 -0.54 16 10 H 0.10 -0.30 7.80 -51.92 -0.40 -0.70 16 11 N -1.10 1.06 5.73 -4.12 -0.02 1.03 16 12 S 2.70 5.42 5.68 -107.50 -0.61 4.81 16 13 O -0.95 -4.60 17.28 -57.17 -0.99 -5.59 16 14 O -0.95 -4.61 17.04 -57.17 -0.97 -5.59 16 15 C -0.67 -1.01 5.95 -39.58 -0.24 -1.24 16 16 C -0.02 -0.02 9.27 -39.59 -0.37 -0.39 16 17 C -0.14 -0.22 8.67 -39.59 -0.34 -0.56 16 18 C -0.02 -0.02 5.38 -104.63 -0.56 -0.59 16 19 C -0.08 0.10 2.79 36.01 0.10 0.20 16 20 O -0.54 0.37 12.81 -35.23 -0.45 -0.08 16 21 Si 0.69 -1.50 29.85 -169.99 -5.07 -6.57 16 22 C -0.11 -0.11 9.69 -39.58 -0.38 -0.50 16 23 C -0.01 -0.02 9.52 -39.58 -0.38 -0.39 16 24 C -0.14 0.51 7.43 -25.92 -0.19 0.31 16 25 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 26 H 0.06 -0.02 8.13 -51.93 -0.42 -0.45 16 27 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 28 H 0.11 -0.45 7.87 -51.92 -0.41 -0.86 16 29 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 30 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.09 -0.24 7.92 -51.93 -0.41 -0.65 16 32 H 0.42 -1.00 8.79 -34.47 -0.30 -1.30 16 33 H 0.15 -0.06 7.61 -52.48 -0.40 -0.46 16 34 H 0.13 0.07 4.87 -52.49 -0.26 -0.19 16 35 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 36 H 0.39 -2.23 8.74 45.56 0.40 -1.83 16 37 H -0.25 -0.28 7.05 56.52 0.40 0.12 16 38 H -0.25 0.04 7.11 56.52 0.40 0.44 16 39 H 0.14 -0.09 8.06 -52.48 -0.42 -0.51 16 40 H 0.15 -0.05 7.62 -52.49 -0.40 -0.45 16 41 H 0.10 -0.50 8.10 -51.93 -0.42 -0.92 16 42 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 LS Contribution 368.18 15.07 5.55 5.55 Total: 0.00 -12.72 368.18 -10.78 -23.50 By element: Atomic # 1 Polarization: -6.48 SS G_CDS: -5.58 Total: -12.05 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.92 Total: -1.80 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -0.02 Total: 1.03 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -3.12 Total: -14.47 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -5.07 Total: -6.57 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -0.61 Total: 4.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -12.72 -10.78 -23.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_13421422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.947 kcal (2) G-P(sol) polarization free energy of solvation -12.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds