Wall clock time and date at job start Mon Mar 8 2021 13:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47248 * 180.02562 * 5 3 2 7 7 H 1.08992 * 112.84716 * 314.66719 * 6 5 3 8 8 C 1.53788 * 113.61402 * 85.86134 * 6 5 3 9 9 C 1.53957 * 87.01678 * 139.95226 * 8 6 5 10 10 H 1.09008 * 113.74123 * 220.05559 * 9 8 6 11 11 N 1.46498 * 113.53773 * 89.19168 * 9 8 6 12 12 S 1.65605 * 120.00248 * 117.49909 * 11 9 8 13 13 O 1.42098 * 106.40224 * 178.53989 * 12 11 9 14 14 O 1.42097 * 106.40097 * 311.46063 * 12 11 9 15 15 C 1.76205 * 107.21372 * 65.00219 * 12 11 9 16 16 C 1.38233 * 119.99940 * 269.72370 * 15 12 11 17 17 C 1.38233 * 119.99844 * 179.79071 * 16 15 12 18 18 C 1.38227 * 119.99931 * 0.46465 * 17 16 15 19 19 C 1.50700 * 120.00037 * 179.78964 * 18 17 16 20 20 O 1.42897 * 109.47360 * 244.97934 * 19 18 17 21 21 Si 1.86298 * 109.47278 * 4.97911 * 19 18 17 22 22 C 1.38235 * 120.00167 * 359.76907 * 18 17 16 23 23 C 1.38234 * 120.00112 * 0.02562 * 22 18 17 24 24 C 1.53778 * 87.11435 * 334.63598 * 9 8 6 25 25 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 26 26 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 27 27 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 29 29 H 1.09001 * 109.47517 * 59.99934 * 5 3 2 30 30 H 1.08999 * 113.61215 * 254.52953 * 8 6 5 31 31 H 1.08998 * 113.61100 * 25.43472 * 8 6 5 32 32 H 0.97001 * 119.99801 * 297.50474 * 11 9 8 33 33 H 1.08004 * 120.00010 * 0.02562 * 16 15 12 34 34 H 1.08001 * 119.99697 * 180.25101 * 17 16 15 35 35 H 1.09006 * 109.47450 * 124.98133 * 19 18 17 36 36 H 0.96701 * 114.00587 * 179.97438 * 20 19 18 37 37 H 1.48505 * 109.99674 * 300.00210 * 21 19 18 38 38 H 1.48497 * 110.00076 * 61.31608 * 21 19 18 39 39 H 1.08007 * 120.00229 * 180.02562 * 22 18 17 40 40 H 1.08001 * 119.99942 * 179.97438 * 23 22 18 41 41 H 1.08997 * 113.61790 * 270.81493 * 24 9 8 42 42 H 1.08999 * 113.61320 * 139.90590 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.4427 3.3486 -0.7135 8 6 4.0778 3.3608 1.4060 9 6 5.3582 4.0735 0.9339 10 1 6.1464 4.1040 1.6862 11 7 5.1080 5.3795 0.3190 12 16 5.7262 6.7519 1.0094 13 8 5.3423 7.8317 0.1691 14 8 5.3998 6.6881 2.3909 15 6 7.4818 6.6418 0.9072 16 6 8.1985 6.0559 1.9338 17 6 9.5754 5.9656 1.8516 18 6 10.2364 6.4697 0.7473 19 6 11.7379 6.3755 0.6598 20 8 12.2996 7.6893 0.6800 21 14 12.3846 5.4015 2.1103 22 6 9.5201 7.0599 -0.2772 23 6 8.1428 7.1464 -0.1970 24 6 5.5235 2.9341 -0.0856 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9565 0.7806 0.8892 29 1 3.9557 0.7810 -0.8908 30 1 3.2558 4.0406 1.6299 31 1 4.2510 2.6297 2.1957 32 1 4.5801 5.4402 -0.4926 33 1 7.6823 5.6654 2.7984 34 1 10.1350 5.5043 2.6519 35 1 12.0173 5.8752 -0.2674 36 1 13.2651 7.7053 0.6271 37 1 12.0103 6.0734 3.3806 38 1 11.8327 4.0231 2.0831 39 1 10.0366 7.4534 -1.1403 40 1 7.5833 7.6079 -0.9973 41 1 6.0926 2.0863 0.2957 42 1 5.8668 3.2701 -1.0640 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16627172_13421422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:33 Heat of formation + Delta-G solvation = -135.539889 kcal Electronic energy + Delta-G solvation = -27559.977480 eV Core-core repulsion = 23406.787128 eV Total energy + Delta-G solvation = -4153.190352 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65172 -40.75246 -40.24670 -38.50672 -37.67916 -37.52716 -37.14340 -34.47987 -33.25638 -32.36217 -31.23407 -28.37922 -27.27165 -26.63285 -24.69791 -24.21711 -22.90559 -21.94513 -21.08424 -20.29625 -19.26169 -18.70029 -18.58435 -18.47249 -17.66480 -17.52072 -17.40690 -17.02964 -16.76628 -16.10776 -16.02734 -15.49692 -15.41770 -15.26385 -14.83765 -14.73607 -14.38563 -14.25322 -14.12519 -13.96601 -13.91377 -13.42199 -13.40480 -13.33836 -13.26363 -12.94837 -12.86669 -12.85600 -12.44589 -12.17797 -11.95369 -11.92587 -11.84004 -11.72082 -11.37185 -11.20039 -10.66968 -10.52494 -10.31822 -10.24769 -4.96670 -0.87369 -0.50796 0.03034 1.18145 1.23662 1.61328 1.77263 1.78983 1.93258 2.19413 2.57775 3.08022 3.24335 3.45005 3.51945 3.54713 3.61921 3.73580 3.81443 3.82007 3.92312 4.02400 4.05769 4.19410 4.24988 4.26404 4.30010 4.43539 4.48066 4.51611 4.62725 4.67930 4.68848 4.78060 4.81871 4.84711 4.85610 5.01986 5.11842 5.13184 5.15550 5.39312 5.52615 5.55656 5.93389 6.71642 6.83460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.453 3.547 4 O -0.543 6.543 5 C -0.100 4.100 6 C -0.104 4.104 7 H 0.087 0.913 8 C -0.155 4.155 9 C 0.114 3.886 10 H 0.113 0.887 11 N -1.088 6.088 12 S 2.713 3.287 13 O -0.985 6.985 14 O -0.983 6.983 15 C -0.676 4.676 16 C -0.023 4.023 17 C -0.159 4.159 18 C -0.032 4.032 19 C -0.089 4.089 20 O -0.563 6.563 21 Si 0.772 3.228 22 C -0.117 4.117 23 C -0.022 4.022 24 C -0.122 4.122 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.428 0.572 33 H 0.155 0.845 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.407 0.593 37 H -0.298 1.298 38 H -0.278 1.278 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.194 -8.353 -3.347 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.298 3.702 4 O -0.433 6.433 5 C -0.137 4.137 6 C -0.122 4.122 7 H 0.105 0.895 8 C -0.194 4.194 9 C 0.007 3.993 10 H 0.131 0.869 11 N -0.849 5.849 12 S 2.804 3.196 13 O -0.976 6.976 14 O -0.972 6.972 15 C -0.764 4.764 16 C -0.042 4.042 17 C -0.178 4.178 18 C -0.032 4.032 19 C -0.199 4.199 20 O -0.374 6.374 21 Si 0.678 3.322 22 C -0.135 4.135 23 C -0.041 4.041 24 C -0.161 4.161 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.265 0.735 33 H 0.173 0.827 34 H 0.149 0.851 35 H 0.125 0.875 36 H 0.259 0.741 37 H -0.226 1.226 38 H -0.205 1.205 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.142 0.858 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.770 -7.662 -2.069 10.431 hybrid contribution -0.770 0.290 -0.636 1.040 sum 6.000 -7.371 -2.704 9.881 Atomic orbital electron populations 1.23461 0.75441 1.05403 1.02175 1.86513 1.24498 1.33619 1.83838 1.24651 0.93732 0.80776 0.71020 1.90680 1.68375 1.37484 1.46801 1.21604 0.84812 0.99060 1.08235 1.22449 0.97494 0.94078 0.98218 0.89497 1.23654 0.97753 1.00278 0.97725 1.21884 0.98536 0.82029 0.96857 0.86927 1.55086 1.67387 1.20529 1.41861 1.01131 0.73497 0.72214 0.72797 1.93570 1.82567 1.52492 1.68934 1.93573 1.83027 1.86471 1.34168 1.30833 1.26252 1.15335 1.03982 1.21052 0.94177 0.92583 0.96371 1.21220 0.95287 1.03077 0.98172 1.20142 0.95679 0.93939 0.93440 1.24971 0.90727 0.91687 1.12477 1.86441 1.28096 1.25310 1.97540 0.94168 0.89247 0.75026 0.73790 1.21429 0.93607 0.98647 0.99857 1.21251 0.95405 0.92127 0.95358 1.23406 0.94471 0.98006 1.00216 0.92294 0.92391 0.85462 0.84996 0.84965 0.92723 0.87148 0.73519 0.82706 0.85063 0.87484 0.74093 1.22644 1.20460 0.82718 0.82605 0.85811 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.80 10.57 -51.42 -0.54 -1.34 16 3 C 0.45 1.23 7.96 71.24 0.57 1.80 16 4 O -0.54 -5.50 15.54 21.98 0.34 -5.16 16 5 C -0.10 0.61 5.64 29.85 0.17 0.78 16 6 C -0.10 0.45 2.93 -10.26 -0.03 0.42 16 7 H 0.09 -0.07 7.70 -2.39 -0.02 -0.09 16 8 C -0.15 0.27 7.44 31.18 0.23 0.51 16 9 C 0.11 -0.44 4.44 45.58 0.20 -0.23 16 10 H 0.11 -0.68 7.80 -2.38 -0.02 -0.70 16 11 N -1.09 1.08 5.73 -166.95 -0.96 0.13 16 12 S 2.71 14.80 5.68 -56.49 -0.32 14.48 16 13 O -0.99 -11.20 17.28 -128.00 -2.21 -13.41 16 14 O -0.98 -11.35 17.04 -128.00 -2.18 -13.53 16 15 C -0.68 -2.46 5.95 22.27 0.13 -2.33 16 16 C -0.02 -0.07 9.27 22.27 0.21 0.13 16 17 C -0.16 -0.52 8.67 22.27 0.19 -0.33 16 18 C -0.03 -0.07 5.38 -19.87 -0.11 -0.17 16 19 C -0.09 0.33 2.79 71.24 0.20 0.53 16 20 O -0.56 1.46 12.81 -148.98 -1.91 -0.44 16 21 Si 0.77 -3.75 29.85 68.60 2.05 -1.70 16 22 C -0.12 -0.18 9.69 22.27 0.22 0.03 16 23 C -0.02 -0.06 9.52 22.27 0.21 0.16 16 24 C -0.12 1.07 7.43 31.12 0.23 1.30 16 25 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 26 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 27 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 28 H 0.13 -1.38 7.87 -2.38 -0.02 -1.40 16 29 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 30 H 0.05 0.22 8.14 -2.39 -0.02 0.21 16 31 H 0.11 -0.59 7.92 -2.39 -0.02 -0.60 16 32 H 0.43 -1.53 8.79 -96.74 -0.85 -2.38 16 33 H 0.16 0.01 7.61 -2.91 -0.02 -0.01 16 34 H 0.13 0.22 4.87 -2.91 -0.01 0.20 16 35 H 0.11 -0.94 7.96 -2.38 -0.02 -0.96 16 36 H 0.41 -5.36 8.74 -74.06 -0.65 -6.01 16 37 H -0.30 -1.03 7.05 99.48 0.70 -0.33 16 38 H -0.28 0.19 7.11 99.48 0.71 0.89 16 39 H 0.16 -0.37 8.06 -2.91 -0.02 -0.39 16 40 H 0.16 -0.06 7.62 -2.91 -0.02 -0.09 16 41 H 0.12 -1.62 8.10 -2.39 -0.02 -1.64 16 42 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 Total: 0.00 -31.08 368.18 -2.51 -33.59 By element: Atomic # 1 Polarization: -15.98 SS G_CDS: -0.40 Total: -16.38 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 3.62 Total: 3.77 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -0.96 Total: 0.13 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -6.50 Total: -33.88 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.05 Total: -1.70 kcal Atomic # 16 Polarization: 14.80 SS G_CDS: -0.32 Total: 14.48 kcal Total: -31.08 -2.51 -33.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_13421422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.946 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds