Wall clock time and date at job start Mon Mar 8 2021 13:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47226 * 179.97438 * 5 3 2 7 7 H 1.09005 * 112.84828 * 43.80921 * 6 5 3 8 8 C 1.53783 * 113.61159 * 175.00332 * 6 5 3 9 9 C 1.53787 * 87.08050 * 139.98303 * 8 6 5 10 10 H 1.08997 * 113.61278 * 219.93004 * 9 8 6 11 11 N 1.46497 * 113.61303 * 89.11441 * 9 8 6 12 12 S 1.65605 * 119.99941 * 144.99992 * 11 9 8 13 13 O 1.42096 * 106.40104 * 178.54297 * 12 11 9 14 14 O 1.42104 * 106.40029 * 311.45751 * 12 11 9 15 15 C 1.76192 * 107.21583 * 65.00068 * 12 11 9 16 16 C 1.33391 * 125.20619 * 90.00080 * 15 12 11 17 17 C 1.50699 * 122.53517 * 359.95883 * 16 15 12 18 18 O 1.42898 * 109.47806 * 74.99800 * 17 16 15 19 19 Si 1.86301 * 109.47121 * 194.99946 * 17 16 15 20 20 C 1.38418 * 114.92524 * 179.97438 * 16 15 12 21 21 C 1.33388 * 114.91973 * 0.02562 * 20 16 15 22 22 S 1.75883 * 125.20190 * 269.69092 * 15 12 11 23 23 C 1.53778 * 113.61735 * 272.50200 * 6 5 3 24 24 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 27 27 H 1.08992 * 109.47018 * 300.00694 * 5 3 2 28 28 H 1.09009 * 109.46602 * 60.00278 * 5 3 2 29 29 H 1.09005 * 113.61273 * 254.53120 * 8 6 5 30 30 H 1.09002 * 113.61492 * 25.34810 * 8 6 5 31 31 H 0.97005 * 120.00521 * 325.00745 * 11 9 8 32 32 H 1.09001 * 109.47114 * 314.99614 * 17 16 15 33 33 H 0.96696 * 114.00332 * 180.02562 * 18 17 16 34 34 H 1.48500 * 110.00448 * 178.68030 * 19 17 16 35 35 H 1.48502 * 109.99815 * 299.99714 * 19 17 16 36 36 H 1.08003 * 122.54411 * 179.97438 * 20 16 15 37 37 H 1.07997 * 125.20570 * 180.02562 * 21 20 16 38 38 H 1.08999 * 113.61403 * 334.56804 * 23 6 5 39 39 H 1.08994 * 113.61749 * 105.46902 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 1 3.4246 3.3540 0.6946 8 6 5.5208 2.9350 0.1231 9 6 5.3817 4.0667 -0.9089 10 1 6.1888 4.0917 -1.6409 11 7 5.1158 5.3772 -0.3103 12 16 5.7516 6.7445 -0.9950 13 8 5.2898 7.8370 -0.2125 14 8 7.1290 6.4773 -1.2201 15 6 5.0131 6.9236 -2.5846 16 6 3.8887 7.5947 -2.8390 17 6 3.1012 8.2947 -1.7615 18 8 3.7766 9.4953 -1.3814 19 14 1.4042 8.7142 -2.4058 20 6 3.4999 7.5992 -4.1674 21 6 4.3082 6.9313 -4.9919 22 16 5.6498 6.2513 -4.0799 23 6 4.1163 3.3495 -1.4082 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 3.9557 0.7810 0.8907 28 1 3.9564 0.7807 -0.8893 29 1 5.8390 3.2783 1.1075 30 1 6.0994 2.0838 -0.2358 31 1 4.5675 5.4440 0.4871 32 1 3.0092 7.6398 -0.8951 33 1 3.3254 9.9983 -0.6897 34 1 0.6066 9.3765 -1.3426 35 1 1.5160 9.6069 -3.5873 36 1 2.6091 8.1045 -4.5103 37 1 4.1640 6.8283 -6.0572 38 1 4.3110 2.6122 -2.1870 39 1 3.3008 4.0273 -1.6600 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16627172_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:38 Heat of formation + Delta-G solvation = -116.618056 kcal Electronic energy + Delta-G solvation = -27140.293436 eV Core-core repulsion = 23077.075843 eV Total energy + Delta-G solvation = -4063.217593 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.63205 -40.34250 -39.92544 -38.04434 -37.43771 -37.08638 -36.73305 -34.49459 -31.45334 -31.31116 -28.44231 -27.97582 -26.81311 -24.71623 -24.14156 -21.96883 -21.52455 -20.80521 -19.74525 -19.33391 -18.62520 -18.55543 -18.31458 -17.64921 -17.49219 -17.32425 -16.92159 -16.19850 -15.89060 -15.66939 -15.58853 -15.39136 -14.86567 -14.58113 -14.24736 -14.19180 -14.14997 -14.02271 -13.58660 -13.49332 -13.18188 -13.03573 -12.97706 -12.92520 -12.88155 -12.59744 -12.44648 -12.32737 -12.08790 -11.80279 -11.75915 -11.56220 -11.37444 -11.36223 -10.62920 -10.43308 -10.34698 -9.60476 -5.01738 -0.76766 -0.47927 0.34274 0.68084 1.19666 1.22274 1.23874 1.56040 1.72111 1.90227 2.00183 2.74040 3.25757 3.30921 3.34337 3.53650 3.59884 3.65984 3.83815 3.84961 3.93348 4.03594 4.14686 4.18114 4.21323 4.27010 4.27945 4.30012 4.40937 4.58051 4.60006 4.66283 4.69827 4.86539 4.92387 4.97350 4.98618 5.08133 5.32515 5.43242 5.86467 6.56000 6.75277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.504 6.504 5 C -0.106 4.106 6 C -0.102 4.102 7 H 0.104 0.896 8 C -0.136 4.136 9 C 0.122 3.878 10 H 0.107 0.893 11 N -1.096 6.096 12 S 2.715 3.285 13 O -0.929 6.929 14 O -0.950 6.950 15 C -0.776 4.776 16 C 0.057 3.943 17 C -0.076 4.076 18 O -0.510 6.510 19 Si 0.686 3.314 20 C -0.163 4.163 21 C -0.164 4.164 22 S 0.225 5.775 23 C -0.151 4.151 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.420 0.580 32 H 0.080 0.920 33 H 0.383 0.617 34 H -0.255 1.255 35 H -0.251 1.251 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.095 0.905 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -6.909 -1.700 7.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.391 6.391 5 C -0.143 4.143 6 C -0.121 4.121 7 H 0.122 0.878 8 C -0.176 4.176 9 C 0.013 3.987 10 H 0.125 0.875 11 N -0.855 5.855 12 S 2.800 3.200 13 O -0.919 6.919 14 O -0.940 6.940 15 C -0.977 4.977 16 C 0.039 3.961 17 C -0.188 4.188 18 O -0.317 6.317 19 Si 0.586 3.414 20 C -0.193 4.193 21 C -0.302 4.302 22 S 0.492 5.508 23 C -0.190 4.190 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.256 0.744 32 H 0.098 0.902 33 H 0.232 0.768 34 H -0.180 1.180 35 H -0.175 1.175 36 H 0.172 0.828 37 H 0.196 0.804 38 H 0.114 0.886 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.856 -6.521 -2.556 7.246 hybrid contribution -1.818 1.506 0.818 2.498 sum -3.674 -5.015 -1.738 6.456 Atomic orbital electron populations 1.23292 0.75990 1.03904 1.02668 1.86512 1.23750 1.33613 1.84060 1.23856 0.92335 0.81363 0.72313 1.90681 1.67256 1.36284 1.44922 1.21465 0.87503 0.99179 1.06191 1.22492 0.96516 0.93919 0.99124 0.87761 1.23386 0.95545 0.98271 1.00361 1.21653 0.98192 0.82265 0.96541 0.87521 1.55424 1.69606 1.19984 1.40522 1.01500 0.73552 0.72362 0.72606 1.93659 1.81553 1.49661 1.66987 1.93622 1.29674 1.84894 1.85846 1.35727 1.14680 1.21062 1.26245 1.18021 0.91595 0.92120 0.94376 1.24690 1.05465 0.90156 0.98524 1.86606 1.50062 1.34834 1.60201 0.95244 0.75681 0.89282 0.81203 1.20278 1.03116 1.03871 0.92024 1.26175 0.97838 1.01638 1.04514 1.84241 1.22935 1.49649 0.93994 1.23594 0.98386 1.00324 0.96694 0.91808 0.87990 0.91759 0.87251 0.87257 0.89944 0.88074 0.74407 0.90205 0.76809 1.17953 1.17537 0.82845 0.80386 0.88613 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.05 10.56 101.05 1.07 1.01 16 2 O -0.36 -0.08 10.57 -39.25 -0.41 -0.50 16 3 C 0.46 0.06 7.96 36.01 0.29 0.34 16 4 O -0.50 -1.40 15.51 -18.75 -0.29 -1.69 16 5 C -0.11 0.34 5.65 -27.88 -0.16 0.19 16 6 C -0.10 0.29 2.97 -89.81 -0.27 0.03 16 7 H 0.10 -0.19 7.64 -51.93 -0.40 -0.59 16 8 C -0.14 0.48 7.43 -25.91 -0.19 0.28 16 9 C 0.12 -0.26 4.51 -67.12 -0.30 -0.56 16 10 H 0.11 -0.23 7.77 -51.93 -0.40 -0.64 16 11 N -1.10 1.09 5.73 -4.20 -0.02 1.06 16 12 S 2.71 7.15 5.63 -107.50 -0.61 6.54 16 13 O -0.93 -4.44 14.29 -66.03 -0.94 -5.38 16 14 O -0.95 -5.20 17.43 -57.17 -1.00 -6.20 16 15 C -0.78 -1.56 6.54 29.04 0.19 -1.37 16 16 C 0.06 0.10 5.17 -106.25 -0.55 -0.45 16 17 C -0.08 -0.10 1.78 36.01 0.06 -0.03 16 18 O -0.51 -1.64 11.10 -56.67 -0.63 -2.27 16 19 Si 0.69 -0.32 30.42 -169.99 -5.17 -5.49 16 20 C -0.16 -0.03 8.74 -41.21 -0.36 -0.39 16 21 C -0.16 0.15 11.23 29.04 0.33 0.48 16 22 S 0.22 0.08 23.21 -107.50 -2.50 -2.41 16 23 C -0.15 0.42 7.43 -25.92 -0.19 0.23 16 24 H 0.06 -0.08 8.13 -51.93 -0.42 -0.51 16 25 H 0.10 -0.37 8.14 -51.93 -0.42 -0.79 16 26 H 0.06 -0.09 8.13 -51.93 -0.42 -0.52 16 27 H 0.11 -0.50 8.14 -51.93 -0.42 -0.92 16 28 H 0.11 -0.53 7.84 -51.92 -0.41 -0.94 16 29 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 30 H 0.10 -0.49 8.10 -51.93 -0.42 -0.92 16 31 H 0.42 -1.13 8.79 -34.47 -0.30 -1.44 16 32 H 0.08 -0.02 7.16 -51.93 -0.37 -0.39 16 33 H 0.38 -0.14 8.74 45.56 0.40 0.25 16 34 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 35 H -0.25 -0.46 6.86 56.52 0.39 -0.07 16 36 H 0.15 -0.20 5.57 -52.48 -0.29 -0.49 16 37 H 0.18 -0.68 8.06 -52.49 -0.42 -1.10 16 38 H 0.10 -0.39 7.89 -51.93 -0.41 -0.80 16 39 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 LS Contribution 354.21 15.07 5.34 5.34 Total: 0.00 -11.27 354.21 -11.10 -22.37 By element: Atomic # 1 Polarization: -6.35 SS G_CDS: -4.78 Total: -11.12 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.09 Total: -0.24 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -0.02 Total: 1.06 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -3.27 Total: -16.04 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -5.17 Total: -5.49 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -3.10 Total: 4.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -11.27 -11.10 -22.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.248 kcal (2) G-P(sol) polarization free energy of solvation -11.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds