Wall clock time and date at job start Mon Mar 8 2021 13:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47226 * 179.97438 * 5 3 2 7 7 H 1.09005 * 112.84828 * 43.80921 * 6 5 3 8 8 C 1.53783 * 113.61159 * 175.00332 * 6 5 3 9 9 C 1.53787 * 87.08050 * 139.98303 * 8 6 5 10 10 H 1.08997 * 113.61278 * 219.93004 * 9 8 6 11 11 N 1.46497 * 113.61303 * 89.11441 * 9 8 6 12 12 S 1.65605 * 119.99941 * 144.99992 * 11 9 8 13 13 O 1.42096 * 106.40104 * 178.54297 * 12 11 9 14 14 O 1.42104 * 106.40029 * 311.45751 * 12 11 9 15 15 C 1.76192 * 107.21583 * 65.00068 * 12 11 9 16 16 C 1.33391 * 125.20619 * 90.00080 * 15 12 11 17 17 C 1.50699 * 122.53517 * 359.95883 * 16 15 12 18 18 O 1.42898 * 109.47806 * 74.99800 * 17 16 15 19 19 Si 1.86301 * 109.47121 * 194.99946 * 17 16 15 20 20 C 1.38418 * 114.92524 * 179.97438 * 16 15 12 21 21 C 1.33388 * 114.91973 * 0.02562 * 20 16 15 22 22 S 1.75883 * 125.20190 * 269.69092 * 15 12 11 23 23 C 1.53778 * 113.61735 * 272.50200 * 6 5 3 24 24 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 27 27 H 1.08992 * 109.47018 * 300.00694 * 5 3 2 28 28 H 1.09009 * 109.46602 * 60.00278 * 5 3 2 29 29 H 1.09005 * 113.61273 * 254.53120 * 8 6 5 30 30 H 1.09002 * 113.61492 * 25.34810 * 8 6 5 31 31 H 0.97005 * 120.00521 * 325.00745 * 11 9 8 32 32 H 1.09001 * 109.47114 * 314.99614 * 17 16 15 33 33 H 0.96696 * 114.00332 * 180.02562 * 18 17 16 34 34 H 1.48500 * 110.00448 * 178.68030 * 19 17 16 35 35 H 1.48502 * 109.99815 * 299.99714 * 19 17 16 36 36 H 1.08003 * 122.54411 * 179.97438 * 20 16 15 37 37 H 1.07997 * 125.20570 * 180.02562 * 21 20 16 38 38 H 1.08999 * 113.61403 * 334.56804 * 23 6 5 39 39 H 1.08994 * 113.61749 * 105.46902 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 1 3.4246 3.3540 0.6946 8 6 5.5208 2.9350 0.1231 9 6 5.3817 4.0667 -0.9089 10 1 6.1888 4.0917 -1.6409 11 7 5.1158 5.3772 -0.3103 12 16 5.7516 6.7445 -0.9950 13 8 5.2898 7.8370 -0.2125 14 8 7.1290 6.4773 -1.2201 15 6 5.0131 6.9236 -2.5846 16 6 3.8887 7.5947 -2.8390 17 6 3.1012 8.2947 -1.7615 18 8 3.7766 9.4953 -1.3814 19 14 1.4042 8.7142 -2.4058 20 6 3.4999 7.5992 -4.1674 21 6 4.3082 6.9313 -4.9919 22 16 5.6498 6.2513 -4.0799 23 6 4.1163 3.3495 -1.4082 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 3.9557 0.7810 0.8907 28 1 3.9564 0.7807 -0.8893 29 1 5.8390 3.2783 1.1075 30 1 6.0994 2.0838 -0.2358 31 1 4.5675 5.4440 0.4871 32 1 3.0092 7.6398 -0.8951 33 1 3.3254 9.9983 -0.6897 34 1 0.6066 9.3765 -1.3426 35 1 1.5160 9.6069 -3.5873 36 1 2.6091 8.1045 -4.5103 37 1 4.1640 6.8283 -6.0572 38 1 4.3110 2.6122 -2.1870 39 1 3.3008 4.0273 -1.6600 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16627172_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:37 Heat of formation + Delta-G solvation = -119.841463 kcal Electronic energy + Delta-G solvation = -27140.433214 eV Core-core repulsion = 23077.075843 eV Total energy + Delta-G solvation = -4063.357370 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56671 -40.18853 -39.96775 -38.30318 -37.44049 -37.22666 -37.00053 -34.41358 -31.46685 -31.16217 -28.31020 -28.04742 -26.55729 -24.57019 -24.14253 -21.89685 -21.60027 -20.69349 -19.72672 -19.37109 -18.75751 -18.53074 -18.43806 -17.58421 -17.43786 -17.34687 -16.89603 -16.26183 -15.93013 -15.72278 -15.41949 -15.32085 -14.74000 -14.63471 -14.26410 -14.22755 -14.10823 -13.92152 -13.64497 -13.29713 -13.28841 -13.20851 -13.15525 -12.84387 -12.81546 -12.65060 -12.56978 -12.43984 -11.88337 -11.75823 -11.64232 -11.60811 -11.29917 -11.13874 -10.55526 -10.47423 -10.36221 -9.62439 -5.00104 -0.84717 -0.57852 0.30754 0.70107 1.18243 1.23222 1.26546 1.55480 1.86495 1.87223 1.94501 2.58672 3.22445 3.42260 3.53280 3.59509 3.81884 3.83062 3.86836 3.95117 4.00376 4.13116 4.22396 4.31698 4.33897 4.34041 4.51021 4.55403 4.70090 4.71443 4.74896 4.91137 4.92317 4.93833 5.08561 5.09608 5.20514 5.22451 5.47169 5.60309 5.99133 6.56257 6.79790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.455 3.545 4 O -0.538 6.538 5 C -0.101 4.101 6 C -0.102 4.102 7 H 0.089 0.911 8 C -0.127 4.127 9 C 0.108 3.892 10 H 0.107 0.893 11 N -1.086 6.086 12 S 2.724 3.276 13 O -0.959 6.959 14 O -0.985 6.985 15 C -0.796 4.796 16 C 0.048 3.952 17 C -0.101 4.101 18 O -0.536 6.536 19 Si 0.775 3.225 20 C -0.180 4.180 21 C -0.146 4.146 22 S 0.224 5.776 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.124 0.876 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.427 0.573 32 H 0.088 0.912 33 H 0.393 0.607 34 H -0.283 1.283 35 H -0.279 1.279 36 H 0.169 0.831 37 H 0.211 0.789 38 H 0.113 0.887 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 -8.428 -2.714 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C 0.300 3.700 4 O -0.428 6.428 5 C -0.138 4.138 6 C -0.120 4.120 7 H 0.108 0.892 8 C -0.167 4.167 9 C 0.001 3.999 10 H 0.125 0.875 11 N -0.848 5.848 12 S 2.812 3.188 13 O -0.949 6.949 14 O -0.975 6.975 15 C -0.999 4.999 16 C 0.030 3.970 17 C -0.211 4.211 18 O -0.346 6.346 19 Si 0.677 3.323 20 C -0.209 4.209 21 C -0.284 4.284 22 S 0.491 5.509 23 C -0.187 4.187 24 H 0.077 0.923 25 H 0.142 0.858 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.099 0.901 30 H 0.141 0.859 31 H 0.265 0.735 32 H 0.106 0.894 33 H 0.244 0.756 34 H -0.210 1.210 35 H -0.205 1.205 36 H 0.186 0.814 37 H 0.228 0.772 38 H 0.132 0.868 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.095 -8.068 -3.533 9.053 hybrid contribution -1.766 1.950 1.115 2.857 sum -3.860 -6.118 -2.418 7.628 Atomic orbital electron populations 1.23450 0.75423 1.05268 1.02298 1.86517 1.24517 1.33773 1.83878 1.24553 0.93556 0.80802 0.71126 1.90667 1.68232 1.37253 1.46635 1.21591 0.85073 0.99101 1.08071 1.22426 0.96753 0.94126 0.98710 0.89242 1.23412 0.95239 0.98123 0.99880 1.21897 0.98823 0.81856 0.97372 0.87492 1.55128 1.69468 1.19595 1.40575 1.00813 0.72983 0.72424 0.72629 1.93612 1.81817 1.51436 1.68006 1.93572 1.32020 1.85479 1.86456 1.35548 1.15378 1.22543 1.26408 1.18275 0.91589 0.91866 0.95246 1.25138 1.06779 0.89930 0.99213 1.86558 1.51494 1.35656 1.60864 0.94245 0.72790 0.87151 0.78088 1.20462 1.04137 1.04754 0.91511 1.26584 0.96272 0.99740 1.05812 1.84213 1.23560 1.49640 0.93474 1.23628 0.97408 1.00357 0.97300 0.92330 0.85805 0.92032 0.85489 0.84976 0.90088 0.85915 0.73511 0.89443 0.75627 1.20979 1.20505 0.81413 0.77171 0.86826 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 113.37 1.20 1.11 16 2 O -0.37 -0.06 10.57 -51.40 -0.54 -0.60 16 3 C 0.45 0.06 7.96 71.24 0.57 0.62 16 4 O -0.54 -3.41 15.51 21.96 0.34 -3.07 16 5 C -0.10 0.78 5.65 29.85 0.17 0.95 16 6 C -0.10 0.63 2.97 -10.27 -0.03 0.60 16 7 H 0.09 -0.27 7.64 -2.38 -0.02 -0.29 16 8 C -0.13 0.99 7.43 31.12 0.23 1.23 16 9 C 0.11 -0.44 4.51 45.52 0.21 -0.23 16 10 H 0.11 -0.44 7.77 -2.39 -0.02 -0.46 16 11 N -1.09 0.91 5.73 -167.19 -0.96 -0.05 16 12 S 2.72 19.03 5.63 -56.49 -0.32 18.71 16 13 O -0.96 -11.29 14.29 -119.53 -1.71 -13.00 16 14 O -0.99 -12.60 17.43 -128.00 -2.23 -14.83 16 15 C -0.80 -3.97 6.54 66.72 0.44 -3.53 16 16 C 0.05 0.19 5.17 -20.92 -0.11 0.09 16 17 C -0.10 -0.36 1.78 71.24 0.13 -0.23 16 18 O -0.54 -4.34 11.10 -128.48 -1.43 -5.76 16 19 Si 0.78 -0.53 30.42 68.60 2.09 1.56 16 20 C -0.18 0.01 8.74 21.21 0.19 0.20 16 21 C -0.15 0.44 11.23 66.72 0.75 1.19 16 22 S 0.22 0.17 23.21 -56.49 -1.31 -1.14 16 23 C -0.15 0.88 7.43 31.12 0.23 1.11 16 24 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 25 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 26 H 0.06 -0.15 8.13 -2.38 -0.02 -0.17 16 27 H 0.13 -1.39 8.14 -2.39 -0.02 -1.41 16 28 H 0.13 -1.60 7.84 -2.38 -0.02 -1.62 16 29 H 0.08 -0.57 8.14 -2.38 -0.02 -0.59 16 30 H 0.12 -1.46 8.10 -2.39 -0.02 -1.48 16 31 H 0.43 -1.70 8.79 -96.74 -0.85 -2.55 16 32 H 0.09 0.09 7.16 -2.39 -0.02 0.07 16 33 H 0.39 0.44 8.74 -74.06 -0.65 -0.21 16 34 H -0.28 -1.05 7.11 99.48 0.71 -0.35 16 35 H -0.28 -1.05 6.86 99.48 0.68 -0.37 16 36 H 0.17 -0.59 5.57 -2.91 -0.02 -0.60 16 37 H 0.21 -2.15 8.06 -2.91 -0.02 -2.17 16 38 H 0.11 -1.09 7.89 -2.39 -0.02 -1.11 16 39 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -27.29 354.21 -2.48 -29.77 By element: Atomic # 1 Polarization: -14.30 SS G_CDS: -0.37 Total: -14.68 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 3.96 Total: 3.10 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -0.96 Total: -0.05 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -5.57 Total: -37.27 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: 2.09 Total: 1.56 kcal Atomic # 16 Polarization: 19.20 SS G_CDS: -1.63 Total: 17.57 kcal Total: -27.29 -2.48 -29.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.071 kcal (2) G-P(sol) polarization free energy of solvation -27.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds