Wall clock time and date at job start Mon Mar 8 2021 13:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99642 * 2 1 4 4 O 1.20824 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99889 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47599 * 179.97438 * 5 3 2 7 7 H 1.09001 * 112.84226 * 316.19625 * 6 5 3 8 8 C 1.54054 * 113.69625 * 87.45981 * 6 5 3 9 9 C 1.53788 * 86.98430 * 139.99532 * 8 6 5 10 10 H 1.08997 * 113.61606 * 219.98475 * 9 8 6 11 11 N 1.46496 * 113.61286 * 89.16022 * 9 8 6 12 12 S 1.65604 * 119.99832 * 118.06739 * 11 9 8 13 13 O 1.42103 * 106.40198 * 312.76857 * 12 11 9 14 14 O 1.42096 * 106.40645 * 179.84658 * 12 11 9 15 15 C 1.76202 * 107.21634 * 66.30341 * 12 11 9 16 16 C 1.33394 * 122.53669 * 165.16276 * 15 12 11 17 17 C 1.50696 * 125.20292 * 0.02604 * 16 15 12 18 18 O 1.42896 * 109.47459 * 38.63540 * 17 16 15 19 19 Si 1.86294 * 109.47173 * 158.63684 * 17 16 15 20 20 S 1.75889 * 109.59121 * 179.75659 * 16 15 12 21 21 C 1.75880 * 90.96904 * 0.22869 * 20 16 15 22 22 C 1.33388 * 109.60022 * 0.02562 * 21 20 16 23 23 C 1.53771 * 113.61795 * 184.99942 * 6 5 3 24 24 H 1.09007 * 109.47264 * 299.99640 * 1 2 3 25 25 H 1.08994 * 109.47275 * 60.00582 * 1 2 3 26 26 H 1.09009 * 109.46845 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47215 * 59.99010 * 5 3 2 28 28 H 1.09007 * 109.46996 * 299.99996 * 5 3 2 29 29 H 1.09003 * 113.61180 * 25.49220 * 8 6 5 30 30 H 1.08998 * 113.69717 * 254.50798 * 8 6 5 31 31 H 0.96994 * 120.00560 * 298.06607 * 11 9 8 32 32 H 1.09005 * 109.46864 * 278.63490 * 17 16 15 33 33 H 0.96699 * 114.00679 * 175.01007 * 18 17 16 34 34 H 1.48502 * 109.99949 * 299.99392 * 19 17 16 35 35 H 1.48497 * 110.00253 * 61.31435 * 19 17 16 36 36 H 1.08008 * 125.20184 * 180.02562 * 21 20 16 37 37 H 1.07999 * 122.54438 * 179.97438 * 22 21 20 38 38 H 1.08999 * 113.61674 * 105.38351 * 23 6 5 39 39 H 1.09000 * 113.61393 * 334.47733 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.4246 3.3533 -0.6964 8 6 4.1163 3.3539 1.4080 9 6 5.3814 4.0690 0.9048 10 1 6.1883 4.0957 1.6370 11 7 5.1154 5.3780 0.3031 12 16 5.7646 6.7453 0.9750 13 8 5.5146 6.6637 2.3715 14 8 5.3307 7.8329 0.1701 15 6 7.5124 6.6450 0.7759 16 6 8.3149 7.6977 0.9409 17 6 7.8613 9.0862 1.3113 18 8 6.8019 9.0024 2.2666 19 14 9.2886 10.0300 2.0481 20 16 9.9842 7.2154 0.6677 21 6 9.4828 5.5642 0.3281 22 6 8.1564 5.4689 0.4322 23 6 5.5207 2.9348 -0.1245 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.9557 0.7809 -0.8907 28 1 3.9564 0.7806 0.8892 29 1 4.3116 2.6185 2.1885 30 1 3.3016 4.0330 1.6592 31 1 4.5592 5.4439 -0.4887 32 1 7.5062 9.6025 0.4194 33 1 6.5114 9.8591 2.6081 34 1 9.7819 9.3364 3.2650 35 1 10.3845 10.1517 1.0535 36 1 10.1473 4.7515 0.0740 37 1 7.6256 4.5433 0.2653 38 1 5.8391 3.2759 -1.1096 39 1 6.0993 2.0851 0.2378 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16627172_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:42 Heat of formation + Delta-G solvation = -118.200919 kcal Electronic energy + Delta-G solvation = -26843.311253 eV Core-core repulsion = 22780.025022 eV Total energy + Delta-G solvation = -4063.286231 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.60701 -40.36176 -39.52534 -37.87748 -37.65644 -37.39552 -36.49148 -34.47427 -31.98855 -31.27423 -28.41104 -27.53586 -26.82337 -24.85955 -24.22197 -21.91714 -21.69950 -20.89058 -19.96615 -18.92024 -18.55194 -18.48710 -18.06214 -17.66153 -17.55993 -17.40900 -17.07646 -16.35805 -15.94313 -15.65391 -15.50603 -15.22829 -15.05013 -14.78513 -14.49164 -14.17860 -14.10278 -14.01526 -13.79655 -13.44892 -13.12172 -13.03736 -12.87804 -12.83760 -12.77870 -12.66211 -12.53362 -12.10658 -12.06296 -11.80606 -11.75042 -11.66796 -11.34746 -11.31895 -10.87477 -10.55339 -10.10367 -9.80301 -5.33719 -0.55281 -0.50483 0.30483 0.63519 0.96328 1.14648 1.25705 1.44364 1.74872 1.76328 2.05346 2.88209 3.02086 3.30030 3.36058 3.48034 3.55206 3.67218 3.70903 3.86469 3.96113 4.09102 4.13069 4.18339 4.24901 4.27494 4.30825 4.32790 4.41537 4.55041 4.60134 4.61389 4.66753 4.77424 4.86773 5.01386 5.05772 5.08197 5.35959 5.46329 5.92890 6.38498 6.78737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.105 4.105 6 C -0.102 4.102 7 H 0.105 0.895 8 C -0.145 4.145 9 C 0.121 3.879 10 H 0.106 0.894 11 N -1.103 6.103 12 S 2.724 3.276 13 O -0.931 6.931 14 O -0.950 6.950 15 C -0.658 4.658 16 C -0.055 4.055 17 C -0.079 4.079 18 O -0.545 6.545 19 Si 0.691 3.309 20 S 0.139 5.861 21 C -0.207 4.207 22 C -0.089 4.089 23 C -0.146 4.146 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.420 0.580 32 H 0.109 0.891 33 H 0.400 0.600 34 H -0.234 1.234 35 H -0.234 1.234 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.082 0.918 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -2.280 -1.512 4.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.143 4.143 6 C -0.121 4.121 7 H 0.123 0.877 8 C -0.185 4.185 9 C 0.013 3.987 10 H 0.124 0.876 11 N -0.862 5.862 12 S 2.808 3.192 13 O -0.921 6.921 14 O -0.941 6.941 15 C -0.755 4.755 16 C -0.175 4.175 17 C -0.191 4.191 18 O -0.354 6.354 19 Si 0.588 3.412 20 S 0.402 5.598 21 C -0.343 4.343 22 C -0.117 4.117 23 C -0.185 4.185 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.255 0.745 32 H 0.126 0.874 33 H 0.252 0.748 34 H -0.157 1.157 35 H -0.157 1.157 36 H 0.194 0.806 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.768 -1.256 -0.809 4.996 hybrid contribution -1.317 -1.529 -1.030 2.266 sum 3.451 -2.785 -1.838 4.800 Atomic orbital electron populations 1.23297 0.75981 1.03900 1.02699 1.86507 1.23763 1.33581 1.84094 1.23845 0.92339 0.81380 0.72384 1.90695 1.67241 1.36309 1.44804 1.21453 0.87560 0.99125 1.06134 1.22528 0.96201 0.93959 0.99370 0.87725 1.23567 0.98412 1.00108 0.96378 1.21668 0.98924 0.82310 0.95801 0.87626 1.55541 1.65281 1.21133 1.44264 1.01443 0.72373 0.71473 0.73933 1.93604 1.82984 1.85244 1.30251 1.93568 1.80093 1.49851 1.70541 1.29949 1.28942 0.98829 1.17803 1.23597 0.96728 0.97294 0.99887 1.24556 1.01399 0.95222 0.97876 1.86335 1.52964 1.36624 1.59498 0.94444 0.76026 0.87990 0.82690 1.84475 1.04957 1.04699 1.65647 1.25896 0.99256 0.99701 1.09410 1.19846 0.93883 0.97316 1.00653 1.23512 0.96123 0.98533 1.00322 0.91760 0.91801 0.87955 0.87277 0.87239 0.88614 0.89852 0.74473 0.87355 0.74848 1.15740 1.15737 0.80565 0.82682 0.89896 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.42 10.57 -39.25 -0.41 -0.83 16 3 C 0.46 0.59 7.96 36.01 0.29 0.88 16 4 O -0.50 -2.20 15.51 -18.75 -0.29 -2.49 16 5 C -0.11 0.25 5.65 -27.88 -0.16 0.09 16 6 C -0.10 0.19 2.97 -89.67 -0.27 -0.08 16 7 H 0.10 -0.06 7.63 -51.93 -0.40 -0.46 16 8 C -0.15 0.10 7.45 -25.77 -0.19 -0.09 16 9 C 0.12 -0.15 2.77 -67.11 -0.19 -0.34 16 10 H 0.11 -0.19 7.14 -51.93 -0.37 -0.56 16 11 N -1.10 -0.18 5.50 -4.19 -0.02 -0.20 16 12 S 2.72 9.97 4.15 -107.50 -0.45 9.52 16 13 O -0.93 -6.20 16.67 -64.92 -1.08 -7.28 16 14 O -0.95 -5.52 17.02 -62.67 -1.07 -6.58 16 15 C -0.66 -1.96 5.72 -41.21 -0.24 -2.20 16 16 C -0.05 -0.17 5.78 -36.00 -0.21 -0.38 16 17 C -0.08 -0.10 2.38 36.00 0.09 -0.01 16 18 O -0.54 -1.08 9.60 -60.53 -0.58 -1.66 16 19 Si 0.69 -0.69 31.11 -169.99 -5.29 -5.98 16 20 S 0.14 0.22 20.87 -107.50 -2.24 -2.03 16 21 C -0.21 -0.03 11.23 29.04 0.33 0.30 16 22 C -0.09 -0.06 9.21 -41.21 -0.38 -0.44 16 23 C -0.15 0.53 6.97 -25.92 -0.18 0.35 16 24 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.06 -0.02 8.13 -51.93 -0.42 -0.45 16 26 H 0.10 -0.29 8.14 -51.92 -0.42 -0.71 16 27 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 28 H 0.11 -0.44 7.86 -51.93 -0.41 -0.85 16 29 H 0.10 -0.20 7.91 -51.93 -0.41 -0.61 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.42 -0.56 8.77 -34.47 -0.30 -0.87 16 32 H 0.11 -0.02 7.96 -51.93 -0.41 -0.43 16 33 H 0.40 -1.40 8.62 45.56 0.39 -1.00 16 34 H -0.23 -0.44 7.11 56.52 0.40 -0.04 16 35 H -0.23 -0.07 7.11 56.52 0.40 0.33 16 36 H 0.18 -0.49 8.06 -52.48 -0.42 -0.91 16 37 H 0.16 -0.35 5.29 -52.49 -0.28 -0.63 16 38 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 39 H 0.10 -0.55 8.10 -51.93 -0.42 -0.97 16 LS Contribution 350.00 15.07 5.27 5.27 Total: 0.00 -12.70 350.00 -10.97 -23.67 By element: Atomic # 1 Polarization: -5.78 SS G_CDS: -4.76 Total: -10.54 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.04 Total: -0.87 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -0.02 Total: -0.20 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -3.44 Total: -18.85 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: -5.29 Total: -5.98 kcal Atomic # 16 Polarization: 10.19 SS G_CDS: -2.69 Total: 7.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -12.70 -10.97 -23.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.531 kcal (2) G-P(sol) polarization free energy of solvation -12.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds