Wall clock time and date at job start Mon Mar 8 2021 13:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99642 * 2 1 4 4 O 1.20824 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99889 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47599 * 179.97438 * 5 3 2 7 7 H 1.09001 * 112.84226 * 316.19625 * 6 5 3 8 8 C 1.54054 * 113.69625 * 87.45981 * 6 5 3 9 9 C 1.53788 * 86.98430 * 139.99532 * 8 6 5 10 10 H 1.08997 * 113.61606 * 219.98475 * 9 8 6 11 11 N 1.46496 * 113.61286 * 89.16022 * 9 8 6 12 12 S 1.65604 * 119.99832 * 118.06739 * 11 9 8 13 13 O 1.42103 * 106.40198 * 312.76857 * 12 11 9 14 14 O 1.42096 * 106.40645 * 179.84658 * 12 11 9 15 15 C 1.76202 * 107.21634 * 66.30341 * 12 11 9 16 16 C 1.33394 * 122.53669 * 165.16276 * 15 12 11 17 17 C 1.50696 * 125.20292 * 0.02604 * 16 15 12 18 18 O 1.42896 * 109.47459 * 38.63540 * 17 16 15 19 19 Si 1.86294 * 109.47173 * 158.63684 * 17 16 15 20 20 S 1.75889 * 109.59121 * 179.75659 * 16 15 12 21 21 C 1.75880 * 90.96904 * 0.22869 * 20 16 15 22 22 C 1.33388 * 109.60022 * 0.02562 * 21 20 16 23 23 C 1.53771 * 113.61795 * 184.99942 * 6 5 3 24 24 H 1.09007 * 109.47264 * 299.99640 * 1 2 3 25 25 H 1.08994 * 109.47275 * 60.00582 * 1 2 3 26 26 H 1.09009 * 109.46845 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47215 * 59.99010 * 5 3 2 28 28 H 1.09007 * 109.46996 * 299.99996 * 5 3 2 29 29 H 1.09003 * 113.61180 * 25.49220 * 8 6 5 30 30 H 1.08998 * 113.69717 * 254.50798 * 8 6 5 31 31 H 0.96994 * 120.00560 * 298.06607 * 11 9 8 32 32 H 1.09005 * 109.46864 * 278.63490 * 17 16 15 33 33 H 0.96699 * 114.00679 * 175.01007 * 18 17 16 34 34 H 1.48502 * 109.99949 * 299.99392 * 19 17 16 35 35 H 1.48497 * 110.00253 * 61.31435 * 19 17 16 36 36 H 1.08008 * 125.20184 * 180.02562 * 21 20 16 37 37 H 1.07999 * 122.54438 * 179.97438 * 22 21 20 38 38 H 1.08999 * 113.61674 * 105.38351 * 23 6 5 39 39 H 1.09000 * 113.61393 * 334.47733 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.4246 3.3533 -0.6964 8 6 4.1163 3.3539 1.4080 9 6 5.3814 4.0690 0.9048 10 1 6.1883 4.0957 1.6370 11 7 5.1154 5.3780 0.3031 12 16 5.7646 6.7453 0.9750 13 8 5.5146 6.6637 2.3715 14 8 5.3307 7.8329 0.1701 15 6 7.5124 6.6450 0.7759 16 6 8.3149 7.6977 0.9409 17 6 7.8613 9.0862 1.3113 18 8 6.8019 9.0024 2.2666 19 14 9.2886 10.0300 2.0481 20 16 9.9842 7.2154 0.6677 21 6 9.4828 5.5642 0.3281 22 6 8.1564 5.4689 0.4322 23 6 5.5207 2.9348 -0.1245 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.9557 0.7809 -0.8907 28 1 3.9564 0.7806 0.8892 29 1 4.3116 2.6185 2.1885 30 1 3.3016 4.0330 1.6592 31 1 4.5592 5.4439 -0.4887 32 1 7.5062 9.6025 0.4194 33 1 6.5114 9.8591 2.6081 34 1 9.7819 9.3364 3.2650 35 1 10.3845 10.1517 1.0535 36 1 10.1473 4.7515 0.0740 37 1 7.6256 4.5433 0.2653 38 1 5.8391 3.2759 -1.1096 39 1 6.0993 2.0851 0.2378 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16627172_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:41 Heat of formation + Delta-G solvation = -122.995209 kcal Electronic energy + Delta-G solvation = -26843.519149 eV Core-core repulsion = 22780.025022 eV Total energy + Delta-G solvation = -4063.494127 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63358 -40.28728 -39.58362 -38.21120 -37.75027 -37.49964 -36.85019 -34.47347 -32.03497 -31.20430 -28.36531 -27.60420 -26.63739 -24.81661 -24.26172 -21.92851 -21.79521 -20.88688 -19.98780 -19.02311 -18.61356 -18.55916 -18.21099 -17.73664 -17.61211 -17.46275 -17.13159 -16.41429 -16.06529 -15.61736 -15.48986 -15.25331 -15.06094 -14.74718 -14.54264 -14.21797 -14.18108 -13.92916 -13.83872 -13.34567 -13.22424 -13.18278 -13.09785 -12.91718 -12.87628 -12.81939 -12.65882 -12.16719 -11.92305 -11.90406 -11.82127 -11.69116 -11.35559 -11.16413 -10.91682 -10.52830 -10.19932 -9.84926 -5.26985 -0.77266 -0.61010 0.20932 0.59858 0.97386 1.10958 1.20337 1.48325 1.77671 1.81116 1.94245 2.66421 3.02530 3.43559 3.45958 3.53534 3.54988 3.76244 3.83315 3.92429 3.98020 4.12514 4.14708 4.26364 4.27235 4.27955 4.46279 4.51798 4.58491 4.66048 4.69431 4.76336 4.84950 4.88329 5.03782 5.06340 5.15883 5.17677 5.41376 5.55634 5.96519 6.57763 6.73717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.452 3.548 4 O -0.545 6.545 5 C -0.100 4.100 6 C -0.104 4.104 7 H 0.086 0.914 8 C -0.156 4.156 9 C 0.107 3.893 10 H 0.113 0.887 11 N -1.095 6.095 12 S 2.735 3.265 13 O -0.970 6.970 14 O -0.982 6.982 15 C -0.669 4.669 16 C -0.084 4.084 17 C -0.103 4.103 18 O -0.569 6.569 19 Si 0.783 3.217 20 S 0.128 5.872 21 C -0.198 4.198 22 C -0.098 4.098 23 C -0.125 4.125 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.426 0.574 32 H 0.117 0.883 33 H 0.418 0.582 34 H -0.276 1.276 35 H -0.248 1.248 36 H 0.210 0.790 37 H 0.184 0.816 38 H 0.095 0.905 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -4.075 -2.244 6.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.298 3.702 4 O -0.434 6.434 5 C -0.137 4.137 6 C -0.122 4.122 7 H 0.104 0.896 8 C -0.195 4.195 9 C 0.000 4.000 10 H 0.131 0.869 11 N -0.857 5.857 12 S 2.822 3.178 13 O -0.960 6.960 14 O -0.972 6.972 15 C -0.769 4.769 16 C -0.204 4.204 17 C -0.212 4.212 18 O -0.382 6.382 19 Si 0.682 3.318 20 S 0.391 5.609 21 C -0.333 4.333 22 C -0.126 4.126 23 C -0.163 4.163 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.263 0.737 32 H 0.134 0.866 33 H 0.272 0.728 34 H -0.202 1.202 35 H -0.173 1.173 36 H 0.227 0.773 37 H 0.201 0.799 38 H 0.113 0.887 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.290 -3.049 -1.556 7.161 hybrid contribution -1.851 -1.046 -0.788 2.267 sum 4.439 -4.095 -2.343 6.478 Atomic orbital electron populations 1.23458 0.75486 1.05387 1.02161 1.86513 1.24462 1.33623 1.83842 1.24690 0.93814 0.80755 0.70989 1.90681 1.68401 1.37524 1.46842 1.21612 0.84712 0.98990 1.08364 1.22480 0.97652 0.94117 0.97971 0.89583 1.23679 0.97744 1.00290 0.97792 1.21958 0.98900 0.82040 0.97139 0.86902 1.55254 1.65083 1.20989 1.44347 1.00678 0.72656 0.71536 0.72934 1.93551 1.83927 1.85975 1.32552 1.93511 1.80977 1.51866 1.70824 1.29926 1.28182 1.00132 1.18652 1.24013 0.97616 0.98305 1.00502 1.25000 1.02493 0.95144 0.98536 1.86300 1.53508 1.38551 1.59796 0.93369 0.73250 0.86166 0.79041 1.84475 1.04286 1.06415 1.65756 1.26310 0.99465 0.99355 1.08158 1.20157 0.94289 0.97539 1.00577 1.23506 0.94680 0.97981 1.00159 0.92422 0.92298 0.85472 0.84749 0.84882 0.86998 0.92971 0.73687 0.86585 0.72771 1.20169 1.17264 0.77330 0.79884 0.88694 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.80 10.57 -51.38 -0.54 -1.34 16 3 C 0.45 1.25 7.96 71.24 0.57 1.81 16 4 O -0.54 -5.64 15.51 21.97 0.34 -5.30 16 5 C -0.10 0.64 5.65 29.85 0.17 0.81 16 6 C -0.10 0.45 2.97 -10.18 -0.03 0.42 16 7 H 0.09 -0.04 7.63 -2.39 -0.02 -0.06 16 8 C -0.16 0.18 7.45 31.22 0.23 0.41 16 9 C 0.11 -0.33 2.77 45.52 0.13 -0.20 16 10 H 0.11 -0.51 7.14 -2.39 -0.02 -0.53 16 11 N -1.10 -1.19 5.50 -167.18 -0.92 -2.10 16 12 S 2.74 24.38 4.15 -56.49 -0.23 24.15 16 13 O -0.97 -15.09 16.67 -120.59 -2.01 -17.10 16 14 O -0.98 -13.50 17.02 -122.74 -2.09 -15.59 16 15 C -0.67 -4.37 5.72 21.22 0.12 -4.25 16 16 C -0.08 -0.60 5.78 24.59 0.14 -0.45 16 17 C -0.10 -0.39 2.38 71.23 0.17 -0.22 16 18 O -0.57 -3.31 9.60 -124.79 -1.20 -4.51 16 19 Si 0.78 -1.07 31.11 68.60 2.13 1.07 16 20 S 0.13 0.39 20.87 -56.49 -1.18 -0.79 16 21 C -0.20 0.26 11.23 66.72 0.75 1.01 16 22 C -0.10 -0.02 9.21 21.22 0.20 0.18 16 23 C -0.12 1.22 6.97 31.12 0.22 1.43 16 24 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 25 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 26 H 0.13 -0.79 8.14 -2.38 -0.02 -0.80 16 27 H 0.13 -1.49 8.14 -2.39 -0.02 -1.51 16 28 H 0.13 -1.44 7.86 -2.38 -0.02 -1.46 16 29 H 0.11 -0.54 7.91 -2.39 -0.02 -0.56 16 30 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.43 -0.67 8.77 -96.75 -0.85 -1.52 16 32 H 0.12 0.13 7.96 -2.38 -0.02 0.11 16 33 H 0.42 -2.19 8.62 -74.06 -0.64 -2.83 16 34 H -0.28 -1.45 7.11 99.48 0.71 -0.74 16 35 H -0.25 -0.18 7.11 99.48 0.71 0.53 16 36 H 0.21 -1.80 8.06 -2.91 -0.02 -1.83 16 37 H 0.18 -1.23 5.29 -2.91 -0.02 -1.25 16 38 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 39 H 0.13 -2.01 8.10 -2.39 -0.02 -2.03 16 Total: 0.00 -32.51 350.00 -2.18 -34.69 By element: Atomic # 1 Polarization: -14.97 SS G_CDS: -0.34 Total: -15.31 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 3.85 Total: 2.13 kcal Atomic # 7 Polarization: -1.19 SS G_CDS: -0.92 Total: -2.10 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -5.50 Total: -43.84 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.13 Total: 1.07 kcal Atomic # 16 Polarization: 24.78 SS G_CDS: -1.41 Total: 23.36 kcal Total: -32.51 -2.18 -34.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.304 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds