Wall clock time and date at job start Mon Mar 8 2021 13:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00120 * 2 1 4 4 O 1.20826 * 119.99858 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00148 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47340 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.90458 * 316.25158 * 6 5 3 8 8 C 1.53784 * 113.61546 * 87.50191 * 6 5 3 9 9 C 1.53780 * 87.08175 * 139.98217 * 8 6 5 10 10 H 1.08991 * 113.69180 * 220.00758 * 9 8 6 11 11 N 1.46506 * 113.61177 * 89.11647 * 9 8 6 12 12 S 1.65597 * 119.99791 * 117.50638 * 11 9 8 13 13 O 1.42102 * 106.40060 * 178.54054 * 12 11 9 14 14 O 1.42101 * 106.40207 * 311.45359 * 12 11 9 15 15 C 1.76196 * 107.22133 * 64.99502 * 12 11 9 16 16 C 1.33390 * 122.54330 * 269.70860 * 15 12 11 17 17 S 1.75881 * 109.59624 * 179.90469 * 16 15 12 18 18 C 1.75886 * 90.96874 * 0.30318 * 17 16 15 19 19 C 1.50706 * 125.20445 * 179.86636 * 18 17 16 20 20 O 1.42897 * 109.47281 * 119.95381 * 19 18 17 21 21 Si 1.86303 * 109.46606 * 359.95674 * 19 18 17 22 22 C 1.33387 * 109.59561 * 359.82773 * 18 17 16 23 23 C 1.53779 * 87.08220 * 334.56840 * 9 8 6 24 24 H 1.08998 * 109.47110 * 59.99604 * 1 2 3 25 25 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46827 * 300.00289 * 1 2 3 27 27 H 1.09002 * 109.47366 * 59.99917 * 5 3 2 28 28 H 1.09000 * 109.47096 * 299.99883 * 5 3 2 29 29 H 1.09005 * 113.61483 * 25.43225 * 8 6 5 30 30 H 1.09008 * 113.61258 * 254.53173 * 8 6 5 31 31 H 0.96995 * 120.00050 * 297.22723 * 11 9 8 32 32 H 1.07999 * 125.19662 * 0.02705 * 16 15 12 33 33 H 1.09001 * 109.46941 * 239.96136 * 19 18 17 34 34 H 0.96701 * 113.99878 * 179.97438 * 20 19 18 35 35 H 1.48504 * 110.00146 * 60.00426 * 21 19 18 36 36 H 1.48507 * 109.99685 * 181.31882 * 21 19 18 37 37 H 1.07997 * 122.54344 * 179.97438 * 22 18 17 38 38 H 1.08997 * 113.61665 * 139.97920 * 23 9 8 39 39 H 1.09004 * 113.61578 * 270.79975 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4247 3.3550 -0.6935 8 6 4.1166 3.3493 1.4082 9 6 5.3819 4.0665 0.9088 10 1 6.1890 4.0914 1.6409 11 7 5.1160 5.3771 0.3104 12 16 5.7519 6.7442 0.9950 13 8 5.3467 7.8303 0.1731 14 8 5.4610 6.6700 2.3839 15 6 7.5043 6.6351 0.8471 16 6 8.2699 6.0737 1.7842 17 16 9.9561 6.1462 1.2896 18 6 9.5144 6.9671 -0.2019 19 6 10.4825 7.4162 -1.2660 20 8 10.1671 6.7694 -2.5006 21 14 12.2175 6.9683 -0.7559 22 6 8.1914 7.1306 -0.2476 23 6 5.5209 2.9349 -0.1231 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.9558 0.7809 -0.8908 28 1 3.9565 0.7806 0.8892 29 1 4.3113 2.6119 2.1871 30 1 3.3010 4.0272 1.6601 31 1 4.5709 5.4435 -0.4891 32 1 7.9091 5.6392 2.7047 33 1 10.4083 8.4963 -1.3922 34 1 10.7509 7.0123 -3.2322 35 1 12.3318 5.4981 -0.5805 36 1 13.1848 7.4342 -1.7820 37 1 7.6940 7.6135 -1.0757 38 1 5.8391 3.2782 -1.1075 39 1 6.1008 2.0848 0.2365 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16627172_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:45 Heat of formation + Delta-G solvation = -122.892788 kcal Electronic energy + Delta-G solvation = -26136.121055 eV Core-core repulsion = 22072.631369 eV Total energy + Delta-G solvation = -4063.489686 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.60600 -40.32815 -39.43188 -38.16099 -37.72071 -37.40885 -36.80584 -34.48068 -32.00690 -31.29610 -28.41395 -27.25115 -26.79367 -24.87715 -24.68320 -21.93240 -21.28743 -20.80325 -19.99717 -18.99349 -18.66222 -18.56565 -18.47740 -17.74928 -17.61284 -17.46696 -17.08356 -16.29132 -15.99908 -15.72906 -15.55584 -15.43374 -14.85834 -14.42815 -14.33411 -14.19253 -14.12393 -13.99604 -13.96918 -13.46534 -13.20604 -13.09618 -13.03129 -12.97094 -12.91263 -12.89255 -12.62465 -12.44788 -12.07652 -11.78408 -11.74303 -11.62140 -11.34674 -11.34010 -10.76044 -10.57390 -10.18005 -9.82030 -5.21976 -0.73117 -0.46626 0.27983 0.56920 0.98957 1.11384 1.25367 1.42107 1.74722 1.75034 2.02510 2.75399 3.08771 3.30106 3.36771 3.37712 3.58112 3.63931 3.68820 3.81919 3.85603 3.96019 4.16424 4.18037 4.23748 4.27071 4.30806 4.31561 4.42193 4.59860 4.60927 4.65871 4.67486 4.86284 4.91519 5.01257 5.05885 5.08123 5.34940 5.46043 5.87466 6.23443 6.78415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.504 6.504 5 C -0.105 4.105 6 C -0.103 4.103 7 H 0.104 0.896 8 C -0.146 4.146 9 C 0.128 3.872 10 H 0.102 0.898 11 N -1.095 6.095 12 S 2.710 3.290 13 O -0.951 6.951 14 O -0.949 6.949 15 C -0.684 4.684 16 C -0.090 4.090 17 S 0.168 5.832 18 C -0.183 4.183 19 C -0.036 4.036 20 O -0.532 6.532 21 Si 0.649 3.351 22 C -0.043 4.043 23 C -0.141 4.141 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.422 0.578 32 H 0.187 0.813 33 H 0.090 0.910 34 H 0.384 0.616 35 H -0.235 1.235 36 H -0.237 1.237 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -4.038 -0.186 6.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.391 6.391 5 C -0.143 4.143 6 C -0.122 4.122 7 H 0.122 0.878 8 C -0.185 4.185 9 C 0.020 3.980 10 H 0.120 0.880 11 N -0.854 5.854 12 S 2.796 3.204 13 O -0.941 6.941 14 O -0.939 6.939 15 C -0.784 4.784 16 C -0.229 4.229 17 S 0.432 5.568 18 C -0.300 4.300 19 C -0.148 4.148 20 O -0.340 6.340 21 Si 0.547 3.453 22 C -0.071 4.071 23 C -0.180 4.180 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.257 0.743 32 H 0.204 0.796 33 H 0.107 0.893 34 H 0.233 0.767 35 H -0.159 1.159 36 H -0.160 1.160 37 H 0.173 0.827 38 H 0.100 0.900 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.758 -4.254 1.150 7.251 hybrid contribution -1.303 0.164 -2.395 2.732 sum 4.455 -4.090 -1.245 6.175 Atomic orbital electron populations 1.23295 0.75983 1.03899 1.02694 1.86508 1.23760 1.33592 1.84090 1.23852 0.92342 0.81374 0.72367 1.90693 1.67246 1.36308 1.44827 1.21453 0.87526 0.99157 1.06119 1.22502 0.96395 0.93954 0.99325 0.87767 1.23535 0.98437 1.00128 0.96433 1.21554 0.98455 0.82181 0.95804 0.88021 1.55354 1.65955 1.20678 1.43434 1.01626 0.72789 0.72204 0.73740 1.93617 1.81007 1.50125 1.69335 1.93620 1.82843 1.85964 1.31458 1.30022 1.28193 1.16624 1.03542 1.25927 0.96919 0.98502 1.01590 1.84321 1.06420 1.53255 1.12840 1.23777 0.97587 1.08695 0.99952 1.24038 1.06508 0.99324 0.84909 1.86588 1.58205 1.70394 1.18774 0.95269 0.74930 0.84176 0.90929 1.19564 0.92512 0.98107 0.96947 1.23441 0.95716 0.98466 1.00392 0.91805 0.87952 0.91767 0.87300 0.87267 0.88651 0.89884 0.74291 0.79617 0.89273 0.76703 1.15888 1.15975 0.82670 0.90018 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.42 10.57 -39.26 -0.41 -0.83 16 3 C 0.46 0.58 7.96 36.01 0.29 0.86 16 4 O -0.50 -2.17 15.51 -18.75 -0.29 -2.46 16 5 C -0.11 0.25 5.65 -27.89 -0.16 0.09 16 6 C -0.10 0.19 2.97 -89.81 -0.27 -0.07 16 7 H 0.10 -0.06 7.64 -51.93 -0.40 -0.46 16 8 C -0.15 0.19 7.43 -25.92 -0.19 0.00 16 9 C 0.13 -0.26 4.44 -67.12 -0.30 -0.55 16 10 H 0.10 -0.35 7.95 -51.93 -0.41 -0.76 16 11 N -1.10 0.96 5.73 -4.20 -0.02 0.93 16 12 S 2.71 4.53 5.74 -107.50 -0.62 3.91 16 13 O -0.95 -4.58 17.63 -57.17 -1.01 -5.59 16 14 O -0.95 -3.87 17.39 -57.17 -0.99 -4.87 16 15 C -0.68 -0.53 5.86 -41.21 -0.24 -0.77 16 16 C -0.09 0.06 10.60 29.04 0.31 0.37 16 17 S 0.17 -0.13 20.58 -107.50 -2.21 -2.35 16 18 C -0.18 -0.12 5.76 -36.00 -0.21 -0.33 16 19 C -0.04 0.03 2.95 36.01 0.11 0.13 16 20 O -0.53 -0.05 12.83 -35.23 -0.45 -0.50 16 21 Si 0.65 -1.02 30.97 -169.99 -5.26 -6.29 16 22 C -0.04 -0.06 9.56 -41.21 -0.39 -0.45 16 23 C -0.14 0.47 7.43 -25.92 -0.19 0.28 16 24 H 0.06 -0.02 8.13 -51.93 -0.42 -0.45 16 25 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 26 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 27 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 28 H 0.11 -0.44 7.84 -51.93 -0.41 -0.85 16 29 H 0.10 -0.26 7.90 -51.93 -0.41 -0.67 16 30 H 0.08 0.06 8.14 -51.92 -0.42 -0.37 16 31 H 0.42 -0.85 8.79 -34.47 -0.30 -1.15 16 32 H 0.19 -0.56 8.00 -52.49 -0.42 -0.98 16 33 H 0.09 -0.21 7.96 -51.93 -0.41 -0.62 16 34 H 0.38 -1.53 8.74 45.56 0.40 -1.13 16 35 H -0.24 -0.25 7.11 56.52 0.40 0.15 16 36 H -0.24 0.03 7.11 56.52 0.40 0.43 16 37 H 0.16 0.20 7.96 -52.49 -0.42 -0.22 16 38 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 39 H 0.10 -0.48 8.10 -51.93 -0.42 -0.90 16 LS Contribution 362.04 15.07 5.46 5.46 Total: 0.00 -11.71 362.04 -10.94 -22.65 By element: Atomic # 1 Polarization: -5.73 SS G_CDS: -4.94 Total: -10.66 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.18 Total: 0.59 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -0.02 Total: 0.93 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -3.16 Total: -14.25 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.26 Total: -6.29 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.83 Total: 1.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -11.71 -10.94 -22.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.242 kcal (2) G-P(sol) polarization free energy of solvation -11.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds