Wall clock time and date at job start Mon Mar 8 2021 13:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00120 * 2 1 4 4 O 1.20826 * 119.99858 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00148 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47340 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.90458 * 316.25158 * 6 5 3 8 8 C 1.53784 * 113.61546 * 87.50191 * 6 5 3 9 9 C 1.53780 * 87.08175 * 139.98217 * 8 6 5 10 10 H 1.08991 * 113.69180 * 220.00758 * 9 8 6 11 11 N 1.46506 * 113.61177 * 89.11647 * 9 8 6 12 12 S 1.65597 * 119.99791 * 117.50638 * 11 9 8 13 13 O 1.42102 * 106.40060 * 178.54054 * 12 11 9 14 14 O 1.42101 * 106.40207 * 311.45359 * 12 11 9 15 15 C 1.76196 * 107.22133 * 64.99502 * 12 11 9 16 16 C 1.33390 * 122.54330 * 269.70860 * 15 12 11 17 17 S 1.75881 * 109.59624 * 179.90469 * 16 15 12 18 18 C 1.75886 * 90.96874 * 0.30318 * 17 16 15 19 19 C 1.50706 * 125.20445 * 179.86636 * 18 17 16 20 20 O 1.42897 * 109.47281 * 119.95381 * 19 18 17 21 21 Si 1.86303 * 109.46606 * 359.95674 * 19 18 17 22 22 C 1.33387 * 109.59561 * 359.82773 * 18 17 16 23 23 C 1.53779 * 87.08220 * 334.56840 * 9 8 6 24 24 H 1.08998 * 109.47110 * 59.99604 * 1 2 3 25 25 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46827 * 300.00289 * 1 2 3 27 27 H 1.09002 * 109.47366 * 59.99917 * 5 3 2 28 28 H 1.09000 * 109.47096 * 299.99883 * 5 3 2 29 29 H 1.09005 * 113.61483 * 25.43225 * 8 6 5 30 30 H 1.09008 * 113.61258 * 254.53173 * 8 6 5 31 31 H 0.96995 * 120.00050 * 297.22723 * 11 9 8 32 32 H 1.07999 * 125.19662 * 0.02705 * 16 15 12 33 33 H 1.09001 * 109.46941 * 239.96136 * 19 18 17 34 34 H 0.96701 * 113.99878 * 179.97438 * 20 19 18 35 35 H 1.48504 * 110.00146 * 60.00426 * 21 19 18 36 36 H 1.48507 * 109.99685 * 181.31882 * 21 19 18 37 37 H 1.07997 * 122.54344 * 179.97438 * 22 18 17 38 38 H 1.08997 * 113.61665 * 139.97920 * 23 9 8 39 39 H 1.09004 * 113.61578 * 270.79975 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4247 3.3550 -0.6935 8 6 4.1166 3.3493 1.4082 9 6 5.3819 4.0665 0.9088 10 1 6.1890 4.0914 1.6409 11 7 5.1160 5.3771 0.3104 12 16 5.7519 6.7442 0.9950 13 8 5.3467 7.8303 0.1731 14 8 5.4610 6.6700 2.3839 15 6 7.5043 6.6351 0.8471 16 6 8.2699 6.0737 1.7842 17 16 9.9561 6.1462 1.2896 18 6 9.5144 6.9671 -0.2019 19 6 10.4825 7.4162 -1.2660 20 8 10.1671 6.7694 -2.5006 21 14 12.2175 6.9683 -0.7559 22 6 8.1914 7.1306 -0.2476 23 6 5.5209 2.9349 -0.1231 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.9558 0.7809 -0.8908 28 1 3.9565 0.7806 0.8892 29 1 4.3113 2.6119 2.1871 30 1 3.3010 4.0272 1.6601 31 1 4.5709 5.4435 -0.4891 32 1 7.9091 5.6392 2.7047 33 1 10.4083 8.4963 -1.3922 34 1 10.7509 7.0123 -3.2322 35 1 12.3318 5.4981 -0.5805 36 1 13.1848 7.4342 -1.7820 37 1 7.6940 7.6135 -1.0757 38 1 5.8391 3.2782 -1.1075 39 1 6.1008 2.0848 0.2365 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16627172_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:45 Heat of formation + Delta-G solvation = -127.433801 kcal Electronic energy + Delta-G solvation = -26136.317968 eV Core-core repulsion = 22072.631369 eV Total energy + Delta-G solvation = -4063.686599 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63375 -40.22692 -39.41208 -38.39843 -37.67359 -37.51264 -37.05115 -34.42338 -31.97871 -31.20816 -28.36438 -27.21238 -26.59709 -24.86905 -24.59564 -21.92985 -21.31082 -20.72655 -19.96234 -18.96175 -18.72160 -18.58559 -18.49673 -17.78283 -17.64231 -17.50560 -17.04179 -16.24070 -16.05428 -15.71544 -15.43185 -15.37365 -14.80347 -14.42903 -14.29236 -14.20051 -14.12281 -13.95832 -13.90311 -13.36070 -13.35642 -13.26808 -13.21413 -12.92638 -12.87174 -12.83453 -12.67850 -12.43342 -11.92858 -11.82635 -11.73225 -11.62885 -11.34605 -11.16429 -10.68392 -10.48617 -10.14520 -9.78534 -5.09459 -0.81152 -0.46384 0.32629 0.59989 0.97546 1.17814 1.19444 1.51594 1.80307 1.83274 2.00956 2.65055 3.17000 3.33298 3.49212 3.55259 3.68344 3.77380 3.85714 3.92585 3.94767 4.08788 4.22764 4.26227 4.27518 4.39633 4.45916 4.51099 4.64947 4.66237 4.69079 4.85838 4.88022 4.91767 5.04352 5.06464 5.16901 5.18962 5.40846 5.56357 5.96421 6.49924 6.72970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.453 3.547 4 O -0.544 6.544 5 C -0.100 4.100 6 C -0.106 4.106 7 H 0.084 0.916 8 C -0.152 4.152 9 C 0.117 3.883 10 H 0.120 0.880 11 N -1.091 6.091 12 S 2.726 3.274 13 O -0.990 6.990 14 O -0.977 6.977 15 C -0.690 4.690 16 C -0.088 4.088 17 S 0.199 5.801 18 C -0.197 4.197 19 C -0.048 4.048 20 O -0.552 6.552 21 Si 0.717 3.283 22 C -0.060 4.060 23 C -0.125 4.125 24 H 0.058 0.942 25 H 0.127 0.873 26 H 0.058 0.942 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.425 0.575 32 H 0.210 0.790 33 H 0.105 0.895 34 H 0.399 0.601 35 H -0.270 1.270 36 H -0.256 1.256 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.351 -5.412 0.212 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.298 3.702 4 O -0.434 6.434 5 C -0.137 4.137 6 C -0.125 4.125 7 H 0.102 0.898 8 C -0.192 4.192 9 C 0.009 3.991 10 H 0.137 0.863 11 N -0.851 5.851 12 S 2.815 3.185 13 O -0.980 6.980 14 O -0.967 6.967 15 C -0.792 4.792 16 C -0.227 4.227 17 S 0.463 5.537 18 C -0.315 4.315 19 C -0.158 4.158 20 O -0.363 6.363 21 Si 0.618 3.382 22 C -0.089 4.089 23 C -0.164 4.164 24 H 0.076 0.924 25 H 0.145 0.855 26 H 0.077 0.923 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.262 0.738 32 H 0.227 0.773 33 H 0.123 0.877 34 H 0.251 0.749 35 H -0.196 1.196 36 H -0.180 1.180 37 H 0.165 0.835 38 H 0.100 0.900 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.419 -5.622 1.537 9.434 hybrid contribution -1.819 0.530 -2.539 3.168 sum 5.600 -5.092 -1.002 7.635 Atomic orbital electron populations 1.23460 0.75446 1.05395 1.02181 1.86514 1.24496 1.33620 1.83841 1.24654 0.93737 0.80770 0.71004 1.90679 1.68368 1.37490 1.46817 1.21604 0.84799 0.99080 1.08204 1.22457 0.97442 0.94086 0.98472 0.89789 1.23626 0.97862 1.00312 0.97387 1.21838 0.98692 0.81736 0.96819 0.86256 1.55149 1.65822 1.20652 1.43495 1.00792 0.73027 0.71943 0.72736 1.93558 1.82072 1.52383 1.69998 1.93578 1.83649 1.86470 1.32970 1.29723 1.27165 1.18092 1.04211 1.26289 0.97110 0.97420 1.01852 1.84211 1.05730 1.52221 1.11545 1.24081 0.97680 1.08709 1.01030 1.24303 1.06740 1.00286 0.84509 1.86542 1.59258 1.70831 1.19635 0.94486 0.72972 0.81132 0.89590 1.19610 0.93090 0.98947 0.97215 1.23419 0.94532 0.98421 1.00036 0.92352 0.85470 0.92324 0.85198 0.84807 0.86796 0.92677 0.73818 0.77335 0.87742 0.74920 1.19598 1.17994 0.83480 0.89970 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.87 10.57 -51.41 -0.54 -1.42 16 3 C 0.45 1.35 7.96 71.24 0.57 1.92 16 4 O -0.54 -5.64 15.51 21.97 0.34 -5.30 16 5 C -0.10 0.57 5.65 29.85 0.17 0.74 16 6 C -0.11 0.41 2.97 -10.27 -0.03 0.38 16 7 H 0.08 0.02 7.64 -2.39 -0.02 0.01 16 8 C -0.15 0.37 7.43 31.12 0.23 0.60 16 9 C 0.12 -0.50 4.44 45.52 0.20 -0.30 16 10 H 0.12 -0.96 7.95 -2.39 -0.02 -0.98 16 11 N -1.09 0.76 5.73 -167.20 -0.96 -0.20 16 12 S 2.73 12.78 5.74 -56.49 -0.32 12.45 16 13 O -0.99 -11.76 17.63 -128.00 -2.26 -14.02 16 14 O -0.98 -9.06 17.39 -128.00 -2.23 -11.29 16 15 C -0.69 -1.28 5.86 21.22 0.12 -1.15 16 16 C -0.09 0.19 10.60 66.72 0.71 0.89 16 17 S 0.20 -0.53 20.58 -56.49 -1.16 -1.69 16 18 C -0.20 -0.23 5.76 24.59 0.14 -0.09 16 19 C -0.05 0.09 2.95 71.24 0.21 0.30 16 20 O -0.55 -0.08 12.83 -148.98 -1.91 -1.99 16 21 Si 0.72 -2.68 30.97 68.60 2.12 -0.55 16 22 C -0.06 -0.21 9.56 21.22 0.20 0.00 16 23 C -0.13 1.01 7.43 31.12 0.23 1.24 16 24 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 25 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 27 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 28 H 0.13 -1.40 7.84 -2.39 -0.02 -1.42 16 29 H 0.11 -0.74 7.90 -2.38 -0.02 -0.76 16 30 H 0.05 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.43 -0.97 8.79 -96.75 -0.85 -1.82 16 32 H 0.21 -1.58 8.00 -2.91 -0.02 -1.60 16 33 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 34 H 0.40 -3.24 8.74 -74.06 -0.65 -3.89 16 35 H -0.27 -0.54 7.11 99.48 0.71 0.16 16 36 H -0.26 0.19 7.11 99.48 0.71 0.90 16 37 H 0.15 0.63 7.96 -2.91 -0.02 0.60 16 38 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.13 -1.60 8.10 -2.39 -0.02 -1.62 16 Total: 0.00 -28.49 362.04 -3.33 -31.82 By element: Atomic # 1 Polarization: -13.16 SS G_CDS: -0.36 Total: -13.52 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 3.95 Total: 5.70 kcal Atomic # 7 Polarization: 0.76 SS G_CDS: -0.96 Total: -0.20 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -6.60 Total: -34.01 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.12 Total: -0.55 kcal Atomic # 16 Polarization: 12.25 SS G_CDS: -1.49 Total: 10.77 kcal Total: -28.49 -3.33 -31.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.618 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds