Wall clock time and date at job start Mon Mar 8 2021 13:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 117.00075 * 2 1 4 4 O 1.20824 * 119.99736 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00323 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47362 * 180.02562 * 5 3 2 7 7 H 1.08996 * 112.85077 * 45.32425 * 6 5 3 8 8 C 1.53784 * 113.61508 * 176.52967 * 6 5 3 9 9 C 1.53779 * 87.07847 * 140.06015 * 8 6 5 10 10 H 1.09005 * 113.61345 * 219.92806 * 9 8 6 11 11 N 1.46509 * 113.61448 * 89.11857 * 9 8 6 12 12 S 1.65591 * 120.00372 * 144.99682 * 11 9 8 13 13 O 1.42092 * 106.40301 * 178.53781 * 12 11 9 14 14 O 1.42100 * 106.40328 * 311.46141 * 12 11 9 15 15 C 1.76196 * 107.21920 * 64.99798 * 12 11 9 16 16 C 1.33386 * 122.54200 * 93.18652 * 15 12 11 17 17 C 1.50701 * 125.20085 * 0.02562 * 16 15 12 18 18 S 1.75889 * 109.59838 * 179.90584 * 16 15 12 19 19 C 1.75887 * 90.96747 * 0.30407 * 18 16 15 20 20 C 1.50698 * 125.20303 * 179.87070 * 19 18 16 21 21 C 1.33390 * 109.59480 * 359.82477 * 19 18 16 22 22 C 1.50696 * 122.54047 * 180.02562 * 21 19 18 23 23 O 1.42902 * 109.47315 * 311.21587 * 22 21 19 24 24 Si 1.86309 * 109.47016 * 71.21331 * 22 21 19 25 25 C 1.53774 * 87.08458 * 334.56773 * 9 8 6 26 26 H 1.08994 * 109.46870 * 299.99634 * 1 2 3 27 27 H 1.08995 * 109.47377 * 60.00114 * 1 2 3 28 28 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47324 * 59.99546 * 5 3 2 30 30 H 1.09004 * 109.47192 * 299.99886 * 5 3 2 31 31 H 1.08993 * 113.61335 * 254.61014 * 8 6 5 32 32 H 1.09002 * 113.61182 * 25.51296 * 8 6 5 33 33 H 0.96997 * 119.99541 * 324.99598 * 11 9 8 34 34 H 1.09008 * 109.47182 * 84.16529 * 17 16 15 35 35 H 1.09005 * 109.47246 * 204.16369 * 17 16 15 36 36 H 1.08997 * 109.47458 * 324.16709 * 17 16 15 37 37 H 1.09002 * 109.46592 * 273.10226 * 20 19 18 38 38 H 1.09002 * 109.47224 * 33.09779 * 20 19 18 39 39 H 1.09000 * 109.47477 * 153.10309 * 20 19 18 40 40 H 1.09005 * 109.47204 * 191.20889 * 22 21 19 41 41 H 0.96696 * 114.00166 * 67.13082 * 23 22 21 42 42 H 1.48491 * 110.00192 * 186.15890 * 24 22 21 43 43 H 1.48503 * 109.99852 * 307.48097 * 24 22 21 44 44 H 1.09003 * 113.61240 * 270.87968 * 25 9 8 45 45 H 1.09003 * 113.61742 * 139.98401 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 0.0002 7 1 3.4432 3.3478 0.7151 8 6 5.5235 2.9341 0.0850 9 6 5.3571 4.0762 -0.9313 10 1 6.1446 4.1088 -1.6843 11 7 5.1073 5.3805 -0.3126 12 16 5.7247 6.7548 -0.9998 13 8 5.2838 7.8392 -0.1943 14 8 7.0956 6.4902 -1.2643 15 6 4.9443 6.9500 -2.5674 16 6 3.8456 7.6876 -2.7350 17 6 3.1302 8.4411 -1.6435 18 16 3.3615 7.6491 -4.4256 19 6 4.7133 6.5950 -4.8196 20 6 5.0244 6.0577 -6.1927 21 6 5.4215 6.3448 -3.7173 22 6 6.6485 5.4699 -3.7233 23 8 6.3607 4.2505 -4.4107 24 14 8.0396 6.3571 -4.5886 25 6 4.0790 3.3638 -1.4042 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7810 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 5.8678 3.2674 1.0639 32 1 6.0923 2.0873 -0.2992 33 1 4.5803 5.4390 0.4996 34 1 3.6078 9.4100 -1.4977 35 1 2.0880 8.5887 -1.9268 36 1 3.1773 7.8697 -0.7165 37 1 4.4697 5.1335 -6.3554 38 1 4.7352 6.7921 -6.9444 39 1 6.0931 5.8586 -6.2715 40 1 6.9417 5.2481 -2.6971 41 1 6.1987 4.3616 -5.3575 42 1 9.2075 5.4516 -4.7330 43 1 7.5907 6.8242 -5.9249 44 1 4.2529 2.6346 -2.1954 45 1 3.2570 4.0441 -1.6274 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16627172_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:49 Heat of formation + Delta-G solvation = -121.134708 kcal Electronic energy + Delta-G solvation = -32143.541491 eV Core-core repulsion = 27769.052803 eV Total energy + Delta-G solvation = -4374.488688 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.094 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.60827 -40.53993 -40.17624 -38.45242 -37.41627 -37.31479 -36.89561 -34.48442 -34.10855 -31.28951 -31.11847 -28.43215 -28.05364 -26.75998 -25.96059 -24.65836 -23.19198 -21.93304 -21.11689 -20.63218 -19.90201 -19.11018 -18.53982 -18.46992 -18.06426 -17.63174 -17.46764 -17.18381 -16.93728 -16.20077 -16.03581 -15.80156 -15.45530 -15.43327 -15.25878 -14.84582 -14.67605 -14.47233 -14.24981 -14.13386 -14.04323 -13.97114 -13.57068 -13.47982 -13.40902 -13.20986 -13.15891 -13.06596 -12.97490 -12.91533 -12.73629 -12.59752 -12.26307 -12.05393 -11.79228 -11.74991 -11.62002 -11.44099 -11.33345 -11.15816 -10.82839 -10.54961 -9.97690 -9.36460 -4.83700 -0.73304 -0.39941 0.38885 0.72644 0.84777 1.24680 1.39408 1.61335 1.74420 1.94095 2.04855 2.68334 3.20917 3.31259 3.38578 3.41538 3.46820 3.63457 3.67422 3.73589 3.87575 3.94422 3.96632 4.09388 4.15986 4.18681 4.22690 4.30352 4.31633 4.32338 4.43415 4.48659 4.50590 4.59432 4.59555 4.69498 4.71570 4.73463 4.91612 4.95403 5.04325 5.05797 5.08814 5.22136 5.38671 5.46429 5.87508 6.30630 6.77614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.505 6.505 5 C -0.106 4.106 6 C -0.103 4.103 7 H 0.102 0.898 8 C -0.136 4.136 9 C 0.119 3.881 10 H 0.114 0.886 11 N -1.096 6.096 12 S 2.707 3.293 13 O -0.950 6.950 14 O -0.945 6.945 15 C -0.684 4.684 16 C -0.043 4.043 17 C -0.111 4.111 18 S 0.160 5.840 19 C -0.194 4.194 20 C -0.099 4.099 21 C -0.057 4.057 22 C -0.089 4.089 23 O -0.526 6.526 24 Si 0.687 3.313 25 C -0.143 4.143 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.420 0.580 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.368 0.632 42 H -0.243 1.243 43 H -0.245 1.245 44 H 0.095 0.905 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -2.356 -0.937 2.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.392 6.392 5 C -0.143 4.143 6 C -0.121 4.121 7 H 0.121 0.879 8 C -0.175 4.175 9 C 0.011 3.989 10 H 0.131 0.869 11 N -0.855 5.855 12 S 2.795 3.205 13 O -0.940 6.940 14 O -0.935 6.935 15 C -0.784 4.784 16 C -0.164 4.164 17 C -0.169 4.169 18 S 0.426 5.574 19 C -0.311 4.311 20 C -0.157 4.157 21 C -0.067 4.067 22 C -0.200 4.200 23 O -0.334 6.334 24 Si 0.586 3.414 25 C -0.183 4.183 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.162 0.838 41 H 0.218 0.782 42 H -0.167 1.167 43 H -0.170 1.170 44 H 0.113 0.887 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.658 -1.089 -1.742 2.640 hybrid contribution -0.801 -1.341 -0.188 1.573 sum -2.459 -2.430 -1.930 3.960 Atomic orbital electron populations 1.23284 0.76057 1.03890 1.02621 1.86515 1.23700 1.33623 1.84080 1.23874 0.92355 0.81337 0.72263 1.90679 1.67272 1.36326 1.44958 1.21464 0.87417 0.99270 1.06169 1.22503 0.96499 0.93793 0.99337 0.87936 1.23379 0.95455 0.98304 1.00381 1.21804 0.98653 0.82160 0.96245 0.86872 1.55334 1.71245 1.20196 1.38688 1.01583 0.73839 0.72269 0.72819 1.93616 1.82293 1.51066 1.67007 1.93503 1.30647 1.84365 1.84985 1.29424 1.11893 1.14856 1.22185 1.24574 0.95577 0.96824 0.99458 1.20908 0.99869 1.01298 0.94828 1.84376 1.26966 1.45239 1.00788 1.24164 1.01372 1.06124 0.99486 1.20661 1.02286 1.01979 0.90768 1.18479 0.98336 0.99307 0.90628 1.25407 1.00139 0.89210 1.05227 1.86639 1.92282 1.29065 1.25372 0.93683 0.78563 0.88449 0.80700 1.23489 0.98112 1.00172 0.96494 0.91817 0.91851 0.87963 0.87272 0.87244 0.89919 0.88113 0.74460 0.87892 0.90110 0.88559 0.89630 0.90196 0.90524 0.83768 0.78186 1.16684 1.17027 0.88683 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.44 10.57 -39.27 -0.41 -0.85 16 3 C 0.46 0.59 7.96 36.00 0.29 0.88 16 4 O -0.51 -2.06 15.54 -18.75 -0.29 -2.35 16 5 C -0.11 0.21 5.64 -27.89 -0.16 0.05 16 6 C -0.10 0.17 2.93 -89.81 -0.26 -0.10 16 7 H 0.10 -0.08 7.70 -51.93 -0.40 -0.48 16 8 C -0.14 0.33 7.43 -25.92 -0.19 0.14 16 9 C 0.12 -0.11 4.51 -67.12 -0.30 -0.41 16 10 H 0.11 -0.05 5.10 -51.93 -0.26 -0.31 16 11 N -1.10 0.88 5.73 -4.20 -0.02 0.85 16 12 S 2.71 3.91 5.32 -107.50 -0.57 3.34 16 13 O -0.95 -2.99 15.01 -57.17 -0.86 -3.85 16 14 O -0.95 -2.80 14.10 -57.17 -0.81 -3.61 16 15 C -0.68 -1.00 5.86 -41.21 -0.24 -1.25 16 16 C -0.04 -0.04 6.50 -36.00 -0.23 -0.27 16 17 C -0.11 0.04 8.87 36.01 0.32 0.36 16 18 S 0.16 0.05 23.31 -107.50 -2.51 -2.45 16 19 C -0.19 -0.15 6.12 -36.00 -0.22 -0.38 16 20 C -0.10 0.12 8.49 36.00 0.31 0.43 16 21 C -0.06 -0.08 4.27 -106.25 -0.45 -0.54 16 22 C -0.09 -0.13 1.87 36.00 0.07 -0.06 16 23 O -0.53 -0.51 12.83 -35.23 -0.45 -0.96 16 24 Si 0.69 0.86 30.71 -169.99 -5.22 -4.36 16 25 C -0.14 0.11 7.43 -25.92 -0.19 -0.08 16 26 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 28 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 29 H 0.11 -0.37 7.88 -51.93 -0.41 -0.78 16 30 H 0.11 -0.39 8.14 -51.93 -0.42 -0.82 16 31 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 32 H 0.10 -0.36 8.10 -51.93 -0.42 -0.78 16 33 H 0.42 -1.02 8.78 -34.46 -0.30 -1.33 16 34 H 0.10 -0.06 8.14 -51.92 -0.42 -0.49 16 35 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 36 H 0.10 -0.05 6.55 -51.93 -0.34 -0.39 16 37 H 0.09 -0.22 8.00 -51.93 -0.42 -0.63 16 38 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 39 H 0.08 -0.10 3.47 -51.93 -0.18 -0.28 16 40 H 0.15 0.23 2.66 -51.93 -0.14 0.09 16 41 H 0.37 -0.50 5.38 45.56 0.25 -0.25 16 42 H -0.24 -0.78 7.11 56.52 0.40 -0.38 16 43 H -0.25 -0.32 5.95 56.52 0.34 0.01 16 44 H 0.09 -0.12 7.92 -51.93 -0.41 -0.53 16 45 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 LS Contribution 379.39 15.07 5.72 5.72 Total: 0.00 -8.08 379.39 -11.74 -19.82 By element: Atomic # 1 Polarization: -5.03 SS G_CDS: -6.10 Total: -11.13 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.21 Total: -0.18 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -0.02 Total: 0.85 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -2.82 Total: -11.61 kcal Atomic # 14 Polarization: 0.86 SS G_CDS: -5.22 Total: -4.36 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -3.08 Total: 0.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -8.08 -11.74 -19.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.315 kcal (2) G-P(sol) polarization free energy of solvation -8.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds