Wall clock time and date at job start Mon Mar 8 2021 13:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 117.00075 * 2 1 4 4 O 1.20824 * 119.99736 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00323 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47362 * 180.02562 * 5 3 2 7 7 H 1.08996 * 112.85077 * 45.32425 * 6 5 3 8 8 C 1.53784 * 113.61508 * 176.52967 * 6 5 3 9 9 C 1.53779 * 87.07847 * 140.06015 * 8 6 5 10 10 H 1.09005 * 113.61345 * 219.92806 * 9 8 6 11 11 N 1.46509 * 113.61448 * 89.11857 * 9 8 6 12 12 S 1.65591 * 120.00372 * 144.99682 * 11 9 8 13 13 O 1.42092 * 106.40301 * 178.53781 * 12 11 9 14 14 O 1.42100 * 106.40328 * 311.46141 * 12 11 9 15 15 C 1.76196 * 107.21920 * 64.99798 * 12 11 9 16 16 C 1.33386 * 122.54200 * 93.18652 * 15 12 11 17 17 C 1.50701 * 125.20085 * 0.02562 * 16 15 12 18 18 S 1.75889 * 109.59838 * 179.90584 * 16 15 12 19 19 C 1.75887 * 90.96747 * 0.30407 * 18 16 15 20 20 C 1.50698 * 125.20303 * 179.87070 * 19 18 16 21 21 C 1.33390 * 109.59480 * 359.82477 * 19 18 16 22 22 C 1.50696 * 122.54047 * 180.02562 * 21 19 18 23 23 O 1.42902 * 109.47315 * 311.21587 * 22 21 19 24 24 Si 1.86309 * 109.47016 * 71.21331 * 22 21 19 25 25 C 1.53774 * 87.08458 * 334.56773 * 9 8 6 26 26 H 1.08994 * 109.46870 * 299.99634 * 1 2 3 27 27 H 1.08995 * 109.47377 * 60.00114 * 1 2 3 28 28 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47324 * 59.99546 * 5 3 2 30 30 H 1.09004 * 109.47192 * 299.99886 * 5 3 2 31 31 H 1.08993 * 113.61335 * 254.61014 * 8 6 5 32 32 H 1.09002 * 113.61182 * 25.51296 * 8 6 5 33 33 H 0.96997 * 119.99541 * 324.99598 * 11 9 8 34 34 H 1.09008 * 109.47182 * 84.16529 * 17 16 15 35 35 H 1.09005 * 109.47246 * 204.16369 * 17 16 15 36 36 H 1.08997 * 109.47458 * 324.16709 * 17 16 15 37 37 H 1.09002 * 109.46592 * 273.10226 * 20 19 18 38 38 H 1.09002 * 109.47224 * 33.09779 * 20 19 18 39 39 H 1.09000 * 109.47477 * 153.10309 * 20 19 18 40 40 H 1.09005 * 109.47204 * 191.20889 * 22 21 19 41 41 H 0.96696 * 114.00166 * 67.13082 * 23 22 21 42 42 H 1.48491 * 110.00192 * 186.15890 * 24 22 21 43 43 H 1.48503 * 109.99852 * 307.48097 * 24 22 21 44 44 H 1.09003 * 113.61240 * 270.87968 * 25 9 8 45 45 H 1.09003 * 113.61742 * 139.98401 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 0.0002 7 1 3.4432 3.3478 0.7151 8 6 5.5235 2.9341 0.0850 9 6 5.3571 4.0762 -0.9313 10 1 6.1446 4.1088 -1.6843 11 7 5.1073 5.3805 -0.3126 12 16 5.7247 6.7548 -0.9998 13 8 5.2838 7.8392 -0.1943 14 8 7.0956 6.4902 -1.2643 15 6 4.9443 6.9500 -2.5674 16 6 3.8456 7.6876 -2.7350 17 6 3.1302 8.4411 -1.6435 18 16 3.3615 7.6491 -4.4256 19 6 4.7133 6.5950 -4.8196 20 6 5.0244 6.0577 -6.1927 21 6 5.4215 6.3448 -3.7173 22 6 6.6485 5.4699 -3.7233 23 8 6.3607 4.2505 -4.4107 24 14 8.0396 6.3571 -4.5886 25 6 4.0790 3.3638 -1.4042 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7810 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 5.8678 3.2674 1.0639 32 1 6.0923 2.0873 -0.2992 33 1 4.5803 5.4390 0.4996 34 1 3.6078 9.4100 -1.4977 35 1 2.0880 8.5887 -1.9268 36 1 3.1773 7.8697 -0.7165 37 1 4.4697 5.1335 -6.3554 38 1 4.7352 6.7921 -6.9444 39 1 6.0931 5.8586 -6.2715 40 1 6.9417 5.2481 -2.6971 41 1 6.1987 4.3616 -5.3575 42 1 9.2075 5.4516 -4.7330 43 1 7.5907 6.8242 -5.9249 44 1 4.2529 2.6346 -2.1954 45 1 3.2570 4.0441 -1.6274 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16627172_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:48 Heat of formation + Delta-G solvation = -119.854096 kcal Electronic energy + Delta-G solvation = -32143.485959 eV Core-core repulsion = 27769.052803 eV Total energy + Delta-G solvation = -4374.433156 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.094 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.64212 -40.55863 -40.13963 -38.59733 -37.51166 -37.37542 -37.06298 -34.44367 -34.10086 -31.22350 -31.08188 -28.38318 -28.08915 -26.63093 -25.95599 -24.60314 -23.23409 -21.94369 -21.13841 -20.60825 -19.90199 -19.17054 -18.58909 -18.51583 -18.12224 -17.65486 -17.50106 -17.21073 -16.96929 -16.24755 -16.05038 -15.82558 -15.45706 -15.37235 -15.24594 -14.79733 -14.66747 -14.47713 -14.23659 -14.14321 -14.07981 -13.95459 -13.62074 -13.47161 -13.35241 -13.31598 -13.20093 -13.08768 -12.90381 -12.85706 -12.73748 -12.68170 -12.38821 -11.95239 -11.83285 -11.75407 -11.67332 -11.47527 -11.31683 -11.12014 -10.87286 -10.49319 -9.99932 -9.40101 -4.94290 -0.80701 -0.44677 0.36678 0.68510 0.77928 1.18925 1.29221 1.48212 1.79526 1.82697 1.99018 2.59609 3.14633 3.30513 3.45016 3.49114 3.53868 3.67238 3.75164 3.84365 3.94420 3.95351 4.01096 4.15002 4.21164 4.25306 4.27147 4.38716 4.46913 4.47488 4.54068 4.54970 4.64025 4.65417 4.68356 4.78890 4.86121 4.87971 4.93839 5.04804 5.09063 5.14660 5.17771 5.20947 5.40389 5.55467 5.98602 6.35337 6.72399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.541 6.541 5 C -0.102 4.102 6 C -0.100 4.100 7 H 0.091 0.909 8 C -0.126 4.126 9 C 0.111 3.889 10 H 0.109 0.891 11 N -1.088 6.088 12 S 2.716 3.284 13 O -0.970 6.970 14 O -0.963 6.963 15 C -0.692 4.692 16 C -0.051 4.051 17 C -0.116 4.116 18 S 0.174 5.826 19 C -0.199 4.199 20 C -0.103 4.103 21 C -0.069 4.069 22 C -0.091 4.091 23 O -0.531 6.531 24 Si 0.711 3.289 25 C -0.144 4.144 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.427 0.573 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.142 0.858 41 H 0.378 0.622 42 H -0.273 1.273 43 H -0.243 1.243 44 H 0.100 0.900 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -3.248 -1.188 3.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.300 3.700 4 O -0.430 6.430 5 C -0.139 4.139 6 C -0.119 4.119 7 H 0.110 0.890 8 C -0.165 4.165 9 C 0.004 3.996 10 H 0.126 0.874 11 N -0.849 5.849 12 S 2.805 3.195 13 O -0.960 6.960 14 O -0.953 6.953 15 C -0.792 4.792 16 C -0.173 4.173 17 C -0.175 4.175 18 S 0.440 5.560 19 C -0.317 4.317 20 C -0.161 4.161 21 C -0.079 4.079 22 C -0.202 4.202 23 O -0.340 6.340 24 Si 0.612 3.388 25 C -0.183 4.183 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.264 0.736 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.159 0.841 41 H 0.229 0.771 42 H -0.198 1.198 43 H -0.167 1.167 44 H 0.119 0.881 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.769 -1.984 -1.987 3.318 hybrid contribution -0.816 -1.106 -0.143 1.382 sum -2.585 -3.090 -2.130 4.557 Atomic orbital electron populations 1.23455 0.75404 1.05368 1.02215 1.86519 1.24536 1.33655 1.83848 1.24560 0.93555 0.80811 0.71048 1.90664 1.68266 1.37354 1.46750 1.21594 0.85066 0.99208 1.08026 1.22435 0.97064 0.93990 0.98378 0.89050 1.23392 0.94837 0.97970 1.00274 1.21919 0.98497 0.82315 0.96916 0.87371 1.55133 1.71221 1.19757 1.38803 1.01125 0.73495 0.72242 0.72657 1.93584 1.82540 1.52271 1.67652 1.93478 1.31875 1.84667 1.85259 1.29397 1.12258 1.15440 1.22120 1.24776 0.95553 0.96762 1.00174 1.21010 1.00764 1.01164 0.94526 1.84285 1.26632 1.44889 1.00194 1.24477 1.01219 1.05835 1.00192 1.20775 1.02588 1.02886 0.89834 1.18507 0.98665 0.99821 0.90922 1.25388 1.00246 0.89353 1.05197 1.86611 1.92258 1.28924 1.26241 0.93318 0.77013 0.87912 0.80595 1.23486 0.97452 1.00087 0.97263 0.92204 0.92332 0.85582 0.85427 0.85077 0.89255 0.86349 0.73580 0.87756 0.88511 0.88714 0.88109 0.89359 0.90429 0.84118 0.77087 1.19821 1.16731 0.88133 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.83 10.57 -51.47 -0.54 -1.37 16 3 C 0.46 1.22 7.96 71.23 0.57 1.79 16 4 O -0.54 -4.96 15.54 21.97 0.34 -4.61 16 5 C -0.10 0.51 5.64 29.85 0.17 0.68 16 6 C -0.10 0.35 2.93 -10.27 -0.03 0.32 16 7 H 0.09 -0.09 7.70 -2.39 -0.02 -0.11 16 8 C -0.13 0.73 7.43 31.12 0.23 0.96 16 9 C 0.11 -0.18 4.51 45.51 0.21 0.02 16 10 H 0.11 -0.05 5.10 -2.38 -0.01 -0.06 16 11 N -1.09 0.92 5.73 -167.19 -0.96 -0.03 16 12 S 2.72 10.66 5.32 -56.49 -0.30 10.36 16 13 O -0.97 -7.22 15.01 -128.00 -1.92 -9.15 16 14 O -0.96 -6.74 14.10 -128.00 -1.80 -8.55 16 15 C -0.69 -2.56 5.86 21.22 0.12 -2.44 16 16 C -0.05 -0.12 6.50 24.59 0.16 0.04 16 17 C -0.12 0.02 8.87 71.24 0.63 0.65 16 18 S 0.17 0.11 23.31 -56.49 -1.32 -1.21 16 19 C -0.20 -0.30 6.12 24.59 0.15 -0.15 16 20 C -0.10 0.31 8.49 71.24 0.60 0.92 16 21 C -0.07 -0.23 4.27 -20.92 -0.09 -0.32 16 22 C -0.09 -0.32 1.87 71.23 0.13 -0.18 16 23 O -0.53 -1.07 12.83 -148.98 -1.91 -2.98 16 24 Si 0.71 2.27 30.71 68.60 2.11 4.38 16 25 C -0.14 0.19 7.43 31.12 0.23 0.42 16 26 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 27 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 28 H 0.13 -0.81 8.14 -2.39 -0.02 -0.82 16 29 H 0.13 -1.08 7.88 -2.39 -0.02 -1.10 16 30 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 31 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.12 -1.08 8.10 -2.39 -0.02 -1.10 16 33 H 0.43 -1.72 8.78 -96.75 -0.85 -2.57 16 34 H 0.10 -0.05 8.14 -2.38 -0.02 -0.07 16 35 H 0.10 -0.37 8.14 -2.38 -0.02 -0.39 16 36 H 0.09 0.01 6.55 -2.39 -0.02 -0.01 16 37 H 0.10 -0.62 8.00 -2.39 -0.02 -0.63 16 38 H 0.09 -0.41 8.14 -2.39 -0.02 -0.42 16 39 H 0.08 -0.25 3.47 -2.39 -0.01 -0.26 16 40 H 0.14 0.57 2.66 -2.38 -0.01 0.57 16 41 H 0.38 -1.09 5.38 -74.06 -0.40 -1.49 16 42 H -0.27 -2.15 7.11 99.48 0.71 -1.45 16 43 H -0.24 -0.62 5.95 99.48 0.59 -0.03 16 44 H 0.10 -0.26 7.92 -2.39 -0.02 -0.28 16 45 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 Total: 0.00 -19.00 379.39 -2.29 -21.28 By element: Atomic # 1 Polarization: -11.74 SS G_CDS: -0.26 Total: -12.00 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.28 Total: 3.87 kcal Atomic # 7 Polarization: 0.92 SS G_CDS: -0.96 Total: -0.03 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -5.84 Total: -26.66 kcal Atomic # 14 Polarization: 2.27 SS G_CDS: 2.11 Total: 4.38 kcal Atomic # 16 Polarization: 10.77 SS G_CDS: -1.62 Total: 9.16 kcal Total: -19.00 -2.29 -21.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.571 kcal (2) G-P(sol) polarization free energy of solvation -18.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds