Wall clock time and date at job start Mon Mar 8 2021 13:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00324 * 2 1 4 4 O 1.20821 * 119.99489 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00262 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47100 * 179.97438 * 5 3 2 7 7 H 1.08998 * 112.84911 * 316.20175 * 6 5 3 8 8 C 1.54056 * 113.69333 * 87.47082 * 6 5 3 9 9 C 1.53771 * 86.98670 * 139.99089 * 8 6 5 10 10 H 1.08999 * 113.61524 * 219.97902 * 9 8 6 11 11 N 1.46498 * 113.61932 * 89.15744 * 9 8 6 12 12 S 1.65602 * 120.00086 * 117.67355 * 11 9 8 13 13 O 1.42099 * 106.40227 * 310.77571 * 12 11 9 14 14 O 1.42097 * 106.40314 * 177.85294 * 12 11 9 15 15 C 1.76200 * 107.21577 * 64.31220 * 12 11 9 16 16 C 1.38213 * 119.99793 * 63.56493 * 15 12 11 17 17 C 1.50693 * 120.00267 * 0.02562 * 16 15 12 18 18 O 1.42899 * 109.47698 * 76.01339 * 17 16 15 19 19 Si 1.86304 * 109.47271 * 196.01716 * 17 16 15 20 20 C 1.38267 * 120.00019 * 179.97438 * 16 15 12 21 21 C 1.38214 * 119.99591 * 359.97438 * 20 16 15 22 22 C 1.38251 * 120.00560 * 359.97438 * 21 20 16 23 23 C 1.38222 * 119.99800 * 0.27496 * 22 21 20 24 24 C 1.53781 * 113.61599 * 184.99989 * 6 5 3 25 25 H 1.08998 * 109.47066 * 299.99976 * 1 2 3 26 26 H 1.09005 * 109.46940 * 60.00009 * 1 2 3 27 27 H 1.09005 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47009 * 60.00085 * 5 3 2 29 29 H 1.09000 * 109.47639 * 300.00130 * 5 3 2 30 30 H 1.09000 * 113.61043 * 25.47811 * 8 6 5 31 31 H 1.09005 * 113.69085 * 254.50574 * 8 6 5 32 32 H 0.96997 * 120.00208 * 297.68623 * 11 9 8 33 33 H 1.09006 * 109.46842 * 316.01547 * 17 16 15 34 34 H 0.96701 * 113.99899 * 65.17695 * 18 17 16 35 35 H 1.48500 * 110.00020 * 58.67912 * 19 17 16 36 36 H 1.48500 * 110.00013 * 179.97438 * 19 17 16 37 37 H 1.07995 * 120.00278 * 179.97438 * 20 16 15 38 38 H 1.08006 * 119.99770 * 180.02562 * 21 20 16 39 39 H 1.07996 * 120.00262 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.00030 * 179.71940 * 23 22 21 41 41 H 1.08995 * 113.61487 * 105.38668 * 24 6 5 42 42 H 1.09004 * 113.68839 * 334.49805 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.4252 3.3531 -0.6960 8 6 4.1154 3.3543 1.4088 9 6 5.3807 4.0692 0.9063 10 1 6.1871 4.0961 1.6391 11 7 5.1154 5.3780 0.3040 12 16 5.7561 6.7465 0.9816 13 8 5.4557 6.6857 2.3691 14 8 5.3638 7.8284 0.1481 15 6 7.5086 6.6241 0.8461 16 6 8.1049 6.5936 -0.4004 17 6 7.2563 6.6656 -1.6436 18 8 6.8125 8.0096 -1.8403 19 14 8.2623 6.1223 -3.1146 20 6 9.4802 6.4981 -0.5067 21 6 10.2586 6.4336 0.6335 22 6 9.6622 6.4652 1.8804 23 6 8.2871 6.5555 1.9867 24 6 5.5209 2.9348 -0.1225 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.9564 0.7805 -0.8892 29 1 3.9558 0.7809 0.8908 30 1 4.3100 2.6191 2.1896 31 1 3.3004 4.0335 1.6592 32 1 4.5643 5.4431 -0.4915 33 1 6.3924 6.0103 -1.5322 34 1 7.5254 8.6361 -2.0258 35 1 8.7564 4.7372 -2.9083 36 1 7.4365 6.1882 -4.3470 37 1 9.9461 6.4739 -1.4807 38 1 11.3329 6.3594 0.5505 39 1 10.2705 6.4152 2.7714 40 1 7.8209 6.5755 2.9606 41 1 5.8400 3.2755 -1.1074 42 1 6.1005 2.0857 0.2400 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16627172_2726874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:53 Heat of formation + Delta-G solvation = -123.531081 kcal Electronic energy + Delta-G solvation = -28701.891917 eV Core-core repulsion = 24549.222306 eV Total energy + Delta-G solvation = -4152.669611 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.62187 -40.76172 -40.32222 -38.26414 -37.45428 -37.36311 -36.66572 -34.53334 -32.86469 -32.46824 -31.31373 -28.43003 -27.03690 -26.81494 -24.71178 -24.47972 -22.84173 -21.94190 -20.99858 -20.31872 -19.17128 -18.56342 -18.39277 -18.03569 -17.63926 -17.48296 -17.27112 -16.92297 -16.55690 -16.00314 -15.80909 -15.69189 -15.50582 -15.33522 -15.05146 -14.85194 -14.30317 -14.19380 -14.05620 -13.95139 -13.56318 -13.47370 -13.15995 -13.06108 -12.93934 -12.89537 -12.85125 -12.71490 -12.28086 -12.18517 -12.09344 -11.82108 -11.76262 -11.57329 -11.36471 -11.35418 -10.61506 -10.53981 -10.48007 -10.13619 -5.19259 -0.61515 -0.29172 0.04561 1.07209 1.23696 1.50105 1.72936 1.82450 1.91232 2.33215 2.79045 3.23350 3.28871 3.34539 3.41671 3.47868 3.56637 3.65626 3.76302 3.77768 3.83931 3.96002 4.07155 4.15771 4.16950 4.21904 4.24883 4.28556 4.33223 4.39348 4.48072 4.56515 4.59192 4.63656 4.68068 4.81000 4.91233 4.99795 5.02210 5.04693 5.17458 5.32940 5.44269 5.63009 5.86041 6.57437 6.76804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.503 6.503 5 C -0.105 4.105 6 C -0.103 4.103 7 H 0.104 0.896 8 C -0.145 4.145 9 C 0.128 3.872 10 H 0.104 0.896 11 N -1.102 6.102 12 S 2.684 3.316 13 O -0.957 6.957 14 O -0.920 6.920 15 C -0.656 4.656 16 C -0.015 4.015 17 C -0.107 4.107 18 O -0.500 6.500 19 Si 0.692 3.308 20 C -0.137 4.137 21 C -0.058 4.058 22 C -0.135 4.135 23 C -0.022 4.022 24 C -0.142 4.142 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.420 0.580 33 H 0.113 0.887 34 H 0.374 0.626 35 H -0.252 1.252 36 H -0.246 1.246 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.641 -4.696 -1.516 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.142 4.142 6 C -0.122 4.122 7 H 0.122 0.878 8 C -0.184 4.184 9 C 0.020 3.980 10 H 0.121 0.879 11 N -0.860 5.860 12 S 2.773 3.227 13 O -0.947 6.947 14 O -0.910 6.910 15 C -0.742 4.742 16 C -0.017 4.017 17 C -0.218 4.218 18 O -0.304 6.304 19 Si 0.592 3.408 20 C -0.155 4.155 21 C -0.076 4.076 22 C -0.153 4.153 23 C -0.042 4.042 24 C -0.181 4.181 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.130 0.870 34 H 0.220 0.780 35 H -0.176 1.176 36 H -0.171 1.171 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.096 0.904 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.545 -4.570 -1.532 7.347 hybrid contribution -0.114 -0.488 -0.021 0.502 sum 5.430 -5.058 -1.553 7.582 Atomic orbital electron populations 1.23297 0.75961 1.03908 1.02704 1.86506 1.23777 1.33568 1.84092 1.23836 0.92320 0.81391 0.72398 1.90695 1.67231 1.36309 1.44789 1.21446 0.87585 0.99100 1.06116 1.22549 0.96220 0.93985 0.99420 0.87793 1.23563 0.98455 1.00103 0.96326 1.21557 0.98600 0.82172 0.95700 0.87850 1.55554 1.65838 1.21016 1.43632 1.02420 0.73715 0.72767 0.73823 1.93598 1.82862 1.86019 1.32234 1.93743 1.80855 1.48803 1.67586 1.30850 1.27166 1.17443 0.98738 1.20028 0.94724 0.93250 0.93692 1.25459 1.03362 0.90781 1.02206 1.86878 1.35240 1.15018 1.93268 0.94630 0.85051 0.84249 0.76913 1.21110 0.92819 1.02546 0.98998 1.21495 1.00573 0.93231 0.92264 1.21403 0.94813 1.00848 0.98273 1.21103 0.94261 0.91262 0.97533 1.23449 0.95891 0.98648 1.00134 0.91756 0.91803 0.87938 0.87333 0.87231 0.88649 0.89854 0.74472 0.86969 0.77961 1.17623 1.17069 0.84552 0.84554 0.84576 0.83674 0.90442 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.48 10.57 -39.27 -0.41 -0.89 16 3 C 0.46 0.68 7.96 36.00 0.29 0.97 16 4 O -0.50 -2.31 15.51 -18.75 -0.29 -2.60 16 5 C -0.10 0.22 5.65 -27.89 -0.16 0.06 16 6 C -0.10 0.16 2.97 -89.66 -0.27 -0.11 16 7 H 0.10 -0.03 7.64 -51.93 -0.40 -0.42 16 8 C -0.15 0.11 7.45 -25.78 -0.19 -0.09 16 9 C 0.13 -0.17 4.43 -67.12 -0.30 -0.47 16 10 H 0.10 -0.23 8.05 -51.93 -0.42 -0.65 16 11 N -1.10 0.01 4.43 -4.20 -0.02 -0.01 16 12 S 2.68 7.43 4.92 -107.50 -0.53 6.91 16 13 O -0.96 -5.11 16.75 -57.17 -0.96 -6.07 16 14 O -0.92 -5.27 15.05 -66.37 -1.00 -6.27 16 15 C -0.66 -0.76 5.86 -39.58 -0.23 -0.99 16 16 C -0.02 0.00 5.27 -104.62 -0.55 -0.55 16 17 C -0.11 0.02 1.87 36.00 0.07 0.08 16 18 O -0.50 -0.68 10.63 -57.63 -0.61 -1.30 16 19 Si 0.69 -1.36 29.85 -169.99 -5.07 -6.44 16 20 C -0.14 0.25 8.66 -39.58 -0.34 -0.09 16 21 C -0.06 0.13 10.05 -39.59 -0.40 -0.27 16 22 C -0.13 0.19 10.05 -39.58 -0.40 -0.21 16 23 C -0.02 -0.01 9.55 -39.58 -0.38 -0.39 16 24 C -0.14 0.43 7.43 -25.92 -0.19 0.24 16 25 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 26 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 27 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 28 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 29 H 0.11 -0.42 7.86 -51.93 -0.41 -0.82 16 30 H 0.10 -0.21 7.91 -51.93 -0.41 -0.62 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.42 -0.47 8.45 -34.47 -0.29 -0.76 16 33 H 0.11 -0.05 5.77 -51.93 -0.30 -0.35 16 34 H 0.37 -1.05 8.61 45.56 0.39 -0.65 16 35 H -0.25 0.07 7.11 56.52 0.40 0.47 16 36 H -0.25 -0.28 7.11 56.52 0.40 0.13 16 37 H 0.14 -0.62 5.16 -52.49 -0.27 -0.89 16 38 H 0.14 -0.65 8.06 -52.48 -0.42 -1.07 16 39 H 0.14 -0.47 8.06 -52.49 -0.42 -0.90 16 40 H 0.15 -0.03 7.34 -52.49 -0.39 -0.42 16 41 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 42 H 0.10 -0.46 8.10 -51.93 -0.42 -0.88 16 LS Contribution 359.51 15.07 5.42 5.42 Total: 0.00 -12.26 359.51 -10.95 -23.21 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -5.49 Total: -11.21 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.99 Total: -0.75 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -0.02 Total: -0.01 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -3.27 Total: -17.13 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.07 Total: -6.44 kcal Atomic # 16 Polarization: 7.43 SS G_CDS: -0.53 Total: 6.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -12.26 -10.95 -23.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_2726874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.320 kcal (2) G-P(sol) polarization free energy of solvation -12.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds