Wall clock time and date at job start Mon Mar 8 2021 13:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00324 * 2 1 4 4 O 1.20821 * 119.99489 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00262 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47100 * 179.97438 * 5 3 2 7 7 H 1.08998 * 112.84911 * 316.20175 * 6 5 3 8 8 C 1.54056 * 113.69333 * 87.47082 * 6 5 3 9 9 C 1.53771 * 86.98670 * 139.99089 * 8 6 5 10 10 H 1.08999 * 113.61524 * 219.97902 * 9 8 6 11 11 N 1.46498 * 113.61932 * 89.15744 * 9 8 6 12 12 S 1.65602 * 120.00086 * 117.67355 * 11 9 8 13 13 O 1.42099 * 106.40227 * 310.77571 * 12 11 9 14 14 O 1.42097 * 106.40314 * 177.85294 * 12 11 9 15 15 C 1.76200 * 107.21577 * 64.31220 * 12 11 9 16 16 C 1.38213 * 119.99793 * 63.56493 * 15 12 11 17 17 C 1.50693 * 120.00267 * 0.02562 * 16 15 12 18 18 O 1.42899 * 109.47698 * 76.01339 * 17 16 15 19 19 Si 1.86304 * 109.47271 * 196.01716 * 17 16 15 20 20 C 1.38267 * 120.00019 * 179.97438 * 16 15 12 21 21 C 1.38214 * 119.99591 * 359.97438 * 20 16 15 22 22 C 1.38251 * 120.00560 * 359.97438 * 21 20 16 23 23 C 1.38222 * 119.99800 * 0.27496 * 22 21 20 24 24 C 1.53781 * 113.61599 * 184.99989 * 6 5 3 25 25 H 1.08998 * 109.47066 * 299.99976 * 1 2 3 26 26 H 1.09005 * 109.46940 * 60.00009 * 1 2 3 27 27 H 1.09005 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47009 * 60.00085 * 5 3 2 29 29 H 1.09000 * 109.47639 * 300.00130 * 5 3 2 30 30 H 1.09000 * 113.61043 * 25.47811 * 8 6 5 31 31 H 1.09005 * 113.69085 * 254.50574 * 8 6 5 32 32 H 0.96997 * 120.00208 * 297.68623 * 11 9 8 33 33 H 1.09006 * 109.46842 * 316.01547 * 17 16 15 34 34 H 0.96701 * 113.99899 * 65.17695 * 18 17 16 35 35 H 1.48500 * 110.00020 * 58.67912 * 19 17 16 36 36 H 1.48500 * 110.00013 * 179.97438 * 19 17 16 37 37 H 1.07995 * 120.00278 * 179.97438 * 20 16 15 38 38 H 1.08006 * 119.99770 * 180.02562 * 21 20 16 39 39 H 1.07996 * 120.00262 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.00030 * 179.71940 * 23 22 21 41 41 H 1.08995 * 113.61487 * 105.38668 * 24 6 5 42 42 H 1.09004 * 113.68839 * 334.49805 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.4252 3.3531 -0.6960 8 6 4.1154 3.3543 1.4088 9 6 5.3807 4.0692 0.9063 10 1 6.1871 4.0961 1.6391 11 7 5.1154 5.3780 0.3040 12 16 5.7561 6.7465 0.9816 13 8 5.4557 6.6857 2.3691 14 8 5.3638 7.8284 0.1481 15 6 7.5086 6.6241 0.8461 16 6 8.1049 6.5936 -0.4004 17 6 7.2563 6.6656 -1.6436 18 8 6.8125 8.0096 -1.8403 19 14 8.2623 6.1223 -3.1146 20 6 9.4802 6.4981 -0.5067 21 6 10.2586 6.4336 0.6335 22 6 9.6622 6.4652 1.8804 23 6 8.2871 6.5555 1.9867 24 6 5.5209 2.9348 -0.1225 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.9564 0.7805 -0.8892 29 1 3.9558 0.7809 0.8908 30 1 4.3100 2.6191 2.1896 31 1 3.3004 4.0335 1.6592 32 1 4.5643 5.4431 -0.4915 33 1 6.3924 6.0103 -1.5322 34 1 7.5254 8.6361 -2.0258 35 1 8.7564 4.7372 -2.9083 36 1 7.4365 6.1882 -4.3470 37 1 9.9461 6.4739 -1.4807 38 1 11.3329 6.3594 0.5505 39 1 10.2705 6.4152 2.7714 40 1 7.8209 6.5755 2.9606 41 1 5.8400 3.2755 -1.1074 42 1 6.1005 2.0857 0.2400 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16627172_2726874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:51 Heat of formation + Delta-G solvation = -127.003447 kcal Electronic energy + Delta-G solvation = -28702.042490 eV Core-core repulsion = 24549.222306 eV Total energy + Delta-G solvation = -4152.820184 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68288 -40.66417 -40.26986 -38.49117 -37.57001 -37.43349 -36.98259 -34.53599 -32.77957 -32.36629 -31.26709 -28.40768 -26.95805 -26.67934 -24.66558 -24.39779 -22.75626 -21.97406 -21.03693 -20.30247 -19.19082 -18.64912 -18.52102 -18.03809 -17.69582 -17.54958 -17.28659 -16.84793 -16.50572 -16.01523 -15.80874 -15.61712 -15.43972 -15.35010 -14.96686 -14.83157 -14.27728 -14.23414 -13.98775 -13.87404 -13.48693 -13.40638 -13.27553 -13.21584 -13.12622 -12.95552 -12.89812 -12.76323 -12.22728 -12.17388 -11.99351 -11.86681 -11.80974 -11.58645 -11.39790 -11.23726 -10.57109 -10.46237 -10.42388 -10.02993 -5.03847 -0.73749 -0.26587 0.16347 1.14993 1.19336 1.63481 1.75790 1.85282 1.94143 2.41674 2.65721 3.26524 3.39345 3.44461 3.47494 3.55890 3.68982 3.78121 3.84102 3.88824 3.98103 4.06637 4.19145 4.22906 4.24171 4.31221 4.36988 4.40946 4.46421 4.58699 4.59961 4.65523 4.77586 4.80230 4.82448 4.95952 5.02196 5.07824 5.10687 5.19848 5.32502 5.35945 5.48475 5.78724 5.87343 6.68646 6.78135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.453 3.547 4 O -0.544 6.544 5 C -0.099 4.099 6 C -0.104 4.104 7 H 0.083 0.917 8 C -0.153 4.153 9 C 0.117 3.883 10 H 0.113 0.887 11 N -1.097 6.097 12 S 2.690 3.310 13 O -0.995 6.995 14 O -0.960 6.960 15 C -0.664 4.664 16 C -0.024 4.024 17 C -0.130 4.130 18 O -0.528 6.528 19 Si 0.791 3.209 20 C -0.136 4.136 21 C -0.051 4.051 22 C -0.136 4.136 23 C -0.040 4.040 24 C -0.124 4.124 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.422 0.578 33 H 0.106 0.894 34 H 0.388 0.612 35 H -0.264 1.264 36 H -0.294 1.294 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -6.372 -2.048 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.298 3.702 4 O -0.434 6.434 5 C -0.136 4.136 6 C -0.123 4.123 7 H 0.102 0.898 8 C -0.192 4.192 9 C 0.010 3.990 10 H 0.131 0.869 11 N -0.857 5.857 12 S 2.783 3.217 13 O -0.985 6.985 14 O -0.950 6.950 15 C -0.754 4.754 16 C -0.026 4.026 17 C -0.239 4.239 18 O -0.334 6.334 19 Si 0.692 3.308 20 C -0.154 4.154 21 C -0.069 4.069 22 C -0.155 4.155 23 C -0.060 4.060 24 C -0.163 4.163 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.259 0.741 33 H 0.123 0.877 34 H 0.237 0.763 35 H -0.189 1.189 36 H -0.222 1.222 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.175 0.825 40 H 0.158 0.842 41 H 0.101 0.899 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.594 -6.241 -2.029 10.813 hybrid contribution -1.106 0.016 0.153 1.116 sum 7.489 -6.225 -1.876 9.917 Atomic orbital electron populations 1.23466 0.75409 1.05438 1.02167 1.86511 1.24518 1.33521 1.83821 1.24636 0.93719 0.80797 0.71015 1.90683 1.68375 1.37540 1.46827 1.21593 0.84871 0.98851 1.08319 1.22486 0.97348 0.94236 0.98227 0.89821 1.23659 0.97778 1.00264 0.97541 1.21800 0.98598 0.81862 0.96778 0.86918 1.55317 1.65870 1.20976 1.43567 1.01751 0.74585 0.72675 0.72695 1.93541 1.84066 1.86639 1.34205 1.93684 1.82190 1.51008 1.68098 1.30429 1.25255 1.19725 0.99977 1.20127 0.95769 0.93757 0.92925 1.25891 1.03987 0.90150 1.03860 1.86838 1.36918 1.16182 1.93452 0.93517 0.82883 0.82056 0.72301 1.21474 0.91859 1.01300 1.00744 1.21939 1.02242 0.91275 0.91463 1.21716 0.94004 0.99960 0.99833 1.21219 0.95401 0.92310 0.97064 1.23431 0.94673 0.98346 0.99855 0.92376 0.92343 0.85380 0.84962 0.84781 0.86885 0.92923 0.74098 0.87655 0.76278 1.18914 1.22207 0.81614 0.81226 0.82458 0.84220 0.89888 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.37 -1.06 10.57 -51.45 -0.54 -1.60 16 3 C 0.45 1.70 7.96 71.23 0.57 2.26 16 4 O -0.54 -6.19 15.51 21.98 0.34 -5.85 16 5 C -0.10 0.50 5.65 29.85 0.17 0.67 16 6 C -0.10 0.27 2.97 -10.17 -0.03 0.24 16 7 H 0.08 0.13 7.64 -2.39 -0.02 0.11 16 8 C -0.15 0.03 7.45 31.21 0.23 0.26 16 9 C 0.12 -0.21 4.43 45.52 0.20 -0.01 16 10 H 0.11 -0.44 8.05 -2.39 -0.02 -0.46 16 11 N -1.10 -2.44 4.43 -167.21 -0.74 -3.18 16 12 S 2.69 22.15 4.92 -56.49 -0.28 21.87 16 13 O -0.99 -13.84 16.75 -128.00 -2.14 -15.98 16 14 O -0.96 -14.14 15.05 -119.20 -1.79 -15.93 16 15 C -0.66 -2.17 5.86 22.27 0.13 -2.04 16 16 C -0.02 0.01 5.27 -19.87 -0.10 -0.10 16 17 C -0.13 -0.02 1.87 71.23 0.13 0.12 16 18 O -0.53 -2.17 10.63 -127.56 -1.36 -3.53 16 19 Si 0.79 -3.87 29.85 68.60 2.05 -1.82 16 20 C -0.14 0.81 8.66 22.27 0.19 1.00 16 21 C -0.05 0.38 10.05 22.27 0.22 0.60 16 22 C -0.14 0.59 10.05 22.27 0.22 0.81 16 23 C -0.04 -0.04 9.55 22.27 0.21 0.17 16 24 C -0.12 0.87 7.43 31.12 0.23 1.10 16 25 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 26 H 0.06 0.06 8.13 -2.38 -0.02 0.04 16 27 H 0.13 -0.73 8.14 -2.38 -0.02 -0.75 16 28 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 29 H 0.13 -1.29 7.86 -2.39 -0.02 -1.31 16 30 H 0.11 -0.48 7.91 -2.39 -0.02 -0.50 16 31 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.42 0.27 8.45 -96.75 -0.82 -0.55 16 33 H 0.11 0.05 5.77 -2.38 -0.01 0.04 16 34 H 0.39 -1.86 8.61 -74.06 -0.64 -2.50 16 35 H -0.26 0.75 7.11 99.48 0.71 1.45 16 36 H -0.29 -0.86 7.11 99.48 0.71 -0.16 16 37 H 0.17 -2.07 5.16 -2.91 -0.02 -2.09 16 38 H 0.17 -2.37 8.06 -2.91 -0.02 -2.39 16 39 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 40 H 0.14 0.18 7.34 -2.91 -0.02 0.15 16 41 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.13 -1.54 8.10 -2.39 -0.02 -1.56 16 Total: 0.00 -32.00 359.51 -1.24 -33.23 By element: Atomic # 1 Polarization: -13.14 SS G_CDS: -0.35 Total: -13.49 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 3.58 Total: 6.28 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: -0.74 Total: -3.18 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -5.50 Total: -42.90 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.05 Total: -1.82 kcal Atomic # 16 Polarization: 22.15 SS G_CDS: -0.28 Total: 21.87 kcal Total: -32.00 -1.24 -33.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16627172_2726874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.770 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds