Wall clock time and date at job start Mon Mar 8 2021 12:15:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13601 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 H 1.09000 * 109.47345 * 359.26003 * 3 2 1
5 5 C 1.53004 * 109.46977 * 119.26186 * 3 2 1
6 6 C 1.52999 * 109.46851 * 179.97438 * 5 3 2
7 7 C 1.52993 * 109.47462 * 300.00056 * 6 5 3
8 8 H 1.09003 * 109.47209 * 300.00500 * 7 6 5
9 9 N 1.46502 * 109.47278 * 180.02562 * 7 6 5
10 10 S 1.65608 * 119.99836 * 143.57898 * 9 7 6
11 11 O 1.42093 * 106.40117 * 310.33598 * 10 9 7
12 12 O 1.42101 * 106.39635 * 177.41975 * 10 9 7
13 13 C 1.76194 * 107.21622 * 63.87883 * 10 9 7
14 14 C 1.38220 * 120.00200 * 64.15047 * 13 10 9
15 15 C 1.50697 * 119.99742 * 359.97438 * 14 13 10
16 16 O 1.42907 * 109.47219 * 75.52919 * 15 14 13
17 17 Si 1.86300 * 109.47219 * 195.52593 * 15 14 13
18 18 C 1.38257 * 120.00014 * 179.71935 * 14 13 10
19 19 C 1.38215 * 119.99744 * 0.27509 * 18 14 13
20 20 C 1.38258 * 120.00247 * 359.95417 * 19 18 14
21 21 C 1.38209 * 119.99883 * 0.02562 * 20 19 18
22 22 C 1.52999 * 109.47429 * 59.99952 * 7 6 5
23 23 C 1.53002 * 109.46594 * 239.25780 * 3 2 1
24 24 H 1.09003 * 109.46760 * 59.99591 * 5 3 2
25 25 H 1.09002 * 109.47249 * 299.99620 * 5 3 2
26 26 H 1.09007 * 109.46763 * 179.97438 * 6 5 3
27 27 H 1.09000 * 109.46952 * 60.00134 * 6 5 3
28 28 H 0.96994 * 120.00140 * 323.58335 * 9 7 6
29 29 H 1.08995 * 109.47542 * 315.52877 * 15 14 13
30 30 H 0.96689 * 114.00209 * 184.95682 * 16 15 14
31 31 H 1.48498 * 110.00181 * 178.68233 * 17 15 14
32 32 H 1.48501 * 109.99816 * 300.00558 * 17 15 14
33 33 H 1.07995 * 120.00089 * 180.25271 * 18 14 13
34 34 H 1.08003 * 119.99588 * 179.97438 * 19 18 14
35 35 H 1.08001 * 119.99744 * 180.02562 * 20 19 18
36 36 H 1.08005 * 119.99612 * 180.02562 * 21 20 19
37 37 H 1.09000 * 109.46950 * 59.99943 * 22 7 6
38 38 H 1.09002 * 109.47546 * 180.02562 * 22 7 6
39 39 H 1.09000 * 109.47457 * 300.00155 * 23 3 2
40 40 H 1.08999 * 109.46652 * 60.00693 * 23 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 1 2.9719 -1.0267 0.0133
5 6 3.1177 0.7060 -1.2585
6 6 4.6477 0.7072 -1.2581
7 6 5.1569 1.4451 -0.0184
8 1 4.7927 2.4724 -0.0317
9 7 6.6219 1.4467 -0.0184
10 16 7.4484 2.7695 0.5383
11 8 6.8836 3.8989 -0.1131
12 8 8.8287 2.4399 0.4654
13 6 7.0672 2.9401 2.2501
14 6 7.4484 1.9575 3.1443
15 6 8.1895 0.7399 2.6551
16 8 9.5472 1.0885 2.3768
17 14 8.1444 -0.5830 3.9661
18 6 7.1544 2.0941 4.4883
19 6 6.4744 3.2107 4.9369
20 6 6.0889 4.1913 4.0417
21 6 6.3831 4.0548 2.6982
22 6 4.6472 0.7398 1.2401
23 6 3.1176 0.7383 1.2398
24 1 2.7538 1.7334 -1.2717
25 1 2.7546 0.1806 -2.1418
26 1 5.0108 1.2094 -2.1549
27 1 5.0118 -0.3201 -1.2447
28 1 7.1078 0.6732 -0.3445
29 1 7.7166 0.3674 1.7465
30 1 10.0651 0.3717 1.9860
31 1 8.8445 -1.8004 3.4835
32 1 8.7862 -0.0873 5.2101
33 1 7.4559 1.3283 5.1876
34 1 6.2443 3.3172 5.9867
35 1 5.5578 5.0639 4.3924
36 1 6.0824 4.8211 1.9990
37 1 5.0114 -0.2875 1.2536
38 1 5.0096 1.2657 2.1234
39 1 2.7537 1.7657 1.2266
40 1 2.7545 0.2357 2.1363
There are 56 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 56
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_40_16662492_2726874.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 12:15:37
Heat of formation + Delta-G solvation = -49.386367 kcal
Electronic energy + Delta-G solvation = -26542.521728 eV
Core-core repulsion = 22836.779606 eV
Total energy + Delta-G solvation = -3705.742122 eV
No. of doubly occupied orbitals = 56
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 323.102 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.63064 -40.07142 -38.45682 -37.58606 -37.36893 -36.90039 -35.11768 -32.91977
-32.35815 -31.65137 -30.20755 -26.89010 -24.41944 -24.09921 -23.55196 -22.60920
-21.25728 -20.44898 -19.02792 -18.66071 -18.54803 -18.27586 -17.59732 -16.99333
-16.66258 -15.96197 -15.76181 -15.57852 -15.22333 -15.04563 -15.01087 -14.74902
-14.62569 -14.15036 -14.03242 -13.81725 -13.73227 -13.48223 -13.32572 -13.19981
-13.08600 -13.06474 -13.02797 -12.94571 -12.16583 -12.08875 -12.03444 -11.95967
-11.88227 -11.65574 -11.37140 -11.17381 -10.56309 -10.35430 -10.21354 -10.00168
-4.93400 -0.63364 -0.22134 0.18107 1.23101 1.61640 1.83786 1.87207
1.95713 1.99930 2.43163 2.73757 3.03153 3.29152 3.39814 3.75719
3.76703 3.84464 3.90395 3.95989 4.11080 4.14535 4.16197 4.31203
4.34596 4.41589 4.43608 4.52367 4.60731 4.64126 4.67855 4.84222
4.97465 4.98579 5.05583 5.23337 5.24212 5.27062 5.32858 5.34667
5.35268 5.48518 5.61820 5.80175 6.17107 6.65688 6.67216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.508 5.508
2 C 0.237 3.763
3 C 0.010 3.990
4 H 0.151 0.849
5 C -0.111 4.111
6 C -0.115 4.115
7 C 0.138 3.862
8 H 0.083 0.917
9 N -1.099 6.099
10 S 2.694 3.306
11 O -0.996 6.996
12 O -0.965 6.965
13 C -0.662 4.662
14 C 0.021 3.979
15 C -0.128 4.128
16 O -0.533 6.533
17 Si 0.780 3.220
18 C -0.146 4.146
19 C -0.056 4.056
20 C -0.135 4.135
21 C -0.038 4.038
22 C -0.141 4.141
23 C -0.108 4.108
24 H 0.066 0.934
25 H 0.084 0.916
26 H 0.074 0.926
27 H 0.104 0.896
28 H 0.431 0.569
29 H 0.101 0.899
30 H 0.394 0.606
31 H -0.280 1.280
32 H -0.296 1.296
33 H 0.147 0.853
34 H 0.161 0.839
35 H 0.155 0.845
36 H 0.143 0.857
37 H 0.111 0.889
38 H 0.077 0.923
39 H 0.066 0.934
40 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.718 -5.307 2.855 6.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.185 5.185
2 C -0.080 4.080
3 C -0.011 4.011
4 H 0.169 0.831
5 C -0.150 4.150
6 C -0.155 4.155
7 C 0.031 3.969
8 H 0.101 0.899
9 N -0.862 5.862
10 S 2.786 3.214
11 O -0.986 6.986
12 O -0.955 6.955
13 C -0.750 4.750
14 C 0.020 3.980
15 C -0.235 4.235
16 O -0.342 6.342
17 Si 0.684 3.316
18 C -0.164 4.164
19 C -0.074 4.074
20 C -0.154 4.154
21 C -0.057 4.057
22 C -0.180 4.180
23 C -0.147 4.147
24 H 0.085 0.915
25 H 0.103 0.897
26 H 0.093 0.907
27 H 0.122 0.878
28 H 0.269 0.731
29 H 0.119 0.881
30 H 0.244 0.756
31 H -0.207 1.207
32 H -0.224 1.224
33 H 0.164 0.836
34 H 0.178 0.822
35 H 0.173 0.827
36 H 0.161 0.839
37 H 0.129 0.871
38 H 0.095 0.905
39 H 0.084 0.916
40 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -1.697 -4.546 3.160 5.791
hybrid contribution 1.346 0.029 -0.266 1.373
sum -0.351 -4.517 2.893 5.376
Atomic orbital electron populations
1.81319 1.15497 1.11103 1.10552 1.29963 0.95740 0.91054 0.91223
1.19319 0.78416 1.05261 0.98083 0.83114 1.21553 0.95671 1.01387
0.96407 1.21771 0.94027 1.02916 0.96743 1.21147 0.77043 1.01433
0.97241 0.89909 1.55364 1.15935 1.35457 1.79446 1.01601 0.72773
0.73176 0.73872 1.93543 1.79900 1.51455 1.73679 1.93644 1.31529
1.83608 1.86743 1.30592 1.15336 1.03930 1.25163 1.18978 0.92621
0.92808 0.93632 1.25563 0.85451 1.02368 1.10161 1.86715 1.20682
1.42575 1.84229 0.94388 0.89891 0.73209 0.74156 1.21486 1.00371
0.99977 0.94609 1.21815 0.92299 0.91712 1.01558 1.21665 1.00582
1.00519 0.92631 1.21196 0.92107 0.94652 0.97739 1.22190 0.94415
1.04182 0.97255 1.21520 0.95596 1.01083 0.96533 0.91518 0.89719
0.90704 0.87760 0.73089 0.88115 0.75581 1.20700 1.22375 0.83603
0.82153 0.82692 0.83933 0.87102 0.90464 0.91565 0.89173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -3.97 18.54 20.01 0.37 -3.60 16
2 C 0.24 -0.33 14.65 89.44 1.31 0.98 16
3 C 0.01 -0.12 2.57 -12.60 -0.03 -0.15 16
4 H 0.15 -2.64 8.14 -2.39 -0.02 -2.66 16
5 C -0.11 1.23 5.16 30.60 0.16 1.39 16
6 C -0.12 1.45 5.46 30.59 0.17 1.62 16
7 C 0.14 -1.35 2.78 44.99 0.12 -1.23 16
8 H 0.08 -0.56 7.53 -2.39 -0.02 -0.58 16
9 N -1.10 8.08 4.19 -169.39 -0.71 7.37 16
10 S 2.69 7.52 4.96 -56.49 -0.28 7.24 16
11 O -1.00 -9.23 16.36 -128.00 -2.09 -11.32 16
12 O -0.97 -8.61 14.97 -119.12 -1.78 -10.39 16
13 C -0.66 -0.71 4.93 22.27 0.11 -0.60 16
14 C 0.02 -0.02 4.74 -19.87 -0.09 -0.11 16
15 C -0.13 0.40 1.83 71.23 0.13 0.53 16
16 O -0.53 -1.60 10.42 -127.34 -1.33 -2.93 16
17 Si 0.78 -4.55 30.30 68.60 2.08 -2.47 16
18 C -0.15 0.43 8.66 22.27 0.19 0.63 16
19 C -0.06 0.28 10.05 22.27 0.22 0.50 16
20 C -0.14 0.49 10.05 22.27 0.22 0.72 16
21 C -0.04 0.00 9.55 22.27 0.21 0.21 16
22 C -0.14 1.92 5.53 30.58 0.17 2.09 16
23 C -0.11 1.33 5.16 30.58 0.16 1.48 16
24 H 0.07 -0.57 8.14 -2.39 -0.02 -0.59 16
25 H 0.08 -0.96 8.14 -2.39 -0.02 -0.98 16
26 H 0.07 -0.77 8.14 -2.38 -0.02 -0.79 16
27 H 0.10 -1.80 8.14 -2.39 -0.02 -1.82 16
28 H 0.43 -5.35 8.56 -96.75 -0.83 -6.18 16
29 H 0.10 -0.93 5.86 -2.39 -0.01 -0.94 16
30 H 0.39 -1.66 8.86 -74.06 -0.66 -2.32 16
31 H -0.28 0.52 7.11 99.48 0.71 1.23 16
32 H -0.30 -0.39 6.72 99.48 0.67 0.27 16
33 H 0.15 -0.82 4.91 -2.91 -0.01 -0.83 16
34 H 0.16 -1.67 8.06 -2.91 -0.02 -1.70 16
35 H 0.16 -1.26 8.06 -2.91 -0.02 -1.29 16
36 H 0.14 -0.04 7.34 -2.91 -0.02 -0.06 16
37 H 0.11 -2.09 8.14 -2.39 -0.02 -2.10 16
38 H 0.08 -0.94 6.59 -2.39 -0.02 -0.96 16
39 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16
40 H 0.09 -1.20 8.14 -2.39 -0.02 -1.22 16
Total: 0.00 -31.15 335.56 -1.09 -32.24
By element:
Atomic # 1 Polarization: -23.78 SS G_CDS: -0.39 Total: -24.18 kcal
Atomic # 6 Polarization: 5.00 SS G_CDS: 3.05 Total: 8.05 kcal
Atomic # 7 Polarization: 4.10 SS G_CDS: -0.34 Total: 3.76 kcal
Atomic # 8 Polarization: -19.44 SS G_CDS: -5.20 Total: -24.65 kcal
Atomic # 14 Polarization: -4.55 SS G_CDS: 2.08 Total: -2.47 kcal
Atomic # 16 Polarization: 7.52 SS G_CDS: -0.28 Total: 7.24 kcal
Total: -31.15 -1.09 -32.24 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_40_16662492_2726874.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.150 kcal
(2) G-P(sol) polarization free energy of solvation -31.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.386 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds