Wall clock time and date at job start Mon Mar 8 2021 12:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33387 * 125.20638 * 2 1 4 4 C 1.50695 * 122.53782 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.47041 * 217.73085 * 4 3 2 6 6 Si 1.86301 * 109.47335 * 337.73495 * 4 3 2 7 7 C 1.38420 * 114.91878 * 180.20958 * 3 2 1 8 8 S 1.76201 * 122.53872 * 179.76351 * 7 3 2 9 9 O 1.42100 * 106.40192 * 289.54033 * 8 7 3 10 10 O 1.42100 * 106.40359 * 156.61719 * 8 7 3 11 11 N 1.65604 * 107.21562 * 43.07938 * 8 7 3 12 12 C 1.46503 * 120.00137 * 66.11890 * 11 8 7 13 13 H 1.09005 * 112.84876 * 11.57440 * 12 11 8 14 14 C 1.53774 * 113.61521 * 142.77552 * 12 11 8 15 15 C 1.53779 * 87.08269 * 140.06540 * 14 12 11 16 16 H 1.09004 * 113.62094 * 89.19504 * 15 14 12 17 17 C 1.53001 * 113.61720 * 220.02099 * 15 14 12 18 18 C 1.47200 * 109.47170 * 184.99579 * 17 15 14 19 19 N 7.76990 * 86.25207 * 58.96213 * 2 1 3 20 20 C 1.53778 * 113.68913 * 240.31158 * 12 11 8 21 21 C 1.33395 * 114.92332 * 359.49903 * 7 3 2 22 22 C 1.50695 * 125.20282 * 180.29026 * 21 7 3 23 23 S 1.75883 * 109.59081 * 0.26552 * 21 7 3 24 24 H 1.08997 * 109.47701 * 180.28345 * 1 2 3 25 25 H 1.09007 * 109.46842 * 300.28341 * 1 2 3 26 26 H 1.09004 * 109.47258 * 60.27619 * 1 2 3 27 27 H 1.09010 * 109.47303 * 97.73786 * 4 3 2 28 28 H 0.96705 * 113.99602 * 66.54643 * 5 4 3 29 29 H 1.48501 * 110.00083 * 180.02562 * 6 4 3 30 30 H 1.48502 * 109.99820 * 301.31868 * 6 4 3 31 31 H 0.96995 * 119.99821 * 246.10979 * 11 8 7 32 32 H 1.08995 * 113.61768 * 25.51796 * 14 12 11 33 33 H 1.08999 * 113.61347 * 254.60943 * 14 12 11 34 34 H 1.09000 * 109.46906 * 304.99571 * 17 15 14 35 35 H 1.08993 * 109.46980 * 64.99482 * 17 15 14 36 36 H 1.09001 * 113.61229 * 105.45417 * 20 12 11 37 37 H 1.08998 * 113.61353 * 334.55502 * 20 12 11 38 38 H 1.08998 * 109.47028 * 89.99748 * 22 21 7 39 39 H 1.09006 * 109.47157 * 209.99852 * 22 21 7 40 40 H 1.08997 * 109.47037 * 329.99889 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7053 2.4846 -0.0006 5 8 2.5114 3.3288 -0.8250 6 14 -0.0341 2.4436 -0.6667 7 6 3.6380 0.8427 -0.0046 8 16 4.8357 2.1350 -0.0116 9 8 4.7693 2.7367 -1.2972 10 8 6.0282 1.5798 0.5261 11 7 4.3255 3.2820 1.0685 12 6 4.2696 2.9682 2.4985 13 1 4.7717 2.0330 2.7465 14 6 4.6745 4.1437 3.4034 15 6 3.5309 3.7158 4.3381 16 1 3.8312 2.9860 5.0900 17 6 2.7501 4.8912 4.9294 18 6 1.7618 4.3868 5.8967 19 7 0.9991 3.9976 6.6432 20 6 2.8610 3.0903 3.1032 21 6 3.9750 -0.4480 0.0023 22 6 5.3860 -0.9773 0.0055 23 16 2.5208 -1.4373 0.0076 24 1 -0.3634 -1.0276 0.0051 25 1 -0.3633 0.5183 0.8875 26 1 -0.3634 0.5095 -0.8925 27 1 1.6953 2.8736 1.0177 28 1 2.4858 3.1014 -1.7646 29 1 -0.6080 3.8132 -0.6730 30 1 -0.0379 1.8855 -2.0428 31 1 4.0639 4.1616 0.7544 32 1 4.5213 5.1206 2.9449 33 1 5.6645 4.0332 3.8459 34 1 3.4395 5.5682 5.4339 35 1 2.2364 5.4251 4.1300 36 1 2.3869 2.1294 3.3032 37 1 2.2120 3.7793 2.5625 38 1 5.7258 -1.0995 1.0339 39 1 5.4137 -1.9409 -0.5033 40 1 6.0389 -0.2744 -0.5118 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16663508_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:29:17 Heat of formation + Delta-G solvation = -14.065702 kcal Electronic energy + Delta-G solvation = -27276.230706 eV Core-core repulsion = 23505.634830 eV Total energy + Delta-G solvation = -3770.595875 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54471 -40.12813 -38.40275 -37.47870 -37.08737 -36.87615 -34.68130 -34.30744 -30.86174 -30.58496 -28.12446 -26.52958 -25.77798 -23.95582 -23.34657 -20.86755 -20.63008 -19.91283 -19.11002 -18.57163 -18.12066 -17.79931 -17.11484 -16.93104 -16.58831 -16.21451 -15.98363 -15.86087 -15.34629 -15.01634 -14.83222 -14.69447 -14.47617 -14.18471 -13.96970 -13.90508 -13.70490 -13.51904 -13.41982 -13.26392 -13.24712 -13.08398 -12.99073 -12.88089 -12.78687 -12.66374 -12.41745 -12.09194 -11.74978 -11.61237 -11.47933 -11.35802 -11.12255 -10.80547 -10.19191 -9.93760 -9.44212 -4.73206 -0.56496 -0.40470 0.43519 0.74330 0.87225 1.32689 1.57429 1.89889 1.94354 1.96025 2.12891 2.79337 3.15808 3.23760 3.50358 3.57600 3.65547 3.77943 3.79547 3.96292 3.97070 4.02313 4.11997 4.26062 4.31149 4.42146 4.50782 4.52148 4.60169 4.66787 4.77942 4.85388 4.88243 4.91830 5.02559 5.03575 5.06335 5.16098 5.23126 5.24748 5.30953 5.69992 6.27854 6.42029 6.75549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.194 4.194 3 C -0.077 4.077 4 C -0.085 4.085 5 O -0.538 6.538 6 Si 0.725 3.275 7 C -0.681 4.681 8 S 2.727 3.273 9 O -0.984 6.984 10 O -0.991 6.991 11 N -1.078 6.078 12 C 0.113 3.887 13 H 0.108 0.892 14 C -0.127 4.127 15 C -0.099 4.099 16 H 0.099 0.901 17 C -0.014 4.014 18 C 0.235 3.765 19 N -0.515 5.515 20 C -0.158 4.158 21 C -0.075 4.075 22 C -0.117 4.117 23 S 0.176 5.824 24 H 0.114 0.886 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.389 0.611 29 H -0.278 1.278 30 H -0.311 1.311 31 H 0.431 0.569 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -0.613 1.623 2.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.312 4.312 3 C -0.088 4.088 4 C -0.196 4.196 5 O -0.348 6.348 6 Si 0.633 3.367 7 C -0.780 4.780 8 S 2.815 3.185 9 O -0.975 6.975 10 O -0.981 6.981 11 N -0.840 5.840 12 C 0.006 3.994 13 H 0.126 0.874 14 C -0.166 4.166 15 C -0.120 4.120 16 H 0.117 0.883 17 C -0.054 4.054 18 C -0.081 4.081 19 N -0.193 5.193 20 C -0.197 4.197 21 C -0.196 4.196 22 C -0.176 4.176 23 S 0.442 5.558 24 H 0.132 0.868 25 H 0.152 0.848 26 H 0.108 0.892 27 H 0.172 0.828 28 H 0.240 0.760 29 H -0.206 1.206 30 H -0.240 1.240 31 H 0.270 0.730 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.089 -2.404 2.236 4.508 hybrid contribution 0.782 1.450 -1.388 2.154 sum -2.307 -0.955 0.848 2.637 Atomic orbital electron populations 1.20483 0.85962 1.05412 1.04893 1.24583 1.01137 0.95097 1.10347 1.18621 0.90283 0.97128 1.02785 1.25250 1.05799 0.86765 1.01832 1.86420 1.67985 1.56846 1.23500 0.93554 0.79193 0.79965 0.84011 1.29531 1.12538 1.13251 1.22724 1.00700 0.72567 0.72617 0.72639 1.93503 1.87060 1.76150 1.40746 1.93559 1.44546 1.79698 1.80293 1.55082 1.84689 1.27474 1.16781 1.22479 0.98393 1.00507 0.78042 0.87374 1.23420 0.98938 0.99089 0.95172 1.22273 0.96508 0.97201 0.96014 0.88278 1.19666 0.92812 0.98209 0.94671 1.30016 0.93205 0.91840 0.93083 1.81320 1.13359 1.11319 1.13299 1.23841 0.96754 1.02829 0.96314 1.24724 1.01470 0.95494 0.97878 1.20969 0.87990 1.02898 1.05715 1.84299 0.94297 1.07981 1.69179 0.86784 0.84791 0.89190 0.82802 0.76016 1.20639 1.23995 0.73021 0.86885 0.89927 0.84436 0.84508 0.90587 0.87099 0.87586 0.88447 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.03 7.96 71.24 0.57 1.60 16 2 C -0.19 0.56 6.23 24.59 0.15 0.71 16 3 C -0.08 0.06 5.30 -20.92 -0.11 -0.05 16 4 C -0.08 0.29 2.10 71.23 0.15 0.44 16 5 O -0.54 -0.04 7.79 -126.63 -0.99 -1.03 16 6 Si 0.72 -2.49 25.45 68.60 1.75 -0.74 16 7 C -0.68 -1.64 5.73 21.22 0.12 -1.51 16 8 S 2.73 11.92 4.57 -56.49 -0.26 11.66 16 9 O -0.98 -10.18 15.45 -118.86 -1.84 -12.01 16 10 O -0.99 -8.62 14.54 -128.00 -1.86 -10.48 16 11 N -1.08 3.70 3.96 -167.20 -0.66 3.03 16 12 C 0.11 -0.80 4.43 45.51 0.20 -0.60 16 13 H 0.11 -0.59 7.75 -2.38 -0.02 -0.61 16 14 C -0.13 1.44 7.43 31.12 0.23 1.67 16 15 C -0.10 1.19 3.62 -10.27 -0.04 1.15 16 16 H 0.10 -1.05 8.12 -2.38 -0.02 -1.07 16 17 C -0.01 0.19 5.54 28.79 0.16 0.34 16 18 C 0.23 -0.58 15.42 89.44 1.38 0.80 16 19 N -0.51 -3.62 18.54 20.01 0.37 -3.25 16 20 C -0.16 1.67 6.09 31.12 0.19 1.86 16 21 C -0.07 -0.14 6.49 24.59 0.16 0.02 16 22 C -0.12 -0.10 9.11 71.23 0.65 0.55 16 23 S 0.18 -0.31 23.31 -56.49 -1.32 -1.63 16 24 H 0.11 -1.37 8.14 -2.39 -0.02 -1.39 16 25 H 0.13 -1.99 6.81 -2.38 -0.02 -2.01 16 26 H 0.09 -0.73 3.89 -2.39 -0.01 -0.73 16 27 H 0.15 -1.29 4.82 -2.38 -0.01 -1.30 16 28 H 0.39 0.24 8.05 -74.05 -0.60 -0.36 16 29 H -0.28 -0.70 7.11 99.48 0.71 0.00 16 30 H -0.31 -1.13 6.93 99.48 0.69 -0.44 16 31 H 0.43 -2.51 8.09 -96.75 -0.78 -3.30 16 32 H 0.11 -1.62 8.10 -2.39 -0.02 -1.64 16 33 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.14 -2.36 8.14 -2.39 -0.02 -2.38 16 35 H 0.14 -2.41 7.84 -2.39 -0.02 -2.43 16 36 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.11 -1.48 6.59 -2.39 -0.02 -1.50 16 38 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.10 -0.31 8.14 -2.38 -0.02 -0.33 16 40 H 0.08 0.32 6.24 -2.39 -0.01 0.30 16 Total: 0.00 -27.15 338.25 -1.23 -28.38 By element: Atomic # 1 Polarization: -20.68 SS G_CDS: -0.24 Total: -20.92 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 3.81 Total: 6.98 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -0.29 Total: -0.22 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -4.68 Total: -23.52 kcal Atomic # 14 Polarization: -2.49 SS G_CDS: 1.75 Total: -0.74 kcal Atomic # 16 Polarization: 11.61 SS G_CDS: -1.58 Total: 10.03 kcal Total: -27.15 -1.23 -28.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16663508_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.318 kcal (2) G-P(sol) polarization free energy of solvation -27.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds