Wall clock time and date at job start Mon Mar 8 2021 12:12:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34231 * 117.00202 * 2 1
4 4 O 1.20827 * 119.99338 * 359.97438 * 3 2 1
5 5 C 1.50698 * 120.00173 * 179.97438 * 3 2 1
6 6 H 1.08996 * 109.46947 * 299.99786 * 5 3 2
7 7 C 1.53001 * 109.46840 * 59.99832 * 5 3 2
8 8 C 1.53008 * 109.46779 * 179.97438 * 7 5 3
9 9 C 1.52992 * 109.47186 * 300.00189 * 8 7 5
10 10 F 1.39907 * 109.47182 * 300.00148 * 9 8 7
11 11 C 1.52996 * 109.47406 * 180.02562 * 9 8 7
12 12 N 1.46498 * 109.47030 * 64.99455 * 11 9 8
13 13 S 1.65608 * 119.99890 * 163.68459 * 12 11 9
14 14 O 1.42099 * 106.40213 * 177.85160 * 13 12 11
15 15 O 1.42106 * 106.39864 * 310.77284 * 13 12 11
16 16 C 1.76202 * 107.21744 * 64.31037 * 13 12 11
17 17 C 1.38213 * 120.00180 * 64.24366 * 16 13 12
18 18 C 1.50704 * 119.99721 * 359.97438 * 17 16 13
19 19 O 1.42899 * 109.47087 * 284.08226 * 18 17 16
20 20 Si 1.86301 * 109.47050 * 164.08071 * 18 17 16
21 21 C 1.38251 * 120.00158 * 179.74554 * 17 16 13
22 22 C 1.38214 * 119.99955 * 0.52734 * 21 17 16
23 23 C 1.38265 * 119.99723 * 359.74436 * 22 21 17
24 24 C 1.38204 * 119.99939 * 359.97438 * 23 22 21
25 25 C 1.53004 * 109.47446 * 59.99649 * 9 8 7
26 26 C 1.52995 * 109.47105 * 300.00106 * 25 9 8
27 27 H 1.08999 * 109.47202 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.47051 * 60.00961 * 1 2 3
29 29 H 1.08997 * 109.47640 * 300.00431 * 1 2 3
30 30 H 1.08999 * 109.47416 * 299.99623 * 7 5 3
31 31 H 1.08996 * 109.47387 * 60.00224 * 7 5 3
32 32 H 1.08997 * 109.46923 * 179.97438 * 8 7 5
33 33 H 1.08996 * 109.46847 * 60.00054 * 8 7 5
34 34 H 1.09000 * 109.47565 * 185.00145 * 11 9 8
35 35 H 1.09007 * 109.46890 * 304.99464 * 11 9 8
36 36 H 0.96998 * 120.00276 * 343.68483 * 12 11 9
37 37 H 1.09002 * 109.46985 * 44.08171 * 18 17 16
38 38 H 0.96702 * 114.00374 * 299.99807 * 19 18 17
39 39 H 1.48502 * 109.99805 * 179.97438 * 20 18 17
40 40 H 1.48501 * 109.99959 * 301.32088 * 20 18 17
41 41 H 1.08000 * 120.00198 * 180.29724 * 21 17 16
42 42 H 1.08001 * 120.00041 * 179.77560 * 22 21 17
43 43 H 1.07999 * 119.99377 * 179.97438 * 23 22 21
44 44 H 1.08006 * 119.99706 * 179.97438 * 24 23 22
45 45 H 1.08997 * 109.47033 * 179.97438 * 25 9 8
46 46 H 1.09007 * 109.46580 * 60.00278 * 25 9 8
47 47 H 1.08998 * 109.47483 * 299.99368 * 26 25 9
48 48 H 1.09002 * 109.46775 * 179.97438 * 26 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2748 0.0006
6 1 3.9557 0.7810 0.8908
7 6 4.1138 0.5810 -1.2483
8 6 5.6418 0.6616 -1.2480
9 6 6.0751 2.1289 -1.2485
10 9 5.5748 2.7625 -2.3911
11 6 7.6029 2.2096 -1.2488
12 7 8.1210 1.6520 -2.5006
13 16 9.6804 1.9637 -2.9630
14 8 9.8898 1.2509 -4.1743
15 8 9.8602 3.3685 -2.8467
16 6 10.7379 1.2257 -1.7622
17 6 10.7494 -0.1471 -1.6019
18 6 9.8571 -1.0126 -2.4538
19 8 8.5122 -0.9224 -1.9793
20 14 10.4324 -2.7820 -2.3572
21 6 11.5830 -0.7265 -0.6634
22 6 12.3968 0.0678 0.1221
23 6 12.3812 1.4415 -0.0344
24 6 11.5521 2.0202 -0.9766
25 6 5.5275 2.8228 0.0004
26 6 3.9996 2.7422 0.0000
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5137 -0.8901
29 1 -0.3634 0.5139 0.8899
30 1 3.8048 -0.4643 -1.2482
31 1 3.7245 1.0748 -2.1385
32 1 6.0319 0.1669 -2.1375
33 1 6.0315 0.1680 -0.3578
34 1 7.9118 3.2511 -1.1595
35 1 7.9970 1.6403 -0.4068
36 1 7.5508 1.1003 -3.0585
37 1 9.9009 -0.6722 -3.4884
38 1 8.3982 -1.2099 -1.0630
39 1 9.5601 -3.6459 -3.1926
40 1 11.8404 -2.8841 -2.8180
41 1 11.5955 -1.7995 -0.5415
42 1 13.0454 -0.3846 0.8578
43 1 13.0168 2.0621 0.5797
44 1 11.5396 3.0933 -1.0985
45 1 5.8365 3.8680 0.0002
46 1 5.9172 2.3292 0.8907
47 1 3.6099 3.2359 -0.8902
48 1 3.6096 3.2362 0.8900
There are 69 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 69
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_40_16738322_2726874.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 12:12:57
Heat of formation + Delta-G solvation = -212.976573 kcal
Electronic energy + Delta-G solvation = -36325.626236 eV
Core-core repulsion = 31388.548764 eV
Total energy + Delta-G solvation = -4937.077472 eV
No. of doubly occupied orbitals = 69
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 388.128 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-48.65133 -41.69908 -40.63919 -38.95892 -38.58625 -37.60372 -37.41733 -37.08107
-36.12462 -32.75974 -32.34101 -32.29953 -31.70692 -28.87912 -26.96201 -26.80788
-24.38329 -23.92918 -23.65656 -22.72981 -21.60943 -20.76098 -20.53015 -19.21798
-18.67566 -18.61197 -17.98161 -17.80867 -17.62819 -17.51902 -16.85786 -16.81037
-16.54702 -16.30299 -15.97322 -15.79018 -15.58625 -15.14801 -14.96723 -14.93538
-14.88261 -14.57937 -14.27747 -14.14960 -14.03115 -13.77078 -13.65415 -13.54051
-13.32101 -13.30766 -13.28504 -13.13388 -13.01377 -12.92384 -12.77676 -12.66476
-12.27319 -12.16860 -12.00424 -11.85063 -11.76119 -11.59186 -11.53296 -11.17063
-11.01837 -10.51690 -10.41430 -10.37295 -10.00062 -5.02375 -0.70158 -0.26024
0.19272 1.12514 1.25134 1.67540 1.73829 1.93051 2.03076 2.41559
2.66529 3.22237 3.37566 3.42046 3.45224 3.61261 3.62507 3.65266
3.78567 3.85587 3.95269 4.02118 4.06713 4.24203 4.27671 4.28597
4.29406 4.32023 4.32819 4.43581 4.49216 4.51523 4.61413 4.64640
4.69017 4.78810 4.83013 4.84414 4.87807 5.01671 5.05809 5.09391
5.16633 5.22430 5.23079 5.30968 5.35827 5.37194 5.46844 5.80929
6.08468 6.67802 6.86209
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.359 6.359
3 C 0.459 3.541
4 O -0.546 6.546
5 C -0.073 4.073
6 H 0.148 0.852
7 C -0.110 4.110
8 C -0.131 4.131
9 C 0.110 3.890
10 F -0.225 7.225
11 C 0.099 3.901
12 N -1.088 6.088
13 S 2.703 3.297
14 O -0.997 6.997
15 O -0.996 6.996
16 C -0.664 4.664
17 C -0.020 4.020
18 C -0.129 4.129
19 O -0.527 6.527
20 Si 0.799 3.201
21 C -0.135 4.135
22 C -0.051 4.051
23 C -0.137 4.137
24 C -0.038 4.038
25 C -0.133 4.133
26 C -0.105 4.105
27 H 0.130 0.870
28 H 0.055 0.945
29 H 0.060 0.940
30 H 0.096 0.904
31 H 0.046 0.954
32 H 0.091 0.909
33 H 0.129 0.871
34 H 0.078 0.922
35 H 0.123 0.877
36 H 0.427 0.573
37 H 0.119 0.881
38 H 0.400 0.600
39 H -0.295 1.295
40 H -0.299 1.299
41 H 0.165 0.835
42 H 0.167 0.833
43 H 0.155 0.845
44 H 0.140 0.860
45 H 0.081 0.919
46 H 0.126 0.874
47 H 0.047 0.953
48 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.586 -7.900 11.489 14.181
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.275 6.275
3 C 0.304 3.696
4 O -0.436 6.436
5 C -0.092 4.092
6 H 0.165 0.835
7 C -0.148 4.148
8 C -0.168 4.168
9 C 0.091 3.909
10 F -0.206 7.206
11 C -0.027 4.027
12 N -0.852 5.852
13 S 2.796 3.204
14 O -0.987 6.987
15 O -0.986 6.986
16 C -0.754 4.754
17 C -0.022 4.022
18 C -0.238 4.238
19 O -0.335 6.335
20 Si 0.705 3.295
21 C -0.153 4.153
22 C -0.069 4.069
23 C -0.155 4.155
24 C -0.058 4.058
25 C -0.171 4.171
26 C -0.143 4.143
27 H 0.148 0.852
28 H 0.074 0.926
29 H 0.079 0.921
30 H 0.114 0.886
31 H 0.065 0.935
32 H 0.109 0.891
33 H 0.147 0.853
34 H 0.097 0.903
35 H 0.141 0.859
36 H 0.266 0.734
37 H 0.136 0.864
38 H 0.251 0.749
39 H -0.223 1.223
40 H -0.227 1.227
41 H 0.182 0.818
42 H 0.185 0.815
43 H 0.173 0.827
44 H 0.157 0.843
45 H 0.099 0.901
46 H 0.144 0.856
47 H 0.066 0.934
48 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 2.881 -7.459 9.781 12.634
hybrid contribution -0.583 0.724 -0.795 1.223
sum 2.298 -6.735 8.986 11.463
Atomic orbital electron populations
1.23496 0.75363 1.05569 1.02173 1.86500 1.24447 1.33024 1.83565
1.24529 0.93319 0.80936 0.70819 1.90678 1.68312 1.37717 1.46879
1.21281 0.84762 0.99309 1.03839 0.83454 1.21508 0.96563 1.01801
0.94933 1.22185 0.94278 0.93256 1.07069 1.21425 0.92170 0.94366
0.82972 1.92844 1.89161 1.84438 1.54160 1.22060 0.93306 1.00465
0.86861 1.54879 1.28877 1.67237 1.34162 1.01142 0.73295 0.72651
0.73276 1.93510 1.85701 1.74425 1.45090 1.93539 1.86234 1.31685
1.87152 1.30360 1.19439 1.04213 1.21357 1.20066 0.95526 0.91672
0.94920 1.25803 0.86629 1.11437 0.99930 1.86528 1.21673 1.89609
1.35696 0.94195 0.75386 0.71698 0.88240 1.21470 0.96625 1.01229
0.95948 1.21926 0.95102 0.93438 0.96461 1.21693 0.99158 0.96272
0.98421 1.21198 0.92181 1.00256 0.92119 1.22147 0.94283 1.02784
0.97922 1.21367 0.96102 0.93869 1.02924 0.85168 0.92648 0.92080
0.88553 0.93469 0.89059 0.85269 0.90345 0.85915 0.73449 0.86398
0.74867 1.22295 1.22711 0.81776 0.81515 0.82688 0.84254 0.90054
0.85587 0.93435 0.90542
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16
2 O -0.36 -0.59 10.47 -51.42 -0.54 -1.13 16
3 C 0.46 1.67 7.25 71.24 0.52 2.19 16
4 O -0.55 -6.27 15.73 21.96 0.35 -5.92 16
5 C -0.07 0.31 2.63 -11.54 -0.03 0.28 16
6 H 0.15 -1.64 8.14 -2.39 -0.02 -1.65 16
7 C -0.11 0.58 5.01 30.60 0.15 0.73 16
8 C -0.13 1.25 4.87 30.59 0.15 1.39 16
9 C 0.11 -0.56 0.88 -10.80 -0.01 -0.57 16
10 F -0.23 -1.02 15.60 44.97 0.70 -0.32 16
11 C 0.10 -0.60 5.40 86.38 0.47 -0.14 16
12 N -1.09 1.41 3.97 -187.49 -0.74 0.67 16
13 S 2.70 15.23 5.07 -56.49 -0.29 14.94 16
14 O -1.00 -12.42 15.53 -128.00 -1.99 -14.41 16
15 O -1.00 -11.85 16.45 -128.00 -2.11 -13.95 16
16 C -0.66 -0.21 5.87 22.27 0.13 -0.08 16
17 C -0.02 0.07 5.25 -19.87 -0.10 -0.03 16
18 C -0.13 0.44 2.03 71.24 0.14 0.58 16
19 O -0.53 5.06 10.59 -148.98 -1.58 3.48 16
20 Si 0.80 -4.18 29.93 68.60 2.05 -2.12 16
21 C -0.13 1.10 8.66 22.27 0.19 1.29 16
22 C -0.05 0.47 10.05 22.27 0.22 0.69 16
23 C -0.14 0.84 10.05 22.27 0.22 1.06 16
24 C -0.04 0.05 9.55 22.27 0.21 0.26 16
25 C -0.13 0.97 5.00 30.59 0.15 1.12 16
26 C -0.10 0.19 4.37 30.59 0.13 0.32 16
27 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16
28 H 0.05 0.03 8.13 -2.38 -0.02 0.01 16
29 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16
30 H 0.10 -0.69 8.11 -2.39 -0.02 -0.70 16
31 H 0.05 0.04 7.80 -2.39 -0.02 0.02 16
32 H 0.09 -0.78 6.85 -2.39 -0.02 -0.80 16
33 H 0.13 -2.23 8.14 -2.39 -0.02 -2.25 16
34 H 0.08 -0.27 7.74 -2.39 -0.02 -0.29 16
35 H 0.12 -1.73 8.14 -2.38 -0.02 -1.75 16
36 H 0.43 -0.80 6.92 -96.74 -0.67 -1.47 16
37 H 0.12 0.41 5.37 -2.39 -0.01 0.40 16
38 H 0.40 -7.85 8.70 -74.06 -0.64 -8.50 16
39 H -0.30 -0.72 7.11 99.48 0.71 -0.02 16
40 H -0.30 -0.58 7.11 99.48 0.71 0.13 16
41 H 0.17 -2.33 5.15 -2.91 -0.01 -2.34 16
42 H 0.17 -2.52 8.06 -2.91 -0.02 -2.54 16
43 H 0.16 -1.61 8.06 -2.91 -0.02 -1.63 16
44 H 0.14 -0.11 7.34 -2.91 -0.02 -0.13 16
45 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16
46 H 0.13 -1.83 8.14 -2.38 -0.02 -1.85 16
47 H 0.05 0.24 7.76 -2.39 -0.02 0.22 16
48 H 0.08 -0.08 8.10 -2.39 -0.02 -0.10 16
Total: 0.00 -34.59 396.04 -0.65 -35.24
By element:
Atomic # 1 Polarization: -26.48 SS G_CDS: -0.26 Total: -26.74 kcal
Atomic # 6 Polarization: 6.51 SS G_CDS: 3.75 Total: 10.27 kcal
Atomic # 7 Polarization: 1.41 SS G_CDS: -0.74 Total: 0.67 kcal
Atomic # 8 Polarization: -26.08 SS G_CDS: -5.86 Total: -31.94 kcal
Atomic # 9 Polarization: -1.02 SS G_CDS: 0.70 Total: -0.32 kcal
Atomic # 14 Polarization: -4.18 SS G_CDS: 2.05 Total: -2.12 kcal
Atomic # 16 Polarization: 15.23 SS G_CDS: -0.29 Total: 14.94 kcal
Total: -34.59 -0.65 -35.24 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_40_16738322_2726874.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -177.734 kcal
(2) G-P(sol) polarization free energy of solvation -34.593 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) -212.977 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds