Wall clock time and date at job start Mon Mar 8 2021 09:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33391 * 125.20573 * 2 1 4 4 C 1.50693 * 122.53945 * 359.96999 * 3 2 1 5 5 O 1.42901 * 109.47140 * 317.27243 * 4 3 2 6 6 Si 1.86301 * 109.47371 * 77.27226 * 4 3 2 7 7 C 1.38426 * 114.91880 * 180.20213 * 3 2 1 8 8 S 1.76191 * 122.53737 * 179.75851 * 7 3 2 9 9 O 1.42102 * 106.40283 * 154.68788 * 8 7 3 10 10 O 1.42095 * 106.40345 * 21.76994 * 8 7 3 11 11 N 1.65603 * 107.22196 * 268.22501 * 8 7 3 12 12 C 1.46503 * 119.99693 * 63.78092 * 11 8 7 13 13 H 1.08998 * 109.47076 * 24.24345 * 12 11 8 14 14 C 1.52997 * 109.47182 * 144.24599 * 12 11 8 15 15 C 1.53002 * 109.46795 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47319 * 299.99664 * 15 14 12 17 17 H 1.09004 * 109.47616 * 300.00318 * 16 15 14 18 18 C 1.53000 * 109.47260 * 180.02562 * 16 15 14 19 19 F 1.39900 * 109.47245 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.46913 * 60.00408 * 16 15 14 21 21 C 1.52999 * 109.47261 * 299.99676 * 20 16 15 22 22 C 1.33396 * 114.92085 * 359.49899 * 7 3 2 23 23 C 1.50699 * 125.19975 * 180.24766 * 22 7 3 24 24 S 1.75882 * 109.59279 * 0.26239 * 22 7 3 25 25 H 1.08997 * 109.47502 * 185.51436 * 1 2 3 26 26 H 1.08999 * 109.46845 * 305.51674 * 1 2 3 27 27 H 1.08999 * 109.46898 * 65.50956 * 1 2 3 28 28 H 1.09002 * 109.46963 * 197.27150 * 4 3 2 29 29 H 0.96701 * 114.00353 * 301.18498 * 5 4 3 30 30 H 1.48498 * 110.00097 * 63.83657 * 6 4 3 31 31 H 1.48499 * 110.00036 * 185.15972 * 6 4 3 32 32 H 0.96993 * 120.00255 * 243.77795 * 11 8 7 33 33 H 1.08998 * 109.47323 * 59.99897 * 14 12 11 34 34 H 1.08994 * 109.47123 * 299.99588 * 14 12 11 35 35 H 1.08998 * 109.47188 * 59.99914 * 15 14 12 36 36 H 1.09002 * 109.46730 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.46906 * 300.00040 * 18 16 15 38 38 H 1.08994 * 109.47343 * 60.00330 * 18 16 15 39 39 H 1.09006 * 109.47502 * 180.02562 * 20 16 15 40 40 H 1.08998 * 109.47323 * 59.99917 * 20 16 15 41 41 H 1.09000 * 109.47651 * 300.00233 * 21 20 16 42 42 H 1.09002 * 109.47196 * 179.97438 * 21 20 16 43 43 H 1.08997 * 109.46841 * 89.99784 * 23 22 7 44 44 H 1.08998 * 109.46263 * 209.99755 * 23 22 7 45 45 H 1.08994 * 109.47132 * 329.99349 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2761 1.0899 0.0000 4 6 1.7053 2.4846 -0.0007 5 8 0.6094 2.5504 -0.9153 6 14 1.1112 2.9134 1.7122 7 6 3.6381 0.8427 -0.0044 8 16 4.8357 2.1350 -0.0115 9 8 6.0144 1.5929 0.5682 10 8 4.1818 3.2909 0.4940 11 7 5.1992 2.4580 -1.5946 12 6 4.1646 2.9775 -2.4923 13 1 3.3955 3.4817 -1.9071 14 6 4.7919 3.9702 -3.4730 15 6 3.7115 4.5123 -4.4110 16 6 3.0838 3.3542 -5.1892 17 1 3.8531 2.8501 -5.7741 18 6 2.0038 3.8964 -6.1276 19 9 1.4294 2.8374 -6.8388 20 6 2.4564 2.3615 -4.2085 21 6 3.5368 1.8194 -3.2705 22 6 3.9751 -0.4479 0.0026 23 6 5.3861 -0.9773 0.0051 24 16 2.5209 -1.4372 0.0079 25 1 -0.3634 -1.0229 0.0987 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 2.4761 3.1924 -0.3057 29 1 0.8422 2.3209 -1.8254 30 1 2.2576 2.9391 2.6558 31 1 0.4344 4.2351 1.6990 32 1 6.0970 2.3032 -1.9274 33 1 5.5610 3.4661 -4.0582 34 1 5.2395 4.7950 -2.9186 35 1 2.9421 5.0163 -3.8261 36 1 4.1585 5.2192 -5.1100 37 1 1.2343 4.4007 -5.5430 38 1 2.4510 4.6034 -6.8263 39 1 2.0096 1.5362 -4.7628 40 1 1.6870 2.8656 -3.6236 41 1 4.3062 1.3153 -3.8553 42 1 3.0897 1.1125 -2.5715 43 1 5.7265 -1.0992 1.0333 44 1 5.4133 -1.9409 -0.5035 45 1 6.0387 -0.2745 -0.5128 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16769146_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:27:20 Heat of formation + Delta-G solvation = -136.616462 kcal Electronic energy + Delta-G solvation = -31586.718710 eV Core-core repulsion = 27352.157614 eV Total energy + Delta-G solvation = -4234.561097 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.101 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.52706 -40.53357 -39.83474 -38.71664 -37.20873 -37.13975 -35.79642 -34.03830 -31.81773 -31.20695 -30.79261 -28.03120 -26.30839 -25.82982 -23.74804 -23.23579 -22.46526 -21.25894 -20.75666 -20.01481 -19.06274 -18.61018 -18.14414 -17.77979 -16.98224 -16.75271 -16.62710 -16.45171 -16.21719 -15.96892 -15.46198 -15.23959 -15.13589 -14.95149 -14.76780 -14.48410 -14.26853 -14.11491 -13.99457 -13.91395 -13.72753 -13.50397 -13.43575 -13.31243 -13.18765 -12.92926 -12.76813 -12.70780 -12.56815 -12.47941 -12.33657 -12.12057 -11.81998 -11.77798 -11.55644 -11.43154 -11.39948 -11.16061 -10.97715 -10.51297 -9.94456 -9.39247 -5.01654 -0.89860 -0.41862 0.41858 0.72010 0.81261 1.34551 1.65204 1.86908 1.99962 2.50072 3.07915 3.43196 3.49175 3.52083 3.65475 3.68583 3.79535 3.86288 3.97527 4.08651 4.09156 4.17550 4.23546 4.25632 4.33758 4.37154 4.42245 4.50491 4.51044 4.61868 4.63987 4.71262 4.82218 4.86307 4.89164 4.92316 4.94413 5.08053 5.10286 5.15749 5.16779 5.22080 5.23249 5.36116 5.38507 5.47264 5.93216 6.60308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.096 4.096 4 C -0.073 4.073 5 O -0.530 6.530 6 Si 0.783 3.217 7 C -0.692 4.692 8 S 2.705 3.295 9 O -0.978 6.978 10 O -0.984 6.984 11 N -1.099 6.099 12 C 0.143 3.857 13 H 0.084 0.916 14 C -0.120 4.120 15 C -0.110 4.110 16 C -0.117 4.117 17 H 0.082 0.918 18 C 0.056 3.944 19 F -0.237 7.237 20 C -0.114 4.114 21 C -0.135 4.135 22 C -0.057 4.057 23 C -0.117 4.117 24 S 0.184 5.816 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.374 0.626 30 H -0.288 1.288 31 H -0.281 1.281 32 H 0.429 0.571 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -3.034 -4.599 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.277 4.277 3 C -0.107 4.107 4 C -0.185 4.185 5 O -0.337 6.337 6 Si 0.687 3.313 7 C -0.794 4.794 8 S 2.796 3.204 9 O -0.968 6.968 10 O -0.973 6.973 11 N -0.861 5.861 12 C 0.036 3.964 13 H 0.102 0.898 14 C -0.160 4.160 15 C -0.149 4.149 16 C -0.136 4.136 17 H 0.100 0.900 18 C 0.001 3.999 19 F -0.219 7.219 20 C -0.152 4.152 21 C -0.174 4.174 22 C -0.179 4.179 23 C -0.175 4.175 24 S 0.451 5.549 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.223 0.777 30 H -0.215 1.215 31 H -0.207 1.207 32 H 0.267 0.733 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.421 -3.467 -2.605 4.564 hybrid contribution 1.534 1.202 -1.499 2.458 sum 0.112 -2.266 -4.104 4.690 Atomic orbital electron populations 1.20563 0.85169 1.03506 1.05036 1.24679 1.01529 0.94113 1.07335 1.18448 0.90046 0.96986 1.05180 1.25488 0.93505 0.93622 1.05877 1.86732 1.33382 1.91907 1.21639 0.93514 0.81536 0.82854 0.73436 1.29230 1.11669 1.13234 1.25285 1.01220 0.72768 0.73425 0.73025 1.93570 1.47036 1.80147 1.76017 1.93478 1.76463 1.48947 1.78460 1.55339 1.21005 1.81017 1.28768 1.21124 0.89016 0.94874 0.91345 0.89803 1.21786 0.98840 0.98457 0.96886 1.21486 0.98203 0.96993 0.98198 1.21759 0.97740 0.97389 0.96669 0.89973 1.22281 0.96503 0.86532 0.94541 1.92733 1.86907 1.61142 1.81089 1.21561 0.97679 0.99068 0.96904 1.22074 0.99139 0.97423 0.98787 1.24700 1.01735 0.94960 0.96478 1.20985 0.87715 1.03440 1.05401 1.84374 0.94067 1.07898 1.68577 0.90330 0.89011 0.88405 0.88356 0.77694 1.21549 1.20714 0.73309 0.89857 0.90841 0.90796 0.89782 0.89542 0.89561 0.91184 0.90575 0.90382 0.91261 0.88529 0.87832 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.43 8.87 71.24 0.63 1.07 16 2 C -0.16 0.20 6.18 24.59 0.15 0.36 16 3 C -0.10 -0.16 3.50 -20.92 -0.07 -0.23 16 4 C -0.07 -0.24 2.21 71.23 0.16 -0.08 16 5 O -0.53 0.49 10.42 -148.98 -1.55 -1.07 16 6 Si 0.78 5.22 30.40 68.60 2.09 7.31 16 7 C -0.69 -1.84 4.89 21.22 0.10 -1.74 16 8 S 2.70 13.62 5.25 -56.49 -0.30 13.32 16 9 O -0.98 -9.03 15.18 -128.00 -1.94 -10.98 16 10 O -0.98 -10.67 13.31 -128.00 -1.70 -12.37 16 11 N -1.10 2.87 5.47 -169.38 -0.93 1.94 16 12 C 0.14 -0.62 2.78 44.99 0.12 -0.50 16 13 H 0.08 -0.22 5.72 -2.39 -0.01 -0.24 16 14 C -0.12 0.79 5.46 30.59 0.17 0.96 16 15 C -0.11 0.87 5.20 30.59 0.16 1.03 16 16 C -0.12 0.80 2.51 -10.80 -0.03 0.77 16 17 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 18 C 0.06 -0.29 6.96 71.98 0.50 0.21 16 19 F -0.24 -0.51 16.84 44.97 0.76 0.25 16 20 C -0.11 0.75 5.08 30.59 0.16 0.90 16 21 C -0.14 0.82 5.53 30.60 0.17 0.99 16 22 C -0.06 -0.02 6.49 24.59 0.16 0.14 16 23 C -0.12 0.22 9.11 71.24 0.65 0.87 16 24 S 0.18 -0.41 23.31 -56.49 -1.32 -1.73 16 25 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H 0.09 -0.53 6.37 -2.39 -0.02 -0.55 16 27 H 0.10 -0.63 7.15 -2.39 -0.02 -0.64 16 28 H 0.10 0.47 3.02 -2.39 -0.01 0.47 16 29 H 0.37 -2.49 7.78 -74.06 -0.58 -3.06 16 30 H -0.29 -3.93 7.11 99.48 0.71 -3.22 16 31 H -0.28 -3.24 7.11 99.48 0.71 -2.53 16 32 H 0.43 -2.86 8.84 -96.75 -0.86 -3.72 16 33 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.07 -0.32 7.80 -2.38 -0.02 -0.34 16 40 H 0.08 -0.63 6.86 -2.39 -0.02 -0.64 16 41 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.07 -0.35 6.43 -2.39 -0.02 -0.37 16 43 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.09 -0.16 6.33 -2.39 -0.02 -0.17 16 Total: 0.00 -17.69 365.02 -2.22 -19.91 By element: Atomic # 1 Polarization: -20.96 SS G_CDS: -0.35 Total: -21.32 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 3.03 Total: 4.74 kcal Atomic # 7 Polarization: 2.87 SS G_CDS: -0.93 Total: 1.94 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -5.20 Total: -24.42 kcal Atomic # 9 Polarization: -0.51 SS G_CDS: 0.76 Total: 0.25 kcal Atomic # 14 Polarization: 5.22 SS G_CDS: 2.09 Total: 7.31 kcal Atomic # 16 Polarization: 13.20 SS G_CDS: -1.61 Total: 11.59 kcal Total: -17.69 -2.22 -19.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16769146_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.710 kcal (2) G-P(sol) polarization free energy of solvation -17.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds