Wall clock time and date at job start Mon Mar 8 2021 09:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86302 * 109.47042 * 2 1 4 4 C 1.86299 * 109.47129 * 239.99877 * 2 1 3 5 5 C 1.86299 * 109.46984 * 119.99613 * 2 1 3 6 6 C 1.53002 * 109.46876 * 59.99987 * 5 2 1 7 7 C 1.53005 * 109.46904 * 179.97438 * 6 5 2 8 8 S 1.81397 * 109.46955 * 179.97438 * 7 6 5 9 9 O 1.42101 * 110.53951 * 68.37979 * 8 7 6 10 10 O 1.42095 * 110.54637 * 291.62708 * 8 7 6 11 11 O 1.52204 * 104.44964 * 179.97438 * 8 7 6 12 12 C 1.35902 * 113.99492 * 75.00330 * 11 8 7 13 13 C 1.38595 * 120.02260 * 270.27137 * 12 11 8 14 14 C 1.38766 * 119.87667 * 180.27640 * 13 12 11 15 15 N 1.40190 * 120.03498 * 179.77295 * 14 13 12 16 16 C 1.35226 * 126.04790 * 184.69262 * 15 14 13 17 17 C 1.35324 * 107.71299 * 179.87318 * 16 15 14 18 18 C 1.39922 * 107.92626 * 0.38635 * 17 16 15 19 19 N 1.30875 * 108.24710 * 359.75960 * 18 17 16 20 20 C 1.38846 * 119.92625 * 359.74598 * 14 13 12 21 21 C 1.38172 * 120.04239 * 359.97438 * 20 14 13 22 22 C 1.38171 * 120.12142 * 0.02562 * 21 20 14 23 23 C 1.50697 * 119.96252 * 180.02562 * 22 21 20 24 24 O 1.42906 * 109.46831 * 254.99881 * 23 22 21 25 25 Si 1.86300 * 109.47007 * 14.99270 * 23 22 21 26 26 H 1.48503 * 109.46942 * 60.00611 * 25 23 22 27 27 H 1.48503 * 109.47276 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47372 * 300.00074 * 25 23 22 29 29 H 1.09002 * 109.46978 * 300.00595 * 1 2 3 30 30 H 1.09004 * 109.47146 * 59.99677 * 1 2 3 31 31 H 1.08993 * 109.47209 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47045 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46793 * 299.99731 * 3 2 1 34 34 H 1.08993 * 109.47640 * 59.99568 * 3 2 1 35 35 H 1.09006 * 109.46471 * 299.99823 * 4 2 1 36 36 H 1.08996 * 109.47052 * 60.00062 * 4 2 1 37 37 H 1.08997 * 109.46772 * 180.02562 * 4 2 1 38 38 H 1.09002 * 109.47093 * 299.99722 * 5 2 1 39 39 H 1.08995 * 109.46956 * 179.97438 * 5 2 1 40 40 H 1.08998 * 109.47016 * 60.00550 * 6 5 2 41 41 H 1.08995 * 109.47201 * 299.99695 * 6 5 2 42 42 H 1.09006 * 109.46755 * 60.00390 * 7 6 5 43 43 H 1.08997 * 109.47533 * 300.00454 * 7 6 5 44 44 H 1.07999 * 120.06455 * 0.02562 * 13 12 11 45 45 H 1.07998 * 126.14958 * 359.97438 * 16 15 14 46 46 H 1.07991 * 126.04135 * 180.16539 * 17 16 15 47 47 H 1.08004 * 125.87990 * 179.73698 * 18 17 16 48 48 H 1.08002 * 119.98213 * 179.97438 * 20 14 13 49 49 H 1.08002 * 119.93926 * 180.02562 * 21 20 14 50 50 H 1.09000 * 109.47374 * 134.99454 * 23 22 21 51 51 H 0.96693 * 114.00047 * 60.00191 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8781 1.5212 6 6 1.9739 -2.3206 1.5212 7 6 2.4844 -3.0420 2.7702 8 16 1.8791 -4.7520 2.7707 9 8 2.4909 -5.4977 1.7272 10 8 0.4719 -4.7828 2.9653 11 8 2.4484 -5.3561 4.0465 12 6 1.8183 -4.9490 5.1797 13 6 2.2578 -3.8180 5.8494 14 6 1.6158 -3.4083 7.0094 15 7 2.0605 -2.2675 7.6920 16 6 1.5862 -1.8117 8.8735 17 6 2.2786 -0.6933 9.1913 18 6 3.2007 -0.4520 8.1668 19 7 3.0708 -1.3945 7.2682 20 6 0.5321 -4.1292 7.4929 21 6 0.0930 -5.2530 6.8195 22 6 0.7309 -5.6626 5.6643 23 6 0.2486 -6.8885 4.9324 24 8 1.1518 -7.9704 5.1688 25 14 -1.4484 -7.3508 5.5465 26 1 -2.3870 -6.2265 5.3008 27 1 -1.9234 -8.5592 4.8258 28 1 -1.3874 -7.6357 7.0026 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5741 1.7565 -0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2704 0.8899 35 1 2.1207 -1.9060 -1.5210 36 1 2.1207 -0.3644 -2.4111 37 1 3.5740 -0.8786 -1.5208 38 1 2.1207 -0.3642 2.4111 39 1 3.5739 -0.8785 1.5210 40 1 2.3374 -2.8345 0.6313 41 1 0.8840 -2.3206 1.5213 42 1 2.1214 -2.5282 3.6604 43 1 3.5744 -3.0420 2.7699 44 1 3.1009 -3.2588 5.4714 45 1 0.7977 -2.2605 9.4593 46 1 2.1412 -0.0911 10.0771 47 1 3.8991 0.3707 8.1247 48 1 0.0320 -3.8114 8.3958 49 1 -0.7503 -5.8123 7.1968 50 1 0.2038 -6.6795 3.8636 51 1 1.2414 -8.2114 6.1010 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16772190_14927650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:39:31 Heat of formation + Delta-G solvation = -64.130884 kcal Electronic energy + Delta-G solvation = -34330.179556 eV Core-core repulsion = 29869.371531 eV Total energy + Delta-G solvation = -4460.808025 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 398.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.93359 -42.24552 -39.62601 -38.28000 -37.87825 -37.17165 -36.00375 -34.73780 -32.47032 -31.19517 -30.99974 -29.74991 -28.53718 -28.44705 -28.36931 -26.93399 -25.20138 -23.91989 -23.13232 -22.69918 -21.96746 -21.12630 -19.91373 -19.07442 -18.70507 -18.39903 -18.12962 -17.20800 -16.91339 -16.58953 -16.49887 -16.13185 -16.06182 -15.62863 -15.35839 -15.25657 -14.94586 -14.83179 -14.51219 -14.28490 -14.22780 -14.18480 -14.09510 -13.94395 -13.72723 -13.70168 -13.61729 -13.48957 -13.29026 -13.27093 -13.19452 -13.15803 -13.12931 -13.12216 -12.94487 -12.32843 -12.18252 -12.01357 -11.96790 -11.90129 -11.77263 -11.49385 -10.86802 -10.83455 -10.60972 -10.52099 -10.46045 -10.32058 -9.37415 -1.17216 -0.62570 -0.28435 0.80267 0.86285 1.03572 1.15122 1.30930 1.49328 1.63262 1.69615 1.81363 1.82879 1.87550 2.07755 2.48842 2.59005 2.82069 3.07406 3.23080 3.30828 3.39960 3.46790 3.54810 3.56041 3.61844 3.75397 3.87657 3.98430 4.00032 4.22103 4.24743 4.44901 4.47257 4.49777 4.54728 4.60830 4.64072 4.68448 4.69659 4.70780 4.72807 4.73342 4.74904 4.76132 4.80917 4.83034 4.88638 5.19578 5.24392 5.42015 5.43970 5.51708 5.53959 5.82117 6.38923 6.49513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.002 2.998 3 C -0.449 4.449 4 C -0.453 4.453 5 C -0.406 4.406 6 C -0.100 4.100 7 C -0.647 4.647 8 S 2.580 3.420 9 O -0.916 6.916 10 O -0.947 6.947 11 O -0.651 6.651 12 C 0.122 3.878 13 C -0.138 4.138 14 C 0.190 3.810 15 N -0.331 5.331 16 C 0.055 3.945 17 C -0.253 4.253 18 C 0.065 3.935 19 N -0.291 5.291 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.100 4.100 23 C -0.102 4.102 24 O -0.528 6.528 25 Si 0.954 3.046 26 H -0.239 1.239 27 H -0.244 1.244 28 H -0.247 1.247 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.158 0.842 45 H 0.182 0.818 46 H 0.159 0.841 47 H 0.194 0.806 48 H 0.149 0.851 49 H 0.151 0.849 50 H 0.128 0.872 51 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 4.471 5.869 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.198 2.802 3 C -0.556 4.556 4 C -0.561 4.561 5 C -0.491 4.491 6 C -0.139 4.139 7 C -0.775 4.775 8 S 2.676 3.324 9 O -0.914 6.914 10 O -0.946 6.946 11 O -0.609 6.609 12 C 0.080 3.920 13 C -0.160 4.160 14 C 0.097 3.903 15 N -0.107 5.107 16 C -0.086 4.086 17 C -0.281 4.281 18 C -0.122 4.122 19 N -0.110 5.110 20 C -0.140 4.140 21 C -0.099 4.099 22 C -0.103 4.103 23 C -0.211 4.211 24 O -0.332 6.332 25 Si 0.774 3.226 26 H -0.162 1.162 27 H -0.167 1.167 28 H -0.171 1.171 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.176 0.824 45 H 0.199 0.801 46 H 0.177 0.823 47 H 0.211 0.789 48 H 0.166 0.834 49 H 0.169 0.831 50 H 0.146 0.854 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.585 3.008 4.165 5.752 hybrid contribution 0.751 1.222 1.316 1.947 sum -1.834 4.231 5.482 7.163 Atomic orbital electron populations 1.26169 1.20671 1.04610 1.04570 0.79338 0.67288 0.67078 0.66476 1.26097 1.06263 1.18776 1.04487 1.26171 1.06401 1.08180 1.15317 1.26174 1.06336 1.00340 1.16292 1.20978 1.01635 0.97071 0.94204 1.30942 1.13797 1.23953 1.08807 1.06005 0.74912 0.77422 0.74052 1.93676 1.77481 1.67606 1.52674 1.93624 1.31404 1.86109 1.83422 1.85765 1.69891 1.75924 1.29336 1.17388 0.93170 0.94611 0.86872 1.20956 1.02154 0.96916 0.95984 1.17066 0.94710 0.86084 0.92469 1.45826 1.28686 1.19626 1.16539 1.22719 1.00703 0.96882 0.88285 1.21730 1.01862 1.00828 1.03708 1.24214 0.98760 0.97519 0.91726 1.77494 1.06616 1.03322 1.23528 1.20971 0.95713 0.95633 1.01673 1.20922 0.99553 0.96053 0.93348 1.20564 0.94775 0.98506 0.96483 1.25367 1.05180 0.84911 1.05681 1.86629 1.65889 1.49714 1.31005 0.85651 0.74688 0.82391 0.79890 1.16162 1.16698 1.17108 0.91206 0.91080 0.91105 0.91224 0.91138 0.91273 0.91087 0.91082 0.91112 0.90068 0.89952 0.89871 0.89890 0.84613 0.84070 0.82408 0.80057 0.82336 0.78923 0.83375 0.83131 0.85436 0.77730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.56 8.65 101.05 0.87 1.44 16 2 Si 1.00 -2.45 12.19 -169.99 -2.07 -4.52 16 3 C -0.45 0.63 8.65 101.05 0.87 1.51 16 4 C -0.45 0.51 8.65 101.05 0.87 1.39 16 5 C -0.41 0.69 4.45 37.16 0.17 0.86 16 6 C -0.10 0.06 4.59 -26.73 -0.12 -0.06 16 7 C -0.65 0.24 5.45 37.16 0.20 0.44 16 8 S 2.58 7.65 4.93 -107.50 -0.53 7.13 16 9 O -0.92 -5.75 18.09 -67.04 -1.21 -6.96 16 10 O -0.95 -3.65 14.23 -67.03 -0.95 -4.60 16 11 O -0.65 -2.09 9.47 -51.76 -0.49 -2.58 16 12 C 0.12 0.26 4.78 -39.24 -0.19 0.07 16 13 C -0.14 -0.13 8.07 -39.25 -0.32 -0.45 16 14 C 0.19 0.03 6.68 -83.61 -0.56 -0.52 16 15 N -0.33 -0.17 3.80 -10.71 -0.04 -0.21 16 16 C 0.06 -0.09 10.79 -17.10 -0.18 -0.28 16 17 C -0.25 0.43 10.81 -39.99 -0.43 0.00 16 18 C 0.07 -0.04 12.03 -17.33 -0.21 -0.25 16 19 N -0.29 -0.47 11.88 30.64 0.36 -0.11 16 20 C -0.12 0.24 9.45 -39.38 -0.37 -0.13 16 21 C -0.08 0.11 8.65 -39.63 -0.34 -0.23 16 22 C -0.10 -0.12 4.68 -104.44 -0.49 -0.61 16 23 C -0.10 -0.19 2.23 36.00 0.08 -0.11 16 24 O -0.53 -0.97 12.88 -35.23 -0.45 -1.43 16 25 Si 0.95 -0.24 25.49 -169.99 -4.33 -4.57 16 26 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 27 H -0.24 -0.27 7.11 56.52 0.40 0.13 16 28 H -0.25 0.54 6.73 56.52 0.38 0.92 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 36 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 37 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 38 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 39 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 40 H 0.08 -0.11 7.79 -51.93 -0.40 -0.52 16 41 H 0.08 -0.13 7.79 -51.93 -0.40 -0.54 16 42 H 0.14 -0.21 6.58 -51.92 -0.34 -0.55 16 43 H 0.14 -0.29 8.14 -51.93 -0.42 -0.71 16 44 H 0.16 0.03 7.11 -52.49 -0.37 -0.35 16 45 H 0.18 -0.98 7.06 -52.49 -0.37 -1.35 16 46 H 0.16 -0.62 8.06 -52.49 -0.42 -1.04 16 47 H 0.19 -0.70 8.06 -52.48 -0.42 -1.12 16 48 H 0.15 -0.78 6.75 -52.49 -0.35 -1.13 16 49 H 0.15 -0.56 4.88 -52.49 -0.26 -0.82 16 50 H 0.13 0.42 5.42 -51.93 -0.28 0.14 16 51 H 0.38 -0.97 8.70 45.56 0.40 -0.58 16 LS Contribution 426.11 15.07 6.42 6.42 Total: 0.00 -10.69 426.11 -10.45 -21.15 By element: Atomic # 1 Polarization: -5.76 SS G_CDS: -7.01 Total: -12.76 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.14 Total: 3.06 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: 0.32 Total: -0.32 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -3.11 Total: -15.58 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: -6.41 Total: -9.09 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -0.53 Total: 7.13 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -10.69 -10.45 -21.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16772190_14927650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.986 kcal (2) G-P(sol) polarization free energy of solvation -10.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds