Wall clock time and date at job start Mon Mar 8 2021 09:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86302 * 109.47042 * 2 1 4 4 C 1.86299 * 109.47129 * 239.99877 * 2 1 3 5 5 C 1.86299 * 109.46984 * 119.99613 * 2 1 3 6 6 C 1.53002 * 109.46876 * 59.99987 * 5 2 1 7 7 C 1.53005 * 109.46904 * 179.97438 * 6 5 2 8 8 S 1.81397 * 109.46955 * 179.97438 * 7 6 5 9 9 O 1.42101 * 110.53951 * 68.37979 * 8 7 6 10 10 O 1.42095 * 110.54637 * 291.62708 * 8 7 6 11 11 O 1.52204 * 104.44964 * 179.97438 * 8 7 6 12 12 C 1.35902 * 113.99492 * 75.00330 * 11 8 7 13 13 C 1.38595 * 120.02260 * 270.27137 * 12 11 8 14 14 C 1.38766 * 119.87667 * 180.27640 * 13 12 11 15 15 N 1.40190 * 120.03498 * 179.77295 * 14 13 12 16 16 C 1.35226 * 126.04790 * 184.69262 * 15 14 13 17 17 C 1.35324 * 107.71299 * 179.87318 * 16 15 14 18 18 C 1.39922 * 107.92626 * 0.38635 * 17 16 15 19 19 N 1.30875 * 108.24710 * 359.75960 * 18 17 16 20 20 C 1.38846 * 119.92625 * 359.74598 * 14 13 12 21 21 C 1.38172 * 120.04239 * 359.97438 * 20 14 13 22 22 C 1.38171 * 120.12142 * 0.02562 * 21 20 14 23 23 C 1.50697 * 119.96252 * 180.02562 * 22 21 20 24 24 O 1.42906 * 109.46831 * 254.99881 * 23 22 21 25 25 Si 1.86300 * 109.47007 * 14.99270 * 23 22 21 26 26 H 1.48503 * 109.46942 * 60.00611 * 25 23 22 27 27 H 1.48503 * 109.47276 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47372 * 300.00074 * 25 23 22 29 29 H 1.09002 * 109.46978 * 300.00595 * 1 2 3 30 30 H 1.09004 * 109.47146 * 59.99677 * 1 2 3 31 31 H 1.08993 * 109.47209 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47045 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46793 * 299.99731 * 3 2 1 34 34 H 1.08993 * 109.47640 * 59.99568 * 3 2 1 35 35 H 1.09006 * 109.46471 * 299.99823 * 4 2 1 36 36 H 1.08996 * 109.47052 * 60.00062 * 4 2 1 37 37 H 1.08997 * 109.46772 * 180.02562 * 4 2 1 38 38 H 1.09002 * 109.47093 * 299.99722 * 5 2 1 39 39 H 1.08995 * 109.46956 * 179.97438 * 5 2 1 40 40 H 1.08998 * 109.47016 * 60.00550 * 6 5 2 41 41 H 1.08995 * 109.47201 * 299.99695 * 6 5 2 42 42 H 1.09006 * 109.46755 * 60.00390 * 7 6 5 43 43 H 1.08997 * 109.47533 * 300.00454 * 7 6 5 44 44 H 1.07999 * 120.06455 * 0.02562 * 13 12 11 45 45 H 1.07998 * 126.14958 * 359.97438 * 16 15 14 46 46 H 1.07991 * 126.04135 * 180.16539 * 17 16 15 47 47 H 1.08004 * 125.87990 * 179.73698 * 18 17 16 48 48 H 1.08002 * 119.98213 * 179.97438 * 20 14 13 49 49 H 1.08002 * 119.93926 * 180.02562 * 21 20 14 50 50 H 1.09000 * 109.47374 * 134.99454 * 23 22 21 51 51 H 0.96693 * 114.00047 * 60.00191 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8781 1.5212 6 6 1.9739 -2.3206 1.5212 7 6 2.4844 -3.0420 2.7702 8 16 1.8791 -4.7520 2.7707 9 8 2.4909 -5.4977 1.7272 10 8 0.4719 -4.7828 2.9653 11 8 2.4484 -5.3561 4.0465 12 6 1.8183 -4.9490 5.1797 13 6 2.2578 -3.8180 5.8494 14 6 1.6158 -3.4083 7.0094 15 7 2.0605 -2.2675 7.6920 16 6 1.5862 -1.8117 8.8735 17 6 2.2786 -0.6933 9.1913 18 6 3.2007 -0.4520 8.1668 19 7 3.0708 -1.3945 7.2682 20 6 0.5321 -4.1292 7.4929 21 6 0.0930 -5.2530 6.8195 22 6 0.7309 -5.6626 5.6643 23 6 0.2486 -6.8885 4.9324 24 8 1.1518 -7.9704 5.1688 25 14 -1.4484 -7.3508 5.5465 26 1 -2.3870 -6.2265 5.3008 27 1 -1.9234 -8.5592 4.8258 28 1 -1.3874 -7.6357 7.0026 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5741 1.7565 -0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2704 0.8899 35 1 2.1207 -1.9060 -1.5210 36 1 2.1207 -0.3644 -2.4111 37 1 3.5740 -0.8786 -1.5208 38 1 2.1207 -0.3642 2.4111 39 1 3.5739 -0.8785 1.5210 40 1 2.3374 -2.8345 0.6313 41 1 0.8840 -2.3206 1.5213 42 1 2.1214 -2.5282 3.6604 43 1 3.5744 -3.0420 2.7699 44 1 3.1009 -3.2588 5.4714 45 1 0.7977 -2.2605 9.4593 46 1 2.1412 -0.0911 10.0771 47 1 3.8991 0.3707 8.1247 48 1 0.0320 -3.8114 8.3958 49 1 -0.7503 -5.8123 7.1968 50 1 0.2038 -6.6795 3.8636 51 1 1.2414 -8.2114 6.1010 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16772190_14927650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:39:30 Heat of formation + Delta-G solvation = -62.576088 kcal Electronic energy + Delta-G solvation = -34330.112135 eV Core-core repulsion = 29869.371531 eV Total energy + Delta-G solvation = -4460.740604 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 398.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.87505 -42.21751 -39.62358 -38.55071 -37.93477 -37.43760 -35.96631 -34.66670 -32.39967 -31.09513 -30.88892 -29.65355 -28.45095 -28.33929 -28.28492 -26.91359 -25.16128 -23.85523 -23.11094 -22.64860 -21.82965 -21.11419 -19.96266 -19.19495 -18.78706 -18.43623 -18.15183 -17.21869 -16.93737 -16.58026 -16.40824 -16.13901 -16.00432 -15.66547 -15.29082 -15.21629 -14.84868 -14.73769 -14.50445 -14.31132 -14.18818 -14.09639 -14.01766 -13.76712 -13.68317 -13.63779 -13.59466 -13.50414 -13.48273 -13.43261 -13.18338 -13.12161 -13.09089 -13.01662 -12.89087 -12.33568 -12.14923 -11.95129 -11.91246 -11.81866 -11.70704 -11.43303 -10.75046 -10.72257 -10.55059 -10.51820 -10.38652 -10.20095 -9.27289 -1.28718 -0.55722 -0.25878 0.76177 0.95803 1.03754 1.25069 1.35941 1.53338 1.81084 1.85270 1.91874 1.97486 1.97709 2.16104 2.35125 2.67176 2.69131 3.15315 3.31218 3.33239 3.50916 3.53087 3.57943 3.64695 3.80542 3.89700 4.01149 4.06788 4.10971 4.30590 4.34016 4.48904 4.53538 4.63190 4.64341 4.71354 4.75645 4.78913 4.80381 4.81388 4.83412 4.84257 4.84378 4.84804 4.91766 5.00393 5.04264 5.25517 5.38503 5.55951 5.60738 5.63427 5.63730 6.00504 6.52762 6.64903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.470 4.470 2 Si 1.068 2.932 3 C -0.461 4.461 4 C -0.473 4.473 5 C -0.413 4.413 6 C -0.118 4.118 7 C -0.627 4.627 8 S 2.574 3.426 9 O -0.964 6.964 10 O -0.964 6.964 11 O -0.663 6.663 12 C 0.095 3.905 13 C -0.146 4.146 14 C 0.179 3.821 15 N -0.342 5.342 16 C 0.054 3.946 17 C -0.262 4.262 18 C 0.058 3.942 19 N -0.335 5.335 20 C -0.103 4.103 21 C -0.075 4.075 22 C -0.115 4.115 23 C -0.123 4.123 24 O -0.550 6.550 25 Si 0.985 3.015 26 H -0.243 1.243 27 H -0.273 1.273 28 H -0.202 1.202 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.220 0.780 46 H 0.180 0.820 47 H 0.213 0.787 48 H 0.189 0.811 49 H 0.179 0.821 50 H 0.100 0.900 51 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 5.785 8.759 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.576 4.576 2 Si 1.260 2.740 3 C -0.568 4.568 4 C -0.579 4.579 5 C -0.498 4.498 6 C -0.157 4.157 7 C -0.758 4.758 8 S 2.675 3.325 9 O -0.962 6.962 10 O -0.963 6.963 11 O -0.622 6.622 12 C 0.053 3.947 13 C -0.169 4.169 14 C 0.086 3.914 15 N -0.118 5.118 16 C -0.086 4.086 17 C -0.290 4.290 18 C -0.129 4.129 19 N -0.153 5.153 20 C -0.124 4.124 21 C -0.093 4.093 22 C -0.119 4.119 23 C -0.230 4.230 24 O -0.358 6.358 25 Si 0.802 3.198 26 H -0.166 1.166 27 H -0.198 1.198 28 H -0.124 1.124 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.236 0.764 46 H 0.197 0.803 47 H 0.229 0.771 48 H 0.206 0.794 49 H 0.196 0.804 50 H 0.118 0.882 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.580 4.299 7.074 9.019 hybrid contribution 1.103 0.885 0.442 1.482 sum -2.477 5.184 7.516 9.460 Atomic orbital electron populations 1.26379 1.22184 1.04478 1.04606 0.78314 0.65433 0.65510 0.64713 1.26245 1.06434 1.19632 1.04490 1.26413 1.06605 1.08354 1.16514 1.26303 1.06948 0.99382 1.17186 1.21231 1.02445 0.97903 0.94096 1.30804 1.14801 1.20373 1.09840 1.06019 0.74485 0.78596 0.73422 1.93606 1.78083 1.69889 1.54622 1.93583 1.32383 1.86862 1.83434 1.85721 1.70033 1.76551 1.29848 1.17698 0.94287 0.95789 0.86905 1.20976 1.02466 0.96707 0.96706 1.17325 0.95311 0.86447 0.92331 1.45937 1.28913 1.19677 1.17307 1.23421 1.01005 0.96680 0.87507 1.22090 1.01525 1.01253 1.04122 1.24714 0.99088 0.97441 0.91643 1.77449 1.08143 1.04579 1.25156 1.21408 0.94365 0.94319 1.02264 1.21233 0.99687 0.96254 0.92138 1.20740 0.95052 0.98435 0.97625 1.25671 1.07159 0.85461 1.04695 1.86573 1.66404 1.49971 1.32818 0.85278 0.71964 0.80622 0.81927 1.16631 1.19772 1.12367 0.91030 0.91205 0.91347 0.91149 0.91315 0.91112 0.91441 0.91213 0.91082 0.89409 0.89236 0.89491 0.89139 0.83168 0.82370 0.82645 0.76397 0.80299 0.77074 0.79377 0.80371 0.88196 0.75755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.01 8.65 113.37 0.98 1.99 16 2 Si 1.07 -5.17 12.19 68.60 0.84 -4.33 16 3 C -0.46 1.40 8.65 113.37 0.98 2.39 16 4 C -0.47 0.74 8.65 113.37 0.98 1.72 16 5 C -0.41 1.50 4.45 71.98 0.32 1.82 16 6 C -0.12 0.06 4.59 30.60 0.14 0.20 16 7 C -0.63 -0.28 5.45 71.98 0.39 0.11 16 8 S 2.57 22.58 4.93 -56.49 -0.28 22.30 16 9 O -0.96 -15.71 18.09 -118.57 -2.15 -17.85 16 10 O -0.96 -10.25 14.23 -118.57 -1.69 -11.94 16 11 O -0.66 -6.21 9.47 -61.54 -0.58 -6.79 16 12 C 0.10 0.55 4.78 22.49 0.11 0.66 16 13 C -0.15 -0.41 8.07 22.48 0.18 -0.23 16 14 C 0.18 -0.08 6.68 38.08 0.25 0.18 16 15 N -0.34 0.00 3.80 -187.80 -0.71 -0.71 16 16 C 0.05 -0.31 10.79 83.50 0.90 0.59 16 17 C -0.26 1.36 10.81 22.00 0.24 1.60 16 18 C 0.06 -0.11 12.03 85.24 1.03 0.91 16 19 N -0.33 -1.07 11.88 -56.97 -0.68 -1.75 16 20 C -0.10 0.66 9.45 22.40 0.21 0.87 16 21 C -0.08 0.34 8.65 22.24 0.19 0.53 16 22 C -0.12 -0.35 4.68 -19.75 -0.09 -0.45 16 23 C -0.12 -0.64 2.23 71.23 0.16 -0.48 16 24 O -0.55 -3.06 12.88 -148.98 -1.92 -4.98 16 25 Si 0.98 -0.89 25.49 68.60 1.75 0.86 16 26 H -0.24 0.10 7.11 99.48 0.71 0.81 16 27 H -0.27 -0.96 7.11 99.48 0.71 -0.26 16 28 H -0.20 1.62 6.73 99.48 0.67 2.29 16 29 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 31 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 32 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 33 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 35 H 0.07 -0.06 7.79 -2.38 -0.02 -0.08 16 36 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 37 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 38 H 0.09 -0.41 7.96 -2.39 -0.02 -0.43 16 39 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 40 H 0.09 -0.12 7.79 -2.39 -0.02 -0.14 16 41 H 0.09 -0.21 7.79 -2.39 -0.02 -0.22 16 42 H 0.15 -0.35 6.58 -2.39 -0.02 -0.37 16 43 H 0.16 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.16 0.32 7.11 -2.91 -0.02 0.30 16 45 H 0.22 -3.25 7.06 -2.91 -0.02 -3.27 16 46 H 0.18 -1.82 8.06 -2.92 -0.02 -1.85 16 47 H 0.21 -1.64 8.06 -2.91 -0.02 -1.67 16 48 H 0.19 -2.85 6.75 -2.91 -0.02 -2.87 16 49 H 0.18 -1.91 4.88 -2.91 -0.01 -1.93 16 50 H 0.10 1.01 5.42 -2.39 -0.01 1.00 16 51 H 0.39 -1.70 8.70 -74.06 -0.64 -2.34 16 Total: 0.00 -28.74 426.11 2.58 -26.16 By element: Atomic # 1 Polarization: -14.41 SS G_CDS: 1.02 Total: -13.38 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.97 Total: 12.42 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -1.39 Total: -2.46 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -6.33 Total: -41.57 kcal Atomic # 14 Polarization: -6.06 SS G_CDS: 2.58 Total: -3.47 kcal Atomic # 16 Polarization: 22.58 SS G_CDS: -0.28 Total: 22.30 kcal Total: -28.74 2.58 -26.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16772190_14927650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.417 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds