Wall clock time and date at job start Mon Mar 8 2021 10:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.47700 * 2 1 4 4 C 1.34232 * 117.00294 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99798 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00033 * 180.02562 * 4 3 2 7 7 H 1.08998 * 112.85012 * 48.80356 * 6 4 3 8 8 C 1.53774 * 113.61153 * 180.02562 * 6 4 3 9 9 C 1.53774 * 87.08319 * 139.97883 * 8 6 4 10 10 F 1.39902 * 113.61870 * 219.93302 * 9 8 6 11 11 C 1.53002 * 113.61735 * 89.11438 * 9 8 6 12 12 S 1.81393 * 109.47467 * 185.00322 * 11 9 8 13 13 O 1.42102 * 110.54508 * 286.45095 * 12 11 9 14 14 O 1.42104 * 110.54363 * 63.20099 * 12 11 9 15 15 O 1.52204 * 104.45073 * 174.82718 * 12 11 9 16 16 C 1.35897 * 114.00190 * 76.48280 * 15 12 11 17 17 C 1.38754 * 120.01938 * 97.21598 * 16 15 12 18 18 C 1.50695 * 119.96790 * 0.02562 * 17 16 15 19 19 O 1.42909 * 109.46992 * 283.94791 * 18 17 16 20 20 Si 1.86301 * 109.47524 * 163.94547 * 18 17 16 21 21 C 1.38218 * 120.06918 * 179.74811 * 17 16 15 22 22 C 1.38122 * 120.12540 * 0.54887 * 21 17 16 23 23 C 1.38895 * 120.04278 * 359.70644 * 22 21 17 24 24 N 1.40187 * 120.03706 * 180.02562 * 23 22 21 25 25 C 1.35223 * 126.05050 * 359.69510 * 24 23 22 26 26 C 1.35330 * 107.70705 * 179.89741 * 25 24 23 27 27 C 1.39919 * 107.93297 * 0.36286 * 26 25 24 28 28 N 1.30881 * 108.24180 * 359.77519 * 27 26 25 29 29 C 1.38634 * 120.01901 * 277.49176 * 16 15 12 30 30 C 1.53775 * 87.08122 * 334.56515 * 9 8 6 31 31 H 1.09003 * 109.46947 * 59.99263 * 1 2 3 32 32 H 1.08995 * 109.47382 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46454 * 300.00179 * 1 2 3 34 34 H 1.09001 * 109.46595 * 239.99539 * 2 1 3 35 35 H 1.09003 * 109.46947 * 120.00737 * 2 1 3 36 36 H 1.09003 * 113.61465 * 254.52552 * 8 6 4 37 37 H 1.08997 * 113.62192 * 25.34357 * 8 6 4 38 38 H 1.09008 * 109.46524 * 305.00106 * 11 9 8 39 39 H 1.08992 * 109.47368 * 64.99642 * 11 9 8 40 40 H 1.08999 * 109.47023 * 43.93970 * 18 17 16 41 41 H 0.96699 * 113.99612 * 299.99203 * 19 18 17 42 42 H 1.48495 * 109.99991 * 180.02562 * 20 18 17 43 43 H 1.48504 * 109.99728 * 301.32003 * 20 18 17 44 44 H 1.08008 * 119.93467 * 180.27752 * 21 17 16 45 45 H 1.08000 * 119.98059 * 179.72253 * 22 21 17 46 46 H 1.07995 * 126.15014 * 0.03083 * 25 24 23 47 47 H 1.07996 * 126.03263 * 180.16348 * 26 25 24 48 48 H 1.07991 * 125.88017 * 179.75215 * 27 26 25 49 49 H 1.08001 * 120.06514 * 359.95939 * 29 16 15 50 50 H 1.08997 * 113.61524 * 270.88252 * 30 9 8 51 51 H 1.09003 * 113.61827 * 139.97911 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9210 2.9372 0.0000 7 1 3.4718 3.5808 0.7564 8 6 5.4584 2.9677 -0.0013 9 6 5.3559 4.1428 -0.9879 10 9 6.3092 4.1004 -2.0111 11 6 5.2766 5.5103 -0.3064 12 16 5.0112 6.7956 -1.5585 13 8 6.2019 7.0228 -2.3001 14 8 3.7652 6.6033 -2.2143 15 8 4.8193 8.0743 -0.7556 16 6 5.9729 8.5939 -0.2595 17 6 6.6213 9.6167 -0.9368 18 6 6.0453 10.1515 -2.2225 19 8 6.3043 9.2273 -3.2813 20 14 6.8348 11.7910 -2.6222 21 6 7.7918 10.1494 -0.4305 22 6 8.3257 9.6580 0.7448 23 6 7.6836 8.6306 1.4240 24 7 8.2253 8.1322 2.6171 25 6 9.3639 8.5548 3.2117 26 6 9.5353 7.8249 4.3383 27 6 8.4715 6.9209 4.4320 28 7 7.6861 7.1043 3.4012 29 6 6.5056 8.0984 0.9206 30 6 3.9854 3.5777 -1.3966 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 5.8905 3.2421 0.9610 37 1 5.9126 2.0744 -0.4299 38 1 4.4475 5.5159 0.4014 39 1 6.2083 5.7066 0.2240 40 1 4.9691 10.2840 -2.1112 41 1 7.2441 9.0611 -3.4371 42 1 6.2748 12.3293 -3.8878 43 1 6.5997 12.7514 -1.5142 44 1 8.2923 10.9486 -0.9572 45 1 9.2429 10.0729 1.1359 46 1 10.0178 9.3360 2.8533 47 1 10.3511 7.9208 5.0395 48 1 8.3240 6.1963 5.2191 49 1 6.0044 7.2997 1.4472 50 1 4.0367 2.8517 -2.2080 51 1 3.2282 4.3445 -1.5606 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16772190_15494190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:10:14 Heat of formation + Delta-G solvation = -107.754331 kcal Electronic energy + Delta-G solvation = -43366.523357 eV Core-core repulsion = 37665.222139 eV Total energy + Delta-G solvation = -5701.301217 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.123 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.17374 -42.85073 -42.19718 -42.00217 -39.70830 -39.57741 -38.48440 -37.79421 -37.68071 -37.28727 -34.62134 -32.84330 -32.47127 -31.58792 -31.07317 -30.80055 -27.42940 -27.21978 -26.82605 -25.15372 -24.08297 -23.77699 -22.85307 -22.45228 -21.85775 -21.27800 -20.52862 -19.94678 -19.41015 -19.17411 -18.70991 -18.30044 -18.22628 -18.03366 -17.75827 -17.17145 -16.99863 -16.71086 -16.61616 -16.34325 -16.31408 -16.14300 -15.83410 -15.61687 -15.49312 -15.18102 -14.96939 -14.89424 -14.72217 -14.53424 -14.33013 -14.22950 -14.14250 -13.82736 -13.74269 -13.70240 -13.59099 -13.51107 -13.39287 -13.30844 -13.11608 -13.04578 -12.89820 -12.77040 -12.59293 -12.53763 -12.28902 -12.11624 -12.01415 -11.79911 -11.63423 -11.60201 -11.53534 -11.39505 -10.44434 -10.38190 -10.17597 -9.24027 -5.03127 -1.37155 -0.52085 -0.24062 0.77598 0.90111 0.99503 1.22453 1.27772 1.46750 1.65967 1.82973 1.99667 2.20352 2.24063 2.52403 2.61683 2.79878 2.86887 3.03682 3.12957 3.20762 3.31936 3.41408 3.58023 3.60923 3.66405 3.73352 3.89764 3.91890 3.93237 3.96389 3.98265 4.02587 4.12006 4.15637 4.26885 4.30823 4.31472 4.36220 4.49306 4.51195 4.62761 4.64498 4.69004 4.77150 4.78705 4.84930 4.85820 4.90435 4.96621 5.06483 5.07363 5.29375 5.33757 5.62752 6.03313 6.51640 6.54434 6.82267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.476 3.524 5 O -0.531 6.531 6 C -0.102 4.102 7 H 0.168 0.832 8 C -0.116 4.116 9 C 0.097 3.903 10 F -0.198 7.198 11 C -0.663 4.663 12 S 2.593 3.407 13 O -0.926 6.926 14 O -0.953 6.953 15 O -0.666 6.666 16 C 0.092 3.908 17 C -0.117 4.117 18 C -0.115 4.115 19 O -0.543 6.543 20 Si 0.811 3.189 21 C -0.057 4.057 22 C -0.105 4.105 23 C 0.180 3.820 24 N -0.342 5.342 25 C 0.056 3.944 26 C -0.264 4.264 27 C 0.058 3.942 28 N -0.334 5.334 29 C -0.160 4.160 30 C -0.159 4.159 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.193 0.807 39 H 0.171 0.829 40 H 0.095 0.905 41 H 0.398 0.602 42 H -0.301 1.301 43 H -0.265 1.265 44 H 0.193 0.807 45 H 0.191 0.809 46 H 0.221 0.779 47 H 0.178 0.822 48 H 0.212 0.788 49 H 0.158 0.842 50 H 0.111 0.889 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 4.491 7.347 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.319 3.681 5 O -0.420 6.420 6 C -0.120 4.120 7 H 0.185 0.815 8 C -0.154 4.154 9 C 0.077 3.923 10 F -0.178 7.178 11 C -0.789 4.789 12 S 2.689 3.311 13 O -0.924 6.924 14 O -0.951 6.951 15 O -0.625 6.625 16 C 0.050 3.950 17 C -0.120 4.120 18 C -0.222 4.222 19 O -0.352 6.352 20 Si 0.712 3.288 21 C -0.075 4.075 22 C -0.126 4.126 23 C 0.087 3.913 24 N -0.118 5.118 25 C -0.085 4.085 26 C -0.292 4.292 27 C -0.129 4.129 28 N -0.153 5.153 29 C -0.182 4.182 30 C -0.196 4.196 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.210 0.790 39 H 0.189 0.811 40 H 0.113 0.887 41 H 0.248 0.752 42 H -0.229 1.229 43 H -0.191 1.191 44 H 0.210 0.790 45 H 0.208 0.792 46 H 0.238 0.762 47 H 0.196 0.804 48 H 0.228 0.772 49 H 0.176 0.824 50 H 0.130 0.870 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.755 5.019 5.922 9.103 hybrid contribution -0.384 -1.337 0.952 1.686 sum 4.371 3.681 6.875 8.940 Atomic orbital electron populations 1.21840 0.90670 1.04356 1.03770 1.23311 0.96966 0.79067 1.02735 1.86523 1.23864 1.33810 1.83259 1.23586 0.80785 0.92334 0.71354 1.90682 1.61118 1.43860 1.46387 1.22448 0.97218 0.91240 1.01118 0.81467 1.23580 0.93700 0.96893 1.01236 1.21718 0.88584 0.94301 0.87672 1.92953 1.66492 1.97362 1.60989 1.31324 1.16815 1.10955 1.19784 1.05516 0.74605 0.75202 0.75738 1.93633 1.49330 1.80969 1.68509 1.93602 1.45064 1.84871 1.71573 1.85721 1.42524 1.57584 1.76638 1.17723 0.83477 0.98993 0.94826 1.20797 0.96737 0.96560 0.97934 1.25742 1.04691 1.06325 0.85431 1.86562 1.32791 1.64834 1.50967 0.93817 0.87824 0.69992 0.77122 1.21184 0.92391 0.99065 0.94872 1.21483 1.02035 0.94284 0.94778 1.17362 0.93360 0.95485 0.85134 1.45946 1.19467 1.28521 1.17899 1.23433 0.89227 1.01317 0.94474 1.22094 1.04016 1.01459 1.01633 1.24695 0.92618 0.99310 0.96305 1.77410 1.24001 1.06927 1.06957 1.21041 0.97271 1.04364 0.95574 1.23963 0.96106 1.02318 0.97229 0.91402 0.88397 0.91101 0.91345 0.90935 0.85952 0.87469 0.78964 0.81113 0.88694 0.75151 1.22892 1.19086 0.79016 0.79151 0.76239 0.80433 0.77178 0.82437 0.87035 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 10.29 71.98 0.74 1.12 16 2 C 0.05 0.10 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.62 10.22 -51.44 -0.53 -2.15 16 4 C 0.48 2.48 7.48 71.24 0.53 3.02 16 5 O -0.53 -5.84 15.65 21.98 0.34 -5.50 16 6 C -0.10 0.07 3.91 -11.02 -0.04 0.02 16 7 H 0.17 -1.26 7.62 -2.39 -0.02 -1.28 16 8 C -0.12 0.03 6.89 31.12 0.21 0.24 16 9 C 0.10 0.24 1.74 -10.27 -0.02 0.22 16 10 F -0.20 -1.67 16.76 44.97 0.75 -0.91 16 11 C -0.66 0.62 4.69 71.98 0.34 0.96 16 12 S 2.59 20.23 4.87 -56.49 -0.28 19.96 16 13 O -0.93 -9.81 13.52 -115.18 -1.56 -11.37 16 14 O -0.95 -13.58 16.74 -118.57 -1.99 -15.56 16 15 O -0.67 -4.57 9.36 -61.49 -0.58 -5.15 16 16 C 0.09 0.33 4.64 22.49 0.10 0.43 16 17 C -0.12 -0.03 4.94 -19.75 -0.10 -0.13 16 18 C -0.11 -0.27 2.38 71.23 0.17 -0.10 16 19 O -0.54 -3.15 10.03 -126.96 -1.27 -4.42 16 20 Si 0.81 -3.41 29.93 68.60 2.05 -1.36 16 21 C -0.06 0.45 8.65 22.24 0.19 0.65 16 22 C -0.10 0.93 9.45 22.40 0.21 1.14 16 23 C 0.18 -0.41 6.69 38.08 0.25 -0.16 16 24 N -0.34 0.51 3.80 -187.80 -0.71 -0.20 16 25 C 0.06 -0.39 10.80 83.50 0.90 0.51 16 26 C -0.26 1.58 10.81 22.01 0.24 1.82 16 27 C 0.06 -0.16 12.03 85.24 1.03 0.86 16 28 N -0.33 -0.55 11.87 -56.97 -0.68 -1.23 16 29 C -0.16 -0.10 8.14 22.48 0.18 0.09 16 30 C -0.16 -0.34 6.96 31.12 0.22 -0.13 16 31 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 34 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 35 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 36 H 0.12 -0.61 8.10 -2.39 -0.02 -0.62 16 37 H 0.11 0.32 7.43 -2.39 -0.02 0.30 16 38 H 0.19 -1.62 7.31 -2.39 -0.02 -1.64 16 39 H 0.17 -0.72 6.39 -2.39 -0.02 -0.73 16 40 H 0.10 0.57 7.79 -2.39 -0.02 0.55 16 41 H 0.40 -0.78 8.66 -74.06 -0.64 -1.43 16 42 H -0.30 -1.35 7.11 99.48 0.71 -0.65 16 43 H -0.26 0.55 7.11 99.48 0.71 1.25 16 44 H 0.19 -3.09 5.14 -2.91 -0.01 -3.10 16 45 H 0.19 -3.36 6.74 -2.91 -0.02 -3.38 16 46 H 0.22 -3.56 7.04 -2.91 -0.02 -3.59 16 47 H 0.18 -1.90 8.06 -2.91 -0.02 -1.92 16 48 H 0.21 -1.79 8.06 -2.92 -0.02 -1.81 16 49 H 0.16 -0.19 6.39 -2.91 -0.02 -0.21 16 50 H 0.11 0.32 8.09 -2.39 -0.02 0.30 16 51 H 0.12 0.20 6.82 -2.39 -0.02 0.19 16 Total: 0.00 -36.84 433.95 1.59 -35.25 By element: Atomic # 1 Polarization: -18.88 SS G_CDS: 0.41 Total: -18.47 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.61 Total: 11.11 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -1.39 Total: -1.43 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -5.57 Total: -44.15 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.75 Total: -0.91 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.05 Total: -1.36 kcal Atomic # 16 Polarization: 20.23 SS G_CDS: -0.28 Total: 19.96 kcal Total: -36.84 1.59 -35.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16772190_15494190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.509 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds