Wall clock time and date at job start Mon Mar 8 2021 10:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86304 * 109.46884 * 2 1 4 4 C 1.50696 * 109.47040 * 240.00080 * 2 1 3 5 5 C 1.38760 * 119.96023 * 284.09247 * 4 2 1 6 6 O 1.35898 * 120.02030 * 0.02960 * 5 4 2 7 7 S 1.52204 * 114.00256 * 97.22581 * 6 5 4 8 8 O 1.42094 * 104.27778 * 192.75912 * 7 6 5 9 9 O 1.42098 * 104.27587 * 320.61788 * 7 6 5 10 10 C 1.81401 * 104.44700 * 76.68836 * 7 6 5 11 11 H 1.09000 * 112.84923 * 309.66224 * 10 7 6 12 12 C 1.53782 * 113.61833 * 80.86488 * 10 7 6 13 13 C 1.53957 * 87.01856 * 139.94767 * 12 10 7 14 14 H 1.09001 * 113.74007 * 220.05427 * 13 12 10 15 15 O 1.42900 * 113.53299 * 89.18968 * 13 12 10 16 16 C 1.42904 * 113.99811 * 112.50357 * 15 13 12 17 17 C 1.50699 * 109.47329 * 179.97438 * 16 15 13 18 18 C 1.38232 * 119.99873 * 269.72909 * 17 16 15 19 19 C 1.38239 * 120.00080 * 179.78722 * 18 17 16 20 20 C 1.38237 * 119.99512 * 0.43744 * 19 18 17 21 21 C 1.38233 * 120.00295 * 359.81404 * 20 19 18 22 22 C 1.38229 * 120.00008 * 359.97438 * 21 20 19 23 23 C 1.53779 * 87.11535 * 334.63855 * 13 12 10 24 24 C 1.38636 * 119.95621 * 180.02562 * 5 4 2 25 25 C 1.38723 * 119.87794 * 0.02562 * 24 5 4 26 26 N 1.40182 * 120.04080 * 180.02562 * 25 24 5 27 27 C 1.35220 * 126.05371 * 184.71376 * 26 25 24 28 28 C 1.35326 * 107.70932 * 179.83903 * 27 26 25 29 29 C 1.39923 * 107.93158 * 0.42573 * 28 27 26 30 30 N 1.30878 * 108.24205 * 359.73515 * 29 28 27 31 31 C 1.38898 * 119.92052 * 0.02562 * 25 24 5 32 32 C 1.38122 * 120.04716 * 359.97438 * 31 25 24 33 33 H 0.96706 * 113.99500 * 60.00420 * 1 2 3 34 34 H 1.08996 * 109.46514 * 119.99682 * 2 1 3 35 35 H 1.48502 * 109.99964 * 59.99998 * 3 2 1 36 36 H 1.48500 * 109.99675 * 181.31393 * 3 2 1 37 37 H 1.08996 * 113.61312 * 254.53289 * 12 10 7 38 38 H 1.09006 * 113.61012 * 25.43190 * 12 10 7 39 39 H 1.09003 * 109.47274 * 299.99790 * 16 15 13 40 40 H 1.09001 * 109.47226 * 59.99785 * 16 15 13 41 41 H 1.08006 * 120.00204 * 359.97438 * 18 17 16 42 42 H 1.07996 * 120.00357 * 180.27561 * 19 18 17 43 43 H 1.08006 * 119.99730 * 179.83461 * 20 19 18 44 44 H 1.07998 * 119.99679 * 179.97438 * 21 20 19 45 45 H 1.08002 * 120.00037 * 180.02562 * 22 21 20 46 46 H 1.08991 * 113.61647 * 270.81629 * 23 13 12 47 47 H 1.08996 * 113.69198 * 139.91518 * 23 13 12 48 48 H 1.07997 * 120.06199 * 179.97438 * 24 5 4 49 49 H 1.07997 * 126.14525 * 0.02562 * 27 26 25 50 50 H 1.08002 * 126.03233 * 180.16026 * 28 27 26 51 51 H 1.07995 * 125.87477 * 179.69916 * 29 28 27 52 52 H 1.08002 * 119.97334 * 180.25538 * 31 25 24 53 53 H 1.07998 * 119.94315 * 179.97438 * 32 31 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.8864 -2.0956 -1.2978 6 8 1.3891 -2.8112 -0.2550 7 16 -0.0681 -3.2177 -0.4220 8 8 -0.4565 -3.6678 0.8686 9 8 -0.6823 -2.0833 -1.0178 10 6 -0.0202 -4.6035 -1.5917 11 1 0.5586 -4.3809 -2.4880 12 6 0.3458 -5.9474 -0.9399 13 6 -0.7199 -6.5867 -1.8488 14 1 -1.3140 -7.3555 -1.3548 15 8 -0.2109 -7.0075 -3.1161 16 6 -0.2029 -8.4249 -3.2976 17 6 0.3497 -8.7538 -4.6605 18 6 -0.5014 -8.8574 -5.7448 19 6 0.0060 -9.1547 -6.9959 20 6 1.3635 -9.3573 -7.1608 21 6 2.2140 -9.2588 -6.0755 22 6 1.7071 -8.9572 -4.8253 23 6 -1.4027 -5.2093 -1.8859 24 6 2.3490 -2.7491 -2.4296 25 6 2.8564 -2.0156 -3.4921 26 7 3.3246 -2.6729 -4.6384 27 6 3.9225 -2.0896 -5.7018 28 6 4.2254 -3.0649 -6.5898 29 6 3.7902 -4.2832 -6.0567 30 7 3.2504 -4.0494 -4.8876 31 6 2.9001 -0.6293 -3.4188 32 6 2.4383 0.0185 -2.2897 33 1 -0.3933 0.4417 -0.7652 34 1 1.7923 -0.5138 0.8900 35 1 1.5615 2.4679 1.2085 36 1 3.5346 1.7703 -0.0320 37 1 1.3617 -6.2763 -1.1584 38 1 0.1021 -5.9987 0.1213 39 1 0.4206 -8.8859 -2.5315 40 1 -1.2204 -8.8074 -3.2165 41 1 -1.5625 -8.7031 -5.6152 42 1 -0.6583 -9.2313 -7.8438 43 1 1.7596 -9.5923 -8.1377 44 1 3.2744 -9.4175 -6.2044 45 1 2.3716 -8.8798 -3.9775 46 1 -2.1251 -5.0584 -1.0838 47 1 -1.7968 -4.9421 -2.8663 48 1 2.3152 -3.8272 -2.4836 49 1 4.1249 -1.0354 -5.8198 50 1 4.7127 -2.9266 -7.5437 51 1 3.8832 -5.2499 -6.5291 52 1 3.2911 -0.0572 -4.2472 53 1 2.4734 1.0965 -2.2344 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16772190_15608174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:17:19 Heat of formation + Delta-G solvation = 15.164045 kcal Electronic energy + Delta-G solvation = -43118.869404 eV Core-core repulsion = 37826.356074 eV Total energy + Delta-G solvation = -5292.513330 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.133 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.84564 -42.18784 -40.85226 -39.99249 -39.57555 -38.45696 -37.80629 -37.27166 -37.09552 -34.63401 -32.73924 -32.36391 -31.83776 -31.08752 -30.85971 -27.61425 -27.14549 -26.82882 -26.59274 -25.05399 -23.80157 -23.52989 -22.80806 -22.32257 -21.97258 -21.51408 -20.82952 -19.79153 -19.43106 -18.92518 -18.35619 -18.10057 -17.94033 -17.55775 -17.22645 -16.73883 -16.69647 -16.59468 -16.36426 -16.27073 -15.99742 -15.75282 -15.58816 -15.35834 -15.18772 -14.98066 -14.87814 -14.66159 -14.35465 -14.30330 -14.20548 -14.15295 -13.94732 -13.74084 -13.67938 -13.61588 -13.54759 -13.49205 -13.34718 -13.29048 -13.21621 -12.84756 -12.30605 -12.21870 -12.11041 -12.04076 -11.92893 -11.81001 -11.77961 -11.43817 -11.27156 -10.66416 -10.45751 -10.38403 -10.19286 -9.86909 -9.81153 -9.25873 -5.04364 -1.21979 -0.52931 -0.22847 0.28299 0.45421 0.80445 0.98949 1.21404 1.27565 1.65403 1.80915 1.98113 2.20289 2.34630 2.42793 2.62649 2.87890 2.95354 3.15853 3.21652 3.31523 3.34972 3.43959 3.59555 3.64744 3.68795 3.83569 3.87219 3.88485 3.94346 4.01409 4.09418 4.11518 4.13606 4.24959 4.28515 4.29548 4.30517 4.37557 4.48894 4.52865 4.59655 4.64005 4.64879 4.66667 4.69572 4.73223 4.76927 4.78421 4.84317 4.95356 5.03182 5.03367 5.10255 5.29071 5.50637 5.57615 5.60022 5.60397 6.02792 6.04270 6.11459 6.54005 6.80769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.115 4.115 3 Si 0.816 3.184 4 C -0.119 4.119 5 C 0.097 3.903 6 O -0.673 6.673 7 S 2.597 3.403 8 O -0.962 6.962 9 O -0.937 6.937 10 C -0.632 4.632 11 H 0.157 0.843 12 C -0.135 4.135 13 C 0.081 3.919 14 H 0.113 0.887 15 O -0.371 6.371 16 C 0.098 3.902 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.160 4.160 25 C 0.179 3.821 26 N -0.342 5.342 27 C 0.055 3.945 28 C -0.262 4.262 29 C 0.056 3.944 30 N -0.333 5.333 31 C -0.106 4.106 32 C -0.056 4.056 33 H 0.398 0.602 34 H 0.093 0.907 35 H -0.299 1.299 36 H -0.266 1.266 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.103 0.897 48 H 0.145 0.855 49 H 0.223 0.777 50 H 0.180 0.820 51 H 0.205 0.795 52 H 0.193 0.807 53 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 2.524 -9.429 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.222 4.222 3 Si 0.717 3.283 4 C -0.122 4.122 5 C 0.055 3.945 6 O -0.631 6.631 7 S 2.696 3.304 8 O -0.960 6.960 9 O -0.935 6.935 10 C -0.741 4.741 11 H 0.174 0.826 12 C -0.174 4.174 13 C 0.022 3.978 14 H 0.131 0.869 15 O -0.291 6.291 16 C 0.023 3.977 17 C -0.108 4.108 18 C -0.130 4.130 19 C -0.151 4.151 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.150 4.150 24 C -0.183 4.183 25 C 0.086 3.914 26 N -0.118 5.118 27 C -0.085 4.085 28 C -0.290 4.290 29 C -0.132 4.132 30 N -0.151 5.151 31 C -0.127 4.127 32 C -0.074 4.074 33 H 0.248 0.752 34 H 0.110 0.890 35 H -0.227 1.227 36 H -0.191 1.191 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.144 0.856 46 H 0.137 0.863 47 H 0.122 0.878 48 H 0.163 0.837 49 H 0.240 0.760 50 H 0.198 0.802 51 H 0.222 0.778 52 H 0.210 0.790 53 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.939 2.849 -6.899 8.022 hybrid contribution 0.423 -1.689 -0.202 1.753 sum 3.362 1.160 -7.101 7.942 Atomic orbital electron populations 1.86551 1.15901 1.82656 1.50058 1.25790 0.86713 1.13657 0.96060 0.93791 0.77629 0.71635 0.85248 1.20806 1.00659 0.91557 0.99172 1.17702 1.02535 0.90018 0.84200 1.85662 1.52850 1.73298 1.51326 1.05428 0.72855 0.76391 0.75740 1.93576 1.79737 1.83997 1.38682 1.93597 1.74671 1.46019 1.79255 1.32206 1.09411 1.15550 1.16982 0.82554 1.23364 1.02935 0.90597 1.00495 1.22904 0.94157 0.96052 0.84698 0.86938 1.87979 1.84489 1.22587 1.34006 1.21551 1.01099 0.81184 0.93908 1.19759 0.94233 1.01717 0.95073 1.21298 1.00301 0.98798 0.92619 1.21461 0.96210 0.99802 0.97618 1.21531 0.93706 0.98778 0.99786 1.21425 1.00933 0.99867 0.92595 1.21257 0.94655 0.98706 0.98279 1.23006 0.91471 0.94934 1.05544 1.20998 1.03199 1.01786 0.92275 1.17392 0.97646 0.91802 0.84580 1.45968 1.46113 1.05712 1.14022 1.23448 0.96226 1.02360 0.86439 1.22077 1.11604 0.91015 1.04276 1.24607 0.95182 1.01541 0.91821 1.77517 1.25734 0.91767 1.20104 1.21481 1.00179 0.90097 1.00937 1.21183 0.94592 1.01677 0.89935 0.75166 0.88951 1.22658 1.19145 0.88632 0.86584 0.91238 0.90652 0.85122 0.84340 0.84102 0.84317 0.85642 0.86343 0.87801 0.83696 0.76040 0.80223 0.77823 0.78998 0.78801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -3.80 10.04 -126.98 -1.27 -5.08 16 2 C -0.12 -0.47 2.38 71.23 0.17 -0.30 16 3 Si 0.82 -2.68 29.93 68.60 2.05 -0.63 16 4 C -0.12 -0.32 4.94 -19.75 -0.10 -0.42 16 5 C 0.10 0.72 4.63 22.49 0.10 0.82 16 6 O -0.67 -7.41 9.36 -61.49 -0.58 -7.98 16 7 S 2.60 27.22 5.13 -56.49 -0.29 26.93 16 8 O -0.96 -16.12 17.31 -118.57 -2.05 -18.17 16 9 O -0.94 -11.08 13.70 -115.18 -1.58 -12.66 16 10 C -0.63 -2.98 3.82 31.12 0.12 -2.86 16 11 H 0.16 0.80 5.63 -2.39 -0.01 0.79 16 12 C -0.14 -0.36 7.48 31.18 0.23 -0.13 16 13 C 0.08 0.08 4.38 31.18 0.14 0.22 16 14 H 0.11 -0.44 7.87 -2.39 -0.02 -0.46 16 15 O -0.37 -1.67 10.25 -148.98 -1.53 -3.20 16 16 C 0.10 0.11 5.90 71.24 0.42 0.53 16 17 C -0.11 -0.40 5.51 -19.87 -0.11 -0.51 16 18 C -0.11 -0.32 9.70 22.27 0.22 -0.11 16 19 C -0.13 -0.20 10.05 22.27 0.22 0.02 16 20 C -0.12 -0.09 10.05 22.27 0.22 0.13 16 21 C -0.13 -0.19 10.05 22.27 0.22 0.04 16 22 C -0.11 -0.36 9.70 22.27 0.22 -0.15 16 23 C -0.11 -0.18 7.50 31.12 0.23 0.05 16 24 C -0.16 -0.91 8.22 22.48 0.18 -0.73 16 25 C 0.18 0.27 6.68 38.08 0.25 0.52 16 26 N -0.34 -0.78 3.80 -187.80 -0.71 -1.49 16 27 C 0.06 -0.23 10.79 83.50 0.90 0.67 16 28 C -0.26 0.84 10.81 22.01 0.24 1.08 16 29 C 0.06 0.07 12.03 85.24 1.03 1.09 16 30 N -0.33 -2.18 11.88 -56.97 -0.68 -2.85 16 31 C -0.11 0.67 9.45 22.40 0.21 0.88 16 32 C -0.06 0.33 8.65 22.24 0.19 0.52 16 33 H 0.40 -0.43 8.65 -74.05 -0.64 -1.07 16 34 H 0.09 0.74 7.80 -2.39 -0.02 0.72 16 35 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 36 H -0.27 0.28 7.11 99.48 0.71 0.99 16 37 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.12 0.21 7.46 -2.38 -0.02 0.19 16 39 H 0.07 -0.07 8.09 -2.39 -0.02 -0.09 16 40 H 0.08 -0.15 8.08 -2.39 -0.02 -0.17 16 41 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.14 -0.32 8.06 -2.91 -0.02 -0.35 16 43 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 44 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 45 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 46 H 0.12 -0.16 8.10 -2.39 -0.02 -0.18 16 47 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.15 1.01 6.11 -2.91 -0.02 0.99 16 49 H 0.22 -3.13 7.06 -2.91 -0.02 -3.15 16 50 H 0.18 -1.54 8.06 -2.91 -0.02 -1.56 16 51 H 0.21 -0.75 8.06 -2.91 -0.02 -0.77 16 52 H 0.19 -2.98 6.76 -2.91 -0.02 -3.00 16 53 H 0.20 -2.84 5.14 -2.91 -0.01 -2.85 16 Total: 0.00 -34.05 447.77 -0.94 -35.00 By element: Atomic # 1 Polarization: -11.62 SS G_CDS: 0.37 Total: -11.25 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.32 Total: 1.38 kcal Atomic # 7 Polarization: -2.96 SS G_CDS: -1.39 Total: -4.35 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -7.01 Total: -47.08 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.05 Total: -0.63 kcal Atomic # 16 Polarization: 27.22 SS G_CDS: -0.29 Total: 26.93 kcal Total: -34.05 -0.94 -35.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16772190_15608174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.161 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds