Wall clock time and date at job start Mon Mar 8 2021 10:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45199 * 109.47198 * 2 1 4 4 C 1.34225 * 117.00237 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99905 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00301 * 180.02562 * 4 3 2 7 7 H 1.08993 * 112.85310 * 48.80256 * 6 4 3 8 8 C 1.53781 * 113.61620 * 180.02562 * 6 4 3 9 9 C 1.53788 * 87.08123 * 139.97705 * 8 6 4 10 10 F 1.39905 * 113.60911 * 89.19826 * 9 8 6 11 11 C 1.52998 * 113.61292 * 220.01568 * 9 8 6 12 12 S 1.81402 * 109.46874 * 180.02562 * 11 9 8 13 13 O 1.42099 * 110.54382 * 68.37538 * 12 11 9 14 14 O 1.42101 * 110.54543 * 291.62607 * 12 11 9 15 15 O 1.52201 * 104.45017 * 180.02562 * 12 11 9 16 16 C 1.35892 * 114.00156 * 74.99629 * 15 12 11 17 17 C 1.38764 * 120.01895 * 90.00105 * 16 15 12 18 18 C 1.50702 * 119.96275 * 0.02585 * 17 16 15 19 19 O 1.42892 * 109.47242 * 74.72007 * 18 17 16 20 20 Si 1.86298 * 109.46915 * 194.72546 * 18 17 16 21 21 C 1.38210 * 120.07769 * 179.74435 * 17 16 15 22 22 C 1.38131 * 120.12061 * 0.25666 * 21 17 16 23 23 C 1.38889 * 120.04355 * 0.02562 * 22 21 17 24 24 N 1.40183 * 120.04159 * 179.97438 * 23 22 21 25 25 C 1.35227 * 126.04876 * 5.00607 * 24 23 22 26 26 C 1.35324 * 107.71063 * 180.02562 * 25 24 23 27 27 C 1.39915 * 107.93056 * 359.97438 * 26 25 24 28 28 N 1.30871 * 108.24904 * 359.72098 * 27 26 25 29 29 C 1.38634 * 120.02830 * 270.27955 * 16 15 12 30 30 C 1.53777 * 87.07897 * 334.56763 * 9 8 6 31 31 H 1.08999 * 109.47182 * 60.00265 * 1 2 3 32 32 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47589 * 299.99893 * 1 2 3 34 34 H 1.09001 * 109.47694 * 239.99618 * 2 1 3 35 35 H 1.09005 * 109.47244 * 120.00146 * 2 1 3 36 36 H 1.08993 * 113.61710 * 25.43079 * 8 6 4 37 37 H 1.09001 * 113.61671 * 254.52730 * 8 6 4 38 38 H 1.08994 * 109.47233 * 60.00501 * 11 9 8 39 39 H 1.08994 * 109.47393 * 299.99885 * 11 9 8 40 40 H 1.09000 * 109.46724 * 314.72053 * 18 17 16 41 41 H 0.96703 * 114.00176 * 180.02562 * 19 18 17 42 42 H 1.48506 * 109.99834 * 178.68053 * 20 18 17 43 43 H 1.48502 * 110.00011 * 299.99318 * 20 18 17 44 44 H 1.07997 * 119.94117 * 180.23557 * 21 17 16 45 45 H 1.08002 * 119.98237 * 179.97438 * 22 21 17 46 46 H 1.07997 * 126.14963 * 359.97438 * 25 24 23 47 47 H 1.08009 * 126.03176 * 180.02562 * 26 25 24 48 48 H 1.08011 * 125.87615 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.05404 * 359.97438 * 29 16 15 50 50 H 1.09003 * 113.60958 * 139.98226 * 30 9 8 51 51 H 1.08998 * 113.61068 * 270.87757 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0012 7 1 3.4709 3.5812 0.7569 8 6 5.4581 2.9681 0.0011 9 6 5.3563 4.1429 -0.9861 10 9 5.2849 5.3936 -0.3632 11 6 6.3985 4.0951 -2.1052 12 16 6.1779 5.5259 -3.1983 13 8 6.5236 6.7274 -2.5229 14 8 4.9603 5.4171 -3.9227 15 8 7.2595 5.3653 -4.2570 16 6 6.9934 4.4015 -5.1773 17 6 6.3026 4.7213 -6.3375 18 6 5.8481 6.1381 -6.5766 19 8 6.9711 6.9437 -6.9399 20 14 4.5938 6.1638 -7.9538 21 6 6.0359 3.7431 -7.2768 22 6 6.4514 2.4435 -7.0613 23 6 7.1380 2.1167 -5.8991 24 7 7.5592 0.7976 -5.6802 25 6 7.4481 -0.2286 -6.5538 26 6 7.9698 -1.3293 -5.9644 27 6 8.4151 -0.9649 -4.6890 28 7 8.1753 0.3105 -4.5201 29 6 7.4068 3.0970 -4.9551 30 6 3.9862 3.5775 -1.3956 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 5.9127 2.0753 -0.4282 37 1 5.8895 3.2427 0.9637 38 1 6.2739 3.1767 -2.6788 39 1 7.3983 4.1201 -1.6719 40 1 5.3967 6.5333 -5.6666 41 1 6.7522 7.8703 -7.1088 42 1 4.1141 7.5513 -8.1780 43 1 5.1970 5.6274 -9.2003 44 1 5.5014 3.9952 -8.1807 45 1 6.2414 1.6808 -7.7965 46 1 7.0193 -0.1789 -7.5437 47 1 8.0323 -2.3149 -6.4017 48 1 8.8814 -1.6219 -3.9696 49 1 7.9410 2.8455 -4.0508 50 1 3.2291 4.3442 -1.5605 51 1 4.0383 2.8513 -2.2067 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16772190_16464788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:34 Heat of formation + Delta-G solvation = -103.348658 kcal Electronic energy + Delta-G solvation = -43709.814366 eV Core-core repulsion = 38008.704193 eV Total energy + Delta-G solvation = -5701.110173 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.123 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.30338 -42.89608 -42.24226 -41.89103 -39.62635 -39.39546 -38.61088 -38.01326 -37.58416 -37.48512 -34.78435 -32.90545 -32.52260 -31.92653 -31.14517 -30.89571 -27.36893 -27.01314 -26.90888 -25.15149 -23.96599 -23.74120 -22.94360 -22.35707 -21.82772 -21.13442 -20.92835 -19.99424 -19.37791 -19.23540 -18.74835 -18.63608 -18.21315 -17.84234 -17.67528 -17.41908 -17.25084 -17.07403 -16.54485 -16.38505 -16.28969 -16.24743 -15.93475 -15.60202 -15.45449 -15.28548 -14.76193 -14.72517 -14.68967 -14.49762 -14.45762 -14.41479 -14.02361 -13.86570 -13.75241 -13.69840 -13.69124 -13.60262 -13.53981 -13.46747 -13.13123 -13.09640 -12.97851 -12.97337 -12.58408 -12.50880 -12.40764 -11.94394 -11.91637 -11.78154 -11.59211 -11.57510 -11.50589 -11.37801 -10.60564 -10.42764 -10.20383 -9.27609 -4.94304 -1.42794 -0.57024 -0.29180 0.66524 0.94989 0.95837 1.18768 1.23930 1.52246 1.55584 1.81132 1.86083 2.12392 2.18371 2.50608 2.61129 2.66391 2.78414 3.08595 3.10739 3.17150 3.21312 3.34654 3.54296 3.58765 3.68376 3.75686 3.81507 3.90363 3.96482 3.98898 4.03041 4.03453 4.11484 4.21301 4.24762 4.29188 4.31669 4.37712 4.47918 4.59108 4.61358 4.64284 4.67304 4.75272 4.81278 4.82577 4.89734 4.93336 4.96725 5.04398 5.12136 5.23831 5.38699 5.60381 6.00793 6.42813 6.52659 6.57257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.477 3.523 5 O -0.530 6.530 6 C -0.107 4.107 7 H 0.153 0.847 8 C -0.117 4.117 9 C 0.093 3.907 10 F -0.186 7.186 11 C -0.659 4.659 12 S 2.587 3.413 13 O -0.952 6.952 14 O -0.941 6.941 15 O -0.662 6.662 16 C 0.089 3.911 17 C -0.070 4.070 18 C -0.129 4.129 19 O -0.554 6.554 20 Si 0.786 3.214 21 C -0.067 4.067 22 C -0.100 4.100 23 C 0.181 3.819 24 N -0.341 5.341 25 C 0.055 3.945 26 C -0.262 4.262 27 C 0.057 3.943 28 N -0.334 5.334 29 C -0.149 4.149 30 C -0.143 4.143 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.177 0.823 39 H 0.176 0.824 40 H 0.074 0.926 41 H 0.395 0.605 42 H -0.284 1.284 43 H -0.250 1.250 44 H 0.181 0.819 45 H 0.191 0.809 46 H 0.221 0.779 47 H 0.179 0.821 48 H 0.211 0.789 49 H 0.158 0.842 50 H 0.118 0.882 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 -8.424 -5.086 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.321 3.679 5 O -0.419 6.419 6 C -0.126 4.126 7 H 0.171 0.829 8 C -0.155 4.155 9 C 0.073 3.927 10 F -0.166 7.166 11 C -0.787 4.787 12 S 2.685 3.315 13 O -0.951 6.951 14 O -0.940 6.940 15 O -0.620 6.620 16 C 0.047 3.953 17 C -0.073 4.073 18 C -0.235 4.235 19 O -0.364 6.364 20 Si 0.686 3.314 21 C -0.085 4.085 22 C -0.121 4.121 23 C 0.087 3.913 24 N -0.118 5.118 25 C -0.085 4.085 26 C -0.290 4.290 27 C -0.130 4.130 28 N -0.153 5.153 29 C -0.171 4.171 30 C -0.180 4.180 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.195 0.805 39 H 0.194 0.806 40 H 0.092 0.908 41 H 0.246 0.754 42 H -0.210 1.210 43 H -0.176 1.176 44 H 0.198 0.802 45 H 0.208 0.792 46 H 0.237 0.763 47 H 0.197 0.803 48 H 0.227 0.773 49 H 0.175 0.825 50 H 0.137 0.863 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.164 -7.170 -5.230 10.268 hybrid contribution 1.482 0.257 0.858 1.731 sum -3.682 -6.913 -4.372 8.970 Atomic orbital electron populations 1.21835 0.90705 1.04308 1.03791 1.23298 0.96934 0.79076 1.02685 1.86527 1.23904 1.33768 1.83251 1.23563 0.80769 0.92206 0.71337 1.90680 1.61069 1.43762 1.46428 1.22572 0.97193 0.91147 1.01711 0.82914 1.23597 0.93849 0.97130 1.00953 1.21376 0.96265 0.81819 0.93266 1.92987 1.97121 1.42636 1.83849 1.31264 1.10925 1.23485 1.13047 1.05664 0.73702 0.76897 0.75262 1.93635 1.82838 1.43424 1.75158 1.93609 1.46081 1.87083 1.67198 1.85737 1.67314 1.59943 1.49053 1.17729 1.02573 0.84677 0.90358 1.19747 0.97913 0.96104 0.93579 1.25615 0.96941 0.89587 1.11348 1.86544 1.33204 1.25510 1.91108 0.93718 0.80572 0.83399 0.73734 1.21218 0.97878 0.90894 0.98528 1.21421 0.96716 0.98231 0.95767 1.17315 0.97544 0.80959 0.95447 1.45933 1.46574 1.06331 1.12948 1.23429 1.00564 0.86384 0.98118 1.22087 1.09540 1.01444 0.95927 1.24693 0.97552 0.92211 0.98512 1.77440 1.18608 1.13673 1.05534 1.20956 1.03243 0.89856 1.03030 1.23865 0.95435 1.02060 0.96669 0.91104 0.88478 0.91371 0.91053 0.91303 0.85924 0.87072 0.80512 0.80627 0.90798 0.75405 1.21049 1.17578 0.80213 0.79159 0.76287 0.80322 0.77263 0.82465 0.86313 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.68 10.29 71.98 0.74 1.42 16 2 C 0.05 -0.01 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.91 10.22 -51.37 -0.53 -1.43 16 4 C 0.48 1.52 7.48 71.24 0.53 2.06 16 5 O -0.53 -4.48 15.65 21.96 0.34 -4.14 16 6 C -0.11 0.14 4.24 -11.01 -0.05 0.10 16 7 H 0.15 -0.69 8.14 -2.39 -0.02 -0.71 16 8 C -0.12 0.17 6.86 31.12 0.21 0.39 16 9 C 0.09 0.07 1.62 -10.27 -0.02 0.05 16 10 F -0.19 -1.10 16.28 44.97 0.73 -0.37 16 11 C -0.66 0.18 5.16 71.98 0.37 0.55 16 12 S 2.59 19.60 4.65 -56.49 -0.26 19.33 16 13 O -0.95 -15.12 17.54 -118.57 -2.08 -17.20 16 14 O -0.94 -6.66 14.23 -118.57 -1.69 -8.35 16 15 O -0.66 -5.82 9.47 -61.42 -0.58 -6.40 16 16 C 0.09 0.50 4.78 22.49 0.11 0.61 16 17 C -0.07 -0.26 4.71 -19.74 -0.09 -0.35 16 18 C -0.13 -0.57 2.22 71.24 0.16 -0.41 16 19 O -0.55 -3.65 12.86 -148.98 -1.92 -5.57 16 20 Si 0.79 -1.89 30.19 68.60 2.07 0.18 16 21 C -0.07 0.25 8.65 22.24 0.19 0.44 16 22 C -0.10 0.63 9.45 22.40 0.21 0.84 16 23 C 0.18 -0.08 6.68 38.08 0.25 0.17 16 24 N -0.34 -0.05 3.80 -187.81 -0.71 -0.77 16 25 C 0.06 -0.30 10.79 83.50 0.90 0.60 16 26 C -0.26 1.21 10.81 22.00 0.24 1.45 16 27 C 0.06 -0.06 12.02 85.24 1.03 0.96 16 28 N -0.33 -1.21 11.88 -56.97 -0.68 -1.89 16 29 C -0.15 -0.38 8.06 22.48 0.18 -0.20 16 30 C -0.14 0.26 7.08 31.12 0.22 0.48 16 31 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 35 H 0.07 0.01 8.13 -2.38 -0.02 -0.01 16 36 H 0.12 -0.17 7.39 -2.39 -0.02 -0.19 16 37 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.18 -0.83 6.38 -2.39 -0.02 -0.85 16 39 H 0.18 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.07 0.47 5.43 -2.39 -0.01 0.45 16 41 H 0.40 -0.47 8.74 -74.06 -0.65 -1.12 16 42 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 43 H -0.25 0.49 6.75 99.48 0.67 1.16 16 44 H 0.18 -1.67 4.89 -2.91 -0.01 -1.69 16 45 H 0.19 -2.87 6.76 -2.91 -0.02 -2.89 16 46 H 0.22 -3.22 7.06 -2.91 -0.02 -3.24 16 47 H 0.18 -1.71 8.06 -2.91 -0.02 -1.73 16 48 H 0.21 -1.37 8.06 -2.91 -0.02 -1.39 16 49 H 0.16 0.21 7.11 -2.91 -0.02 0.19 16 50 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 51 H 0.13 -0.53 7.91 -2.39 -0.02 -0.55 16 Total: 0.00 -33.26 438.76 0.71 -32.54 By element: Atomic # 1 Polarization: -15.90 SS G_CDS: 0.37 Total: -15.54 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.64 Total: 9.59 kcal Atomic # 7 Polarization: -1.26 SS G_CDS: -1.39 Total: -2.65 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -6.44 Total: -43.09 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.73 Total: -0.37 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.07 Total: 0.18 kcal Atomic # 16 Polarization: 19.60 SS G_CDS: -0.26 Total: 19.33 kcal Total: -33.26 0.71 -32.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16772190_16464788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.804 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds